RchiOBHm_Chr5g0026801

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000207
Physical Location & Seq
Reverse (-)
20788887 .. 20789321
435 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30638

Sequence Viewer

Length: 366 bp
ATGCTTGCAGCCTTGCAGGGATTTGTACCAAAATCTCCAAATGATTGGAATGCAGGTAATTGGTCTAATGGGTGTGTTCGCAAGACCAATTACCTGCAGTTGAAGTTGCCAGACACATCTTCTTCTTGGTTTGATACAAGCATGAGCCTTGAGGAGTGCAAGGTTTTATGTTTGGAAAACTGCTCATGTACGGCATATGCAAATACAGATATCAGGGATGGAGGAAGTGGCTGCTTGCTTTGGTTTGAGAACCTCATTGACATAAAAGAATTCACTCCTGGTGGTGGTCAAGACCTCTATATACGTATGGCTGCTTCAGAACTAGGTAGCTTTTCAAATTCACTTGGTTTGATCTTTTCACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

121

Amino Acids

13.28

Weight (kDa)

4.46

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 33 - 88 4.1e-20 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 44, 102
AcsI RAATTY 2 cut(s) 269, 337
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 2 cut(s) 27, 190
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 2 cut(s) 103, 336
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 1 cut(s) 330
AluI AGCT 1 cut(s) 330
ApeKI GCWGC 3 cut(s) 8, 231, 311
ApoI RAATTY 2 cut(s) 269, 337
BarI GAAGNNNNNNTAC 2 cut(s) 298, 330
BbvI GCAGC 3 cut(s) 20, 218, 298
BccI CCATC 1 cut(s) 212
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 279
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 95
BfuAI ACCTGC 2 cut(s) 44, 102
BisI GCNGC 3 cut(s) 9, 232, 312
BlsI GCNGC 3 cut(s) 10, 233, 313
Bme1390I CCNGG 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 170
BsaAI YACGTR 1 cut(s) 305
Bsc4I CCNNNNNNNGG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 3 cut(s) 20, 218, 298
BslI CCNNNNNNNGG 1 cut(s) 284
BsmI GAATGC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 351
BspMAI CTGCAG 1 cut(s) 99
BspMI ACCTGC 2 cut(s) 44, 102
BssMI GATC 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 6, 236
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 1 cut(s) 354
BstMBI GATC 1 cut(s) 351
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstSFI CTRYAG 1 cut(s) 95
BstSNI TACGTA 1 cut(s) 305
BstV1I GCAGC 3 cut(s) 20, 218, 298
BstXI CCANNNNNNTGG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 223
BveI ACCTGC 2 cut(s) 44, 102
Cac8I GCNNGC 2 cut(s) 6, 236
Csp6I GTAC 2 cut(s) 26, 189
CviAII CATG 2 cut(s) 142, 186
CviJI RGCY 5 cut(s) 11, 147, 231, 311, 330
CviKI_1 RGCY 5 cut(s) 11, 147, 231, 311, 330
CviQI GTAC 2 cut(s) 26, 189
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Eco105I TACGTA 1 cut(s) 305
Eco32I GATATC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 277
EcoRV GATATC 1 cut(s) 211
FaeI CATG 2 cut(s) 145, 189
FaiI YATR 9 cut(s) 143, 169, 187, 196, 198, 263, 300, 302, 308
FatI CATG 2 cut(s) 141, 185
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 9, 232, 312
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 3 cut(s) 9, 232, 312
FspBI CTAG 1 cut(s) 323
GluI GCNGC 3 cut(s) 9, 232, 312
Hin1II CATG 2 cut(s) 145, 189
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 1 cut(s) 290
HpyCH4IV ACGT 1 cut(s) 304
HpyCH4V TGCA 6 cut(s) 8, 16, 53, 97, 159, 200
HpySE526I ACGT 1 cut(s) 304
Hsp92II CATG 2 cut(s) 145, 189
Kzo9I GATC 1 cut(s) 351
LpnPI CCDG 7 cut(s) 2, 39, 107, 123, 199, 264, 291
Lsp1109I GCAGC 3 cut(s) 20, 218, 298
MaeI CTAG 1 cut(s) 323
MaeII ACGT 1 cut(s) 304
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 2 cut(s) 111, 114
MluCI AATT 4 cut(s) 58, 88, 269, 337
MnlI CCTC 4 cut(s) 145, 215, 263, 305
MspR9I CCNGG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 1 cut(s) 279
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 351
NlaIII CATG 2 cut(s) 145, 189
PctI GAATGC 1 cut(s) 55
PkrI GCNGC 3 cut(s) 10, 233, 313
Ppu21I YACGTR 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PstI CTGCAG 1 cut(s) 99
RsaI GTAC 2 cut(s) 27, 190
RsaNI GTAC 2 cut(s) 26, 189
SatI GCNGC 3 cut(s) 9, 232, 312
Sau3AI GATC 1 cut(s) 351
ScrFI CCNGG 1 cut(s) 279
SetI ASST 8 cut(s) 58, 96, 165, 255, 297, 307, 328, 332
SfcI CTRYAG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SnaBI TACGTA 1 cut(s) 305
Sse9I AATT 4 cut(s) 58, 88, 269, 337
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 277
TaiI ACGT 1 cut(s) 307
TasI AATT 4 cut(s) 58, 88, 269, 337
TseI GCWGC 3 cut(s) 8, 231, 311
XapI RAATTY 2 cut(s) 269, 337
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.