RchiOBHm_Chr5g0026911

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000207
Physical Location & Seq
Reverse (-)
20879507 .. 20883242
3736 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30649

Sequence Viewer

Length: 2451 bp
ATGATCAGAACATCGATGCAAACCATGAAAACCATTATTCTGTGGTTGTTCTTATTTTCCTTCCTAAGAACCTCAAATACACTAGACTCTATCACTCCAACTCAATTTATTAAAGATGGTCAAACTCTGGTTTCAGCAGGTGGAGGCTATGAACTGGGATTCTTTAGTCCCGGTGAAGTGAAGGGCAGATACTTGGGAATATGGTACACCTTTTCTACTGAGACAGTGGTATGGGTAGCCAACAGAGAAGTACCACTTGATGATTCTTCAGGAGTTTTAAAGGTCACTGATCAGGGAGGTTTAGTCCTTCTCAATAGCTCAAATGGCACTGTATGGTCCTCCAACTTATCGAGAACTGCAGGGAATCCAGTCTCGCAACTCTTGGATTCGGGAAATCTTGTTGTGAAAGATGGAAAAGAAACGAATCCTAGTAACTTCTTGTGGCAGAGTTTTGATTATCCTTGTGATACACACCTGCCAGAAATGAAGCTTGGTTGGAATTTAGTTACTGGTTTAGATAGGTATGTCTCGTCTTGGAGGAGCACAGAAGATCCTGCTCGAGGAGACTTTTCACTACGGATGGATACTCATGGTTTCCCACAGATTTTTATTATGAAGGGAGCTAAGATACAGACTAGAGCAGGGACATGGAACGGCGCTGGATTAACTGGATATCAAGGAAAGCCAAATCCAGTAGCAAATTTTGAATTTGTGTTGACTAAGAATGAAGTCTATTATGAGTACACACTCATCAACAGGTCAATGTTTGCAAGATATGTGTTGAACCCGTATGGCCTTGCACAGTGGTTCACCTGGACAGATTACTCACACAGTTGGGAACCTTTCGTGTCATCCCAAGCAGATCAGTGTGATAATTATGCCTTTTGTGGTGCTAATGCTAGATGTAATGTCAGTAATACTCCTGTATGTGCATGCTTGAAAGGGTTTGTACCAAAATCTCCGAAAGATTGGAACTCAACAAATTGGTCTGAGGGATGTGTTCGGAAGACTCCATTAGCTTGCAGCTCTGCAGATGGCTTCTCAAAGTACAGTAACTTTAAACTGCCAGACACATCTTCTTCCTGGTATGACAAGAGCATGGGCCTTGAGGAATGCCAGGGATTATGTTTGCGAAACTGTTCATGTACTGCATGTGCAAATTTAGATGTCAGGGAAGGTGGAAGTGGCTGCTTGCTTTGGTTTGGGAACCTCAACGACATTAGAGAATTCACCTCTGATTATCAAGACCTCTATATACGGCTGGCTGCTTCAGACCTAGGACTGCGATATAGGAGATTGTCTGCTCTAGTGCCTTGTTTTCTTTGGAAAATTATTGGATTTCTATTGATATATAGTCATATTCGACTAAGATCTACTCTTTCAGAAGCCCGAAGAAAGCTGGATTCCAGAAACGGGGATTACCGTGGAGAAGACGGGGAAGACTTGGAGTTACCATTATTTGACTTGACCACTATTGCTAATGCCACTAATGACTTTTCAAGCAGCAACAAGCTGGGTGAAGGTGGTTTTGGGCCTGTGTACAAGGGAACTTTGGTTGGAGGAGAGGAAATTGCAGTAAAGAGGCTCTCAAAGAACTCTGGACAGGGATTGAGAGAGTTTAAAAACGAAGTTCTACTGATAGCCAAACTTCAGCATAGGAATCTTGTAAAGCTTCTTGGTTGTTGCATTCAAGAAGATGAAGAAATTTTAGTATATGAATTCATGCCTAACAGAAGCTTGGACTTCTTTATCTTTGATCAAGAAAGACAGAAGTTTCTCGACTGGCCCACGTGCTTCCACATTATTGACGGAATTGCTCGAGGGCTTCTTTATCTCCATCAAGACTCTAGATTAAGAATTATCCATAGGGATATGAAGGCTAGCAATATCTTGCTAGACAATGATATGAACCCAAAGATTTCGGACTTCGGCCTGGCTAAAACATTTGGGGGTGATCAAAGTGAAGACAGTACAAATAGAGTAGTTGGAACACATGGTTATATGGCTCCTGAATATGCAGTAGATGGAACTTTCTCAATGAAATCTGATGTATTTAGCTTTGGAGTTATCATGCTAGAGATATTGAGCAGGAAGAAGAACAGGGGATTTTGTCATCCAGATCACCGTCTCAACCTTCTTGGACATGCATGGACACTATGGAATCAAAATAATCCTCTGGAAATGGTTGATGTGACGTTATGTGATTCTTGCAACATAACCGAAGTGTTAAGGTGTCTTCATGTGGGCCTGTTATGTGTGCAACACGTACCTGAAGATAGACCAAGCATGTCATCTGTGGTTCTAATGTTGGGCAGTGAAGTTAAATTGCCTTCACCAAAGCAACCTGGTTTTTACACTGGACGGACTGTGACAGTCCCCGAATCAACATCATCAACGACCGACTTATTTTCAACAAATATTTGCAGCACAATGTTTCTAGAGGGTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

816

Amino Acids

91.6

Weight (kDa)

5.95

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 75 - 180 9.7e-38 D-mannose binding lectin
S_locus_glycop PF00954 213 - 320 1.5e-23 S-locus glycoprotein domain
PAN_2 PF08276 341 - 407 3.4e-19 PAN-like domain
Pkinase PF00069 500 - 699 9.4e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 502 - 767 7e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 128, 483
Acc36I ACCTGC 2 cut(s) 128, 483
AclWI GGATC 1 cut(s) 545
AcsI RAATTY 7 cut(s) 499, 700, 707, 1159, 1226, 1704, 1718
AcuI CTGAAG 4 cut(s) 252, 1254, 1634, 2292
AcvI CACGTG 1 cut(s) 1791
AfaI GTAC 9 cut(s) 206, 252, 743, 951, 1049, 1147, 1541, 1972, 2268
AfiI CCNNNNNNNGG 2 cut(s) 560, 1413
AflIII ACRYGT 1 cut(s) 2263
AgsI TTSAA 6 cut(s) 707, 784, 940, 1500, 1691, 2412
AjnI CCWGG 5 cut(s) 812, 1082, 1116, 1932, 2344
AjuI GAANNNNNNNTTGG 4 cut(s) 474, 506, 1512, 1544
Alw21I GWGCWC 1 cut(s) 545
Alw26I GTCTC 5 cut(s) 215, 376, 532, 558, 2132
AlwI GGATC 1 cut(s) 545
Ama87I CYCGRG 2 cut(s) 558, 1818
AoxI GGCC 6 cut(s) 793, 1102, 1532, 1784, 1930, 2245
ApeKI GCWGC 5 cut(s) 1023, 1188, 1265, 1503, 2424
ApoI RAATTY 7 cut(s) 499, 700, 707, 1159, 1226, 1704, 1718
Asp700I GAANNNNTTC 1 cut(s) 1138
AspA2I CCTAGG 1 cut(s) 1276
AspLEI GCGC 1 cut(s) 659
AspS9I GGNCC 5 cut(s) 336, 1102, 1532, 1785, 2245
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 7 cut(s) 185, 802, 1222, 1529, 1964, 2114, 2325
AsuNHI GCTAGC 1 cut(s) 1880
AvaI CYCGRG 2 cut(s) 558, 1818
AvaII GGWCC 1 cut(s) 336
AvrII CCTAGG 1 cut(s) 1276
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BbrPI CACGTG 1 cut(s) 1791
BbsI GAAGAC 5 cut(s) 1013, 1437, 1446, 1971, 2228
Bbv12I GWGCWC 1 cut(s) 545
BbvI GCAGC 5 cut(s) 1035, 1175, 1252, 1515, 2436
BccI CCATC 6 cut(s) 110, 404, 574, 1028, 1845, 2018
BceAI ACGGC 2 cut(s) 670, 1274
BciT130I CCWGG 5 cut(s) 814, 1084, 1118, 1934, 2346
BciVI GTATCC 1 cut(s) 577
BclI TGATCA 4 cut(s) 3, 289, 1756, 1954
BcnI CCSGG 1 cut(s) 171
BcoDI GTCTC 5 cut(s) 215, 376, 532, 558, 2132
BfmI CTRYAG 2 cut(s) 357, 1029
BfoI RGCGCY 1 cut(s) 660
BfuAI ACCTGC 2 cut(s) 128, 483
BfuI GTATCC 1 cut(s) 577
BglII AGATCT 1 cut(s) 1370
BisI GCNGC 5 cut(s) 1024, 1189, 1266, 1504, 2425
BlnI CCTAGG 1 cut(s) 1276
BlsI GCNGC 5 cut(s) 1025, 1190, 1267, 1505, 2426
Bme1390I CCNGG 6 cut(s) 171, 814, 1084, 1118, 1934, 2346
Bme18I GGWCC 1 cut(s) 336
BmeT110I CYCGRG 2 cut(s) 558, 1818
BmgT120I GGNCC 5 cut(s) 336, 1102, 1532, 1785, 2245
BmiI GGNNCC 3 cut(s) 840, 1208, 2007
BmrFI CCNGG 6 cut(s) 171, 814, 1084, 1118, 1934, 2346
BmrI ACTGGG 1 cut(s) 164
BmsI GCATC 1 cut(s) 6
BmtI GCTAGC 1 cut(s) 1884
BmuI ACTGGG 1 cut(s) 164
BpiI GAAGAC 5 cut(s) 1013, 1437, 1446, 1971, 2228
BpuEI CTTGAG 1 cut(s) 1127
BpuMI CCSGG 1 cut(s) 171
Bsa29I ATCGAT 1 cut(s) 14
BsaAI YACGTR 2 cut(s) 1791, 2266
BsaJI CCNNGG 3 cut(s) 1117, 1276, 1423
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 560, 1413
Bse1I ACTGG 7 cut(s) 159, 368, 514, 673, 692, 1787, 2362
BseBI CCWGG 5 cut(s) 814, 1084, 1118, 1934, 2346
BseCI ATCGAT 1 cut(s) 14
BseDI CCNNGG 3 cut(s) 1117, 1276, 1423
BseGI GGATG 4 cut(s) 585, 851, 1001, 2113
BseLI CCNNNNNNNGG 2 cut(s) 560, 1413
BseMII CTCAG 2 cut(s) 210, 981
BseNI ACTGG 7 cut(s) 159, 368, 514, 673, 692, 1787, 2362
BseRI GAGGAG 3 cut(s) 553, 576, 1575
BseXI GCAGC 5 cut(s) 1035, 1175, 1252, 1515, 2436
BseYI CCCAGC 1 cut(s) 1513
Bsh1285I CGRYCG 1 cut(s) 2400
BshFI GGCC 6 cut(s) 795, 1104, 1534, 1786, 1932, 2247
BshVI ATCGAT 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 2400
BsiHKAI GWGCWC 1 cut(s) 545
BsiHKCI CYCGRG 2 cut(s) 558, 1818
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 3 cut(s) 153, 658, 2360
BslI CCNNNNNNNGG 2 cut(s) 560, 1413
BsmAI GTCTC 5 cut(s) 215, 376, 532, 558, 2132
BsmBI CGTCTC 1 cut(s) 2132
BsmFI GGGAC 3 cut(s) 153, 658, 2360
BsmI GAATGC 2 cut(s) 1118, 1686
BsnI GGCC 6 cut(s) 795, 1104, 1534, 1786, 1932, 2247
BsoBI CYCGRG 2 cut(s) 558, 1818
Bsp1286I GDGCHC 1 cut(s) 545
Bsp1407I TGTACA 1 cut(s) 1539
Bsp143I GATC 8 cut(s) 3, 289, 550, 862, 1370, 1756, 1954, 2119
BspANI GGCC 6 cut(s) 795, 1104, 1534, 1786, 1932, 2247
BspCNI CTCAG 2 cut(s) 211, 982
BspDI ATCGAT 1 cut(s) 14
BspLI GGNNCC 3 cut(s) 840, 1208, 2007
BspMAI CTGCAG 2 cut(s) 361, 1033
BspMI ACCTGC 2 cut(s) 128, 483
BspOI GCTAGC 1 cut(s) 1884
BspPI GGATC 1 cut(s) 545
BsrGI TGTACA 1 cut(s) 1539
BsrI ACTGG 7 cut(s) 159, 368, 514, 673, 692, 1787, 2362
BssECI CCNNGG 3 cut(s) 1117, 1276, 1423
BssMI GATC 8 cut(s) 3, 289, 550, 862, 1370, 1756, 1954, 2119
BssT1I CCWWGG 1 cut(s) 1276
Bst2UI CCWGG 5 cut(s) 814, 1084, 1118, 1934, 2346
BstAUI TGTACA 1 cut(s) 1539
BstBAI YACGTR 2 cut(s) 1791, 2266
BstC8I GCNNGC 5 cut(s) 934, 1021, 1193, 1263, 1882
BstDEI CTNAG 6 cut(s) 65, 219, 624, 720, 990, 1367
BstDSI CCRYGG 1 cut(s) 1423
BstENI CCTNNNNNAGG 1 cut(s) 558
BstF5I GGATG 4 cut(s) 585, 851, 1001, 2113
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 1 cut(s) 659
BstKTI GATC 8 cut(s) 6, 292, 553, 865, 1373, 1759, 1957, 2122
BstMAI GTCTC 5 cut(s) 215, 376, 532, 558, 2132
BstMBI GATC 8 cut(s) 3, 289, 550, 862, 1370, 1756, 1954, 2119
BstMCI CGRYCG 1 cut(s) 2400
BstMWI GCNNNNNNNGC 1 cut(s) 324
BstNI CCWGG 5 cut(s) 814, 1084, 1118, 1934, 2346
BstNSI RCATGY 4 cut(s) 936, 1155, 2147, 2290
BstSCI CCNGG 6 cut(s) 169, 812, 1082, 1116, 1932, 2344
BstSFI CTRYAG 2 cut(s) 357, 1029
BstV1I GCAGC 5 cut(s) 1035, 1175, 1252, 1515, 2436
BstV2I GAAGAC 5 cut(s) 1013, 1437, 1446, 1971, 2228
BstX2I RGATCY 2 cut(s) 550, 1370
BstYI RGATCY 2 cut(s) 550, 1370
Bsu15I ATCGAT 1 cut(s) 14
BsuI GTATCC 1 cut(s) 577
BsuRI GGCC 6 cut(s) 795, 1104, 1534, 1786, 1932, 2247
BsuTUI ATCGAT 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 1423
BtsCI GGATG 4 cut(s) 585, 851, 1001, 2113
BtsI GCAGTG 1 cut(s) 2320
BtsIMutI CAGTG 7 cut(s) 231, 285, 327, 809, 872, 2320, 2355
BveI ACCTGC 2 cut(s) 128, 483
Cac8I GCNNGC 5 cut(s) 934, 1021, 1193, 1263, 1882
CfoI GCGC 1 cut(s) 659
Cfr13I GGNCC 5 cut(s) 336, 1102, 1532, 1785, 2245
ClaI ATCGAT 1 cut(s) 14
CsiI ACCWGGT 1 cut(s) 2344
Csp6I GTAC 9 cut(s) 205, 251, 742, 950, 1048, 1146, 1540, 1971, 2267
CviQI GTAC 9 cut(s) 205, 251, 742, 950, 1048, 1146, 1540, 1971, 2267
DdeI CTNAG 6 cut(s) 65, 219, 624, 720, 990, 1367
DpnI GATC 8 cut(s) 5, 291, 552, 864, 1372, 1758, 1956, 2121
DpnII GATC 8 cut(s) 3, 289, 550, 862, 1370, 1756, 1954, 2119
DraI TTTAAA 3 cut(s) 279, 1060, 1621
Eco130I CCWWGG 1 cut(s) 1276
Eco32I GATATC 1 cut(s) 674
Eco47I GGWCC 1 cut(s) 336
Eco57I CTGAAG 4 cut(s) 252, 1254, 1634, 2292
Eco72I CACGTG 1 cut(s) 1791
Eco88I CYCGRG 2 cut(s) 558, 1818
EcoNI CCTNNNNNAGG 1 cut(s) 558
EcoRI GAATTC 2 cut(s) 1226, 1718
EcoRII CCWGG 5 cut(s) 812, 1082, 1116, 1932, 2344
EcoRV GATATC 1 cut(s) 674
EcoT14I CCWWGG 1 cut(s) 1276
EcoT22I ATGCAT 1 cut(s) 2149
ErhI CCWWGG 1 cut(s) 1276
Esp3I CGTCTC 1 cut(s) 2132
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FaqI GGGAC 3 cut(s) 153, 658, 2360
FbaI TGATCA 4 cut(s) 3, 289, 1756, 1954
Fnu4HI GCNGC 5 cut(s) 1024, 1189, 1266, 1504, 2425
FokI GGATG 4 cut(s) 592, 838, 1008, 2100
Fsp4HI GCNGC 5 cut(s) 1024, 1189, 1266, 1504, 2425
GlaI GCGC 1 cut(s) 658
GluI GCNGC 5 cut(s) 1024, 1189, 1266, 1504, 2425
GsaI CCCAGC 1 cut(s) 1517
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 6 cut(s) 795, 1104, 1534, 1786, 1932, 2247
HapII CCGG 1 cut(s) 171
HhaI GCGC 1 cut(s) 659
Hin6I GCGC 1 cut(s) 657
HinP1I GCGC 1 cut(s) 657
HincII GTYRAC 1 cut(s) 717
HindII GTYRAC 1 cut(s) 717
HindIII AAGCTT 3 cut(s) 488, 1670, 1735
HpaII CCGG 1 cut(s) 171
HphI GGTGA 7 cut(s) 185, 802, 1222, 1529, 1964, 2114, 2325
Hpy166II GTNNAC 5 cut(s) 207, 717, 744, 810, 1540
Hpy188I TCNGA 9 cut(s) 8, 963, 991, 1005, 1237, 1273, 1384, 1924, 2047
Hpy8I GTNNAC 5 cut(s) 207, 717, 744, 810, 1540
HpyAV CCTTC 9 cut(s) 70, 175, 317, 610, 1169, 1514, 1870, 2144, 2340
HpyCH4IV ACGT 3 cut(s) 1790, 2195, 2265
HpyF10VI GCNNNNNNNGC 1 cut(s) 324
HpyF3I CTNAG 6 cut(s) 65, 219, 624, 720, 990, 1367
HpySE526I ACGT 3 cut(s) 1790, 2195, 2265
HspAI GCGC 1 cut(s) 657
Ksp22I TGATCA 4 cut(s) 3, 289, 1756, 1954
Kzo9I GATC 8 cut(s) 3, 289, 550, 862, 1370, 1756, 1954, 2119
LmnI GCTCC 3 cut(s) 540, 620, 2011
Lsp1109I GCAGC 5 cut(s) 1035, 1175, 1252, 1515, 2436
LweI GCATC 1 cut(s) 6
MabI ACCWGGT 1 cut(s) 2344
MaeII ACGT 3 cut(s) 1790, 2195, 2265
MaeIII GTNAC 7 cut(s) 283, 431, 505, 1052, 1449, 2191, 2368
MalI GATC 8 cut(s) 5, 291, 552, 864, 1372, 1758, 1956, 2121
MboI GATC 8 cut(s) 3, 289, 550, 862, 1370, 1756, 1954, 2119
MflI RGATCY 2 cut(s) 550, 1370
MhlI GDGCHC 1 cut(s) 545
MlyI GAGTC 3 cut(s) 80, 1003, 1838
MmeI TCCRAC 5 cut(s) 122, 366, 476, 1537, 1966
Mph1103I ATGCAT 1 cut(s) 2149
MroXI GAANNNNTTC 1 cut(s) 1138
MseI TTAA 8 cut(s) 111, 278, 665, 1059, 1620, 1853, 2228, 2322
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 6 cut(s) 171, 814, 1084, 1118, 1934, 2346
Mva1269I GAATGC 2 cut(s) 1118, 1686
MvaI CCWGG 5 cut(s) 814, 1084, 1118, 1934, 2346
MwoI GCNNNNNNNGC 1 cut(s) 324
NciI CCSGG 1 cut(s) 171
NdeII GATC 8 cut(s) 3, 289, 550, 862, 1370, 1756, 1954, 2119
NheI GCTAGC 1 cut(s) 1880
NlaIV GGNNCC 3 cut(s) 840, 1208, 2007
NmuCI GTSAC 3 cut(s) 283, 2191, 2368
NsiI ATGCAT 1 cut(s) 2149
NspI RCATGY 4 cut(s) 936, 1155, 2147, 2290
PaeI GCATGC 1 cut(s) 936
PaeR7I CTCGAG 2 cut(s) 558, 1818
PaqCI CACCTGC 2 cut(s) 128, 483
PctI GAATGC 2 cut(s) 1118, 1686
PdmI GAANNNNTTC 1 cut(s) 1138
PkrI GCNGC 5 cut(s) 1025, 1190, 1267, 1505, 2426
PleI GAGTC 3 cut(s) 80, 1003, 1838
PmaCI CACGTG 1 cut(s) 1791
PmlI CACGTG 1 cut(s) 1791
PpsI GAGTC 3 cut(s) 80, 1003, 1838
Ppu21I YACGTR 2 cut(s) 1791, 2266
Psp6I CCWGG 5 cut(s) 812, 1082, 1116, 1932, 2344
PspCI CACGTG 1 cut(s) 1791
PspFI CCCAGC 1 cut(s) 1513
PspGI CCWGG 5 cut(s) 812, 1082, 1116, 1932, 2344
PspN4I GGNNCC 3 cut(s) 840, 1208, 2007
PspPI GGNCC 5 cut(s) 336, 1102, 1532, 1785, 2245
PspXI VCTCGAGB 2 cut(s) 558, 1818
PsrI GAACNNNNNNTAC 2 cut(s) 61, 93
PstI CTGCAG 2 cut(s) 361, 1033
PsuI RGATCY 2 cut(s) 550, 1370
RsaI GTAC 9 cut(s) 206, 252, 743, 951, 1049, 1147, 1541, 1972, 2268
RsaNI GTAC 9 cut(s) 205, 251, 742, 950, 1048, 1146, 1540, 1971, 2267
SaqAI TTAA 8 cut(s) 111, 278, 665, 1059, 1620, 1853, 2228, 2322
SatI GCNGC 5 cut(s) 1024, 1189, 1266, 1504, 2425
Sau3AI GATC 8 cut(s) 3, 289, 550, 862, 1370, 1756, 1954, 2119
Sau96I GGNCC 5 cut(s) 336, 1102, 1532, 1785, 2245
SchI GAGTC 3 cut(s) 80, 1003, 1838
ScrFI CCNGG 6 cut(s) 171, 814, 1084, 1118, 1934, 2346
SduI GDGCHC 1 cut(s) 545
SexAI ACCWGGT 1 cut(s) 2344
SfaNI GCATC 1 cut(s) 6
SfcI CTRYAG 2 cut(s) 357, 1029
Sfr274I CTCGAG 2 cut(s) 558, 1818
SinI GGWCC 1 cut(s) 336
SlaI CTCGAG 2 cut(s) 558, 1818
SmlI CTYRAG 3 cut(s) 558, 1106, 1818
SmoI CTYRAG 3 cut(s) 558, 1106, 1818
SphI GCATGC 1 cut(s) 936
SspI AATATT 1 cut(s) 2419
StyD4I CCNGG 6 cut(s) 169, 812, 1082, 1116, 1932, 2344
StyI CCWWGG 1 cut(s) 1276
TaiI ACGT 3 cut(s) 1793, 2198, 2268
TaqI TCGA 6 cut(s) 14, 350, 559, 1363, 1779, 1819
TaqII GACCGA 1 cut(s) 2414
TatI WGTACW 5 cut(s) 741, 1047, 1145, 1539, 1970
Tru1I TTAA 8 cut(s) 111, 278, 665, 1059, 1620, 1853, 2228, 2322
Tru9I TTAA 8 cut(s) 111, 278, 665, 1059, 1620, 1853, 2228, 2322
TscAI CASTG 7 cut(s) 231, 292, 334, 809, 872, 2320, 2362
TseFI GTSAC 3 cut(s) 283, 2191, 2368
TseI GCWGC 5 cut(s) 1023, 1188, 1265, 1503, 2424
Tsp45I GTSAC 3 cut(s) 283, 2191, 2368
TspGWI ACGGA 3 cut(s) 592, 1824, 2377
TspRI CASTG 7 cut(s) 231, 292, 334, 809, 872, 2320, 2362
VpaK11BI GGWCC 1 cut(s) 336
XagI CCTNNNNNAGG 1 cut(s) 558
XapI RAATTY 7 cut(s) 499, 700, 707, 1159, 1226, 1704, 1718
XbaI TCTAGA 2 cut(s) 1847, 2437
XceI RCATGY 4 cut(s) 936, 1155, 2147, 2290
XhoI CTCGAG 2 cut(s) 558, 1818
XmaJI CCTAGG 1 cut(s) 1276
XmnI GAANNNNTTC 1 cut(s) 1138
Zsp2I ATGCAT 1 cut(s) 2149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.