Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000207

Physical Location & Seq

Genomic Coordinates Reverse (-)

63159508 .. 63163093

Gene Structure 3586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGGGTGATCTTTGTTTTGTGGTGTTTAGTACTAGTTTGCTCTTTCTGTTGCTCACAGCTTCATTTGCAGTTGACAGCATCAGTCCCTCGCAGTCTATCAGTGATAATGGCAGTGCCTTGGTTTCAAGTGATGGAACATTTGAGTTGGGTTTCTTCAGTCCAGGTAACTCGAAACATCGTTACGTGGGAATTTGGTACAAAAACATCCCAGTTAGAACTGTTGTTTGGGTTGCAAATCGATGCAACCCGATTGATGACTCATCCGGTGTGTTGATGATAAATAGCACAGGATATCTTGTGCTGTTGGGTCAGAGTAAGAGTGTTGTTTGGTGGACAAGTTTAGCGAAGTATACCCAGAGTGTAATGGTACAGCTATTAGATTCTGGAAACTTAGTAGTAAGAGATGTGACAGATGGAAAGTCATTGTGGCAAAGCTTTGATTATCCTTCTGATACATTGTTACCGGAAATGAAGATGGGATGGGACTTTAGGACAGGTCTTAAAAGGGAATTATCAGCATGGAAAAATTCAGAAGACCCATGTCCAGGAGAATTCACTTATGGGATTGAAATGGAGCCTCATGCATACCCTGAGGCATATTTTCGGAAAAGTGGTGTGAAATATTATCGTTCTGGCCCATGGAATGGCCTAAGATTCAGTGGGGCACCAGAACTAGGGCCTAATTCAATTTTTAGTTTTGATTTTGTGTATAATGATGATGAAGTGTACTACATGTACAAACTTCAAAACAAGTCTGTAATTTCAATTGTGGTCTTAAATGGAACCAGGAGTACGCGCCCACGCCTTACATGGATTGAAGCAGAGCAAACTTGGAGGGCCGATGCAACAGTATCTAGAGATTTCTGTGATCAATATGGCCTCTGTGGAGCAAATGCAGTGTGTATCGTTAGTAACAATCCAGTATGTCAATGTCTACAAGGATTCACGCCCATGTCACCAGAGAAATGGAATTTGACAGACTGGTCACTTGGATGTACGCGCAAGAAACCCCTAAGCTGCCAGGAAAGTGATAAAGACGGGTTTGTCAAATTCACTGACTTGAAATTGCCAGATACTACACATTCTTGGGTGAACAAAAGTATGAACATCAAGGAATGCAGAGCCGAATGCTTGAACAACTGTTCCTGTATGGCTTATACAAACTCGGACATTAGAGCAGGAGGTTCTGGCTGCGCCATTTGGTTTGGTGATCTGTTAGATATCAGAAAGTTTCCGGGTGCTGGCCAAGATCTATACATTCGAATGTTAGCTTCAGAGATAGAAGATGATGATAAATTGAAGACAGGAATTATAGTTGCTGTTGTGATAGCCGCAGTGTTTTCAGGAATGATCTTAATTGGCTACTACGTGTACCGAAGCAGGACCAAATTAAAAGATACAGAAAAACGAGAAGAAGGGGCACAGAAGGAGGACCTGGAGCTCCCACTTTTCAACACAACCACAATAGCTACTGCTACAGATAACTTTTCAGATGATAAGAAGCTTGGAGAAGGTGGCTTTGGACCTGTTTACAGGGGGACACTAGCAGATGGACAAGAATTTGCTGTGAAGAGGCTTTCAAGCAGTTCTAGCCAAGGATTTAATGAGTTTATGAATGAAATTATAATGATTGCCAAACTTCAGCACCGAAATCTTGTAAAGATTCTTGGTTGTTGTGTGCAAGAAGAGAAAATGCTCATGTACGAATACATGCCCAACGGAAGCCTGGACAACTTCATTTTTGCTCAAACAAGGGCAGTACTGTTAGATTGGCCTAAACGTTTCCACATCATTTGTGGAATTGCTCGGGGTCTCCTCTATCTCCACCAAGATTCCAGGCTAAGGATTATACATAGAGATCTAAAAGCAAGTAATGTTCTACTTGATGATGAAATGAATCCTAAAATTTCAGACTTTGGCTTGGCTAGAATATTAACTGGAGGAGATCAGACTGGAGGAAATACTAAGAGAGTGGTCGGGACATATGGCTACATGGCACCTGAATATGCCGCTGATGGGGTATTTTCTGTGAAATCCGATGTCTTTAGCTTTGGTATATTGGTGCTGGAGATTATAAGTGGAAGGAGAAACAAGGGCTTTTATCATCCAGACCACAGCCATAATCTTATTGGAAATGCTTGGAGATTGTGGAATGAAGGAAGGCCTTTAGAATTGGTTGATTCGTGGTTAAAGAGCCTTTGTAATCTATCAGAAGTGTTACGTTGCATCCAAGTTAGCCTTTTGTGCATTCAACATCATCCTGAGAATCGGCCAAGCATGGCGTCTGTGGTTATAATGTTGGGAAGCGATATTGCCTTGGCTCAACCTAAACAACCTGGTTTCTTTCTGGAAAAGGAACATGAAGCTGGCCCTGATATAGGTAATGAATCATCAACCAATGAAATATCCATTTCGCTTTTGGAAGCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

810

Amino Acids

90.65

Weight (kDa)

5.69

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	73 - 175	1.3e-35	D-mannose binding lectin
S_locus_glycop	PF00954	209 - 318	4e-28	S-locus glycoprotein domain
PAN_2	PF08276	340 - 408	1.2e-22	PAN-like domain
Pkinase	PF00069	497 - 763	2.8e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	499 - 764	9e-49	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27300
fragaria_vesca	FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica	MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica	Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis	pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis	RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata	RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora	Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii	Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa	Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha	Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana	Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1625, 2075, 2294
AasI	GACNNNNNNGTC	2 cut(s)	982, 1043
AccB1I	GGYRCC	2 cut(s)	664, 1996
AccB7I	CCANNNNNTGG	1 cut(s)	644
AccI	GTMKAC	2 cut(s)	350, 934
AccII	CGCG	2 cut(s)	796, 1000
AciI	CCGC	2 cut(s)	1332, 2010
AclI	AACGTT	1 cut(s)	1780
AcoI	YGGCCR	2 cut(s)	1243, 2270
AcsI	RAATTY	7 cut(s)	189, 526, 551, 970, 1049, 1559, 1905
AcuI	CTGAAG	3 cut(s)	139, 1257, 1625
AcyI	GRCGYC	1 cut(s)	2282
AfiI	CCNNNNNNNGG	7 cut(s)	545, 644, 674, 1241, 1842, 2016, 2378
AflIII	ACRYGT	2 cut(s)	732, 1368
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	8 cut(s)	160, 544, 785, 1020, 1434, 1725, 1835, 2335
AjuI	GAANNNNNNNTTGG	4 cut(s)	208, 240, 1503, 1535
AloI	GAACNNNNNNTCC	2 cut(s)	1127, 1159
Alw21I	GWGCWC	1 cut(s)	1443
Alw26I	GTCTC	1 cut(s)	1817
Ama87I	CYCGRG	1 cut(s)	1806
ApeKI	GCWGC	2 cut(s)	1017, 1191
ApoI	RAATTY	7 cut(s)	189, 526, 551, 970, 1049, 1559, 1905
AspLEI	GCGC	3 cut(s)	798, 1002, 1196
AspS9I	GGNCC	7 cut(s)	635, 677, 837, 1383, 1432, 1523, 2369
AsuC2I	CCSGG	1 cut(s)	1236
AsuHPI	GGTGA	4 cut(s)	17, 948, 1102, 1220
AsuII	TTCGAA	1 cut(s)	1261
AvaI	CYCGRG	1 cut(s)	1806
AvaII	GGWCC	3 cut(s)	1383, 1432, 1523
AxyI	CCTNAGG	1 cut(s)	591
BaeGI	GKGCMC	2 cut(s)	667, 1423
BalI	TGGCCA	1 cut(s)	1245
BanI	GGYRCC	2 cut(s)	664, 1996
BanII	GRGCYC	1 cut(s)	1443
BbsI	GAAGAC	2 cut(s)	540, 1307
Bbv12I	GWGCWC	1 cut(s)	1443
BbvI	GCAGC	2 cut(s)	1004, 1178
BccI	CCATC	6 cut(s)	125, 407, 469, 474, 1544, 2009
BciT130I	CCWGG	8 cut(s)	162, 546, 787, 1022, 1436, 1727, 1837, 2337
BclI	TGATCA	1 cut(s)	868
BcnI	CCSGG	1 cut(s)	1236
BcoDI	GTCTC	1 cut(s)	1817
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	6 cut(s)	33, 674, 855, 1544, 1590, 1926
BfmI	CTRYAG	1 cut(s)	1476
BglII	AGATCT	2 cut(s)	1249, 1858
BisI	GCNGC	4 cut(s)	1018, 1192, 1332, 2010
BlsI	GCNGC	4 cut(s)	1019, 1193, 1333, 2011
BmcAI	AGTACT	2 cut(s)	31, 1761
Bme1390I	CCNGG	9 cut(s)	162, 546, 787, 1022, 1236, 1436, 1727, 1837, 2337
Bme18I	GGWCC	3 cut(s)	1383, 1432, 1523
BmeT110I	CYCGRG	1 cut(s)	1806
BmgT120I	GGNCC	7 cut(s)	635, 677, 837, 1383, 1432, 1523, 2369
BmiI	GGNNCC	4 cut(s)	576, 666, 784, 1998
BmrFI	CCNGG	9 cut(s)	162, 546, 787, 1022, 1236, 1436, 1727, 1837, 2337
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	4 cut(s)	87, 230, 832, 2235
BmuI	ACTGGG	1 cut(s)	203
BoxI	GACNNNNGTC	1 cut(s)	540
BpiI	GAAGAC	2 cut(s)	540, 1307
BpmI	CTGGAG	4 cut(s)	1457, 1959, 1974, 2087
Bpu10I	CCTNAGC	2 cut(s)	1013, 1841
Bpu14I	TTCGAA	1 cut(s)	1261
BpuMI	CCSGG	1 cut(s)	1236
Bsa29I	ATCGAT	1 cut(s)	238
BsaAI	YACGTR	2 cut(s)	184, 1369
BsaHI	GRCGYC	1 cut(s)	2282
BsaI	GGTCTC	1 cut(s)	1817
BsaJI	CCNNGG	4 cut(s)	117, 638, 1594, 2316
BsaWI	WCCGGW	2 cut(s)	263, 463
Bsc4I	CCNNNNNNNGG	7 cut(s)	545, 644, 674, 1241, 1842, 2016, 2378
Bse1I	ACTGG	5 cut(s)	209, 920, 986, 1942, 1957
Bse21I	CCTNAGG	1 cut(s)	591
BseBI	CCWGG	8 cut(s)	162, 546, 787, 1022, 1436, 1727, 1837, 2337
BseCI	ATCGAT	1 cut(s)	238
BseDI	CCNNGG	4 cut(s)	117, 638, 1594, 2316
BseGI	GGATG	7 cut(s)	204, 260, 485, 998, 2104, 2226, 2257
BseLI	CCNNNNNNNGG	7 cut(s)	545, 644, 674, 1241, 1842, 2016, 2378
BseMII	CTCAG	2 cut(s)	582, 2253
BseNI	ACTGG	5 cut(s)	209, 920, 986, 1942, 1957
BseRI	GAGGAG	2 cut(s)	1805, 1956
BseSI	GKGCMC	2 cut(s)	667, 1423
BseXI	GCAGC	2 cut(s)	1004, 1178
Bsh1236I	CGCG	2 cut(s)	796, 1000
BshNI	GGYRCC	2 cut(s)	664, 1996
BshVI	ATCGAT	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	1443
BsiHKCI	CYCGRG	1 cut(s)	1806
BsiSI	CCGG	3 cut(s)	264, 464, 1235
BslFI	GGGAC	4 cut(s)	69, 497, 1552, 1993
BslI	CCNNNNNNNGG	7 cut(s)	545, 644, 674, 1241, 1842, 2016, 2378
BsmAI	GTCTC	1 cut(s)	1817
BsmFI	GGGAC	4 cut(s)	69, 497, 1552, 1993
BsmI	GAATGC	3 cut(s)	1121, 1133, 2247
Bso31I	GGTCTC	1 cut(s)	1817
BsoBI	CYCGRG	1 cut(s)	1806
Bsp119I	TTCGAA	1 cut(s)	1261
Bsp1286I	GDGCHC	3 cut(s)	667, 1423, 1443
Bsp1407I	TGTACA	1 cut(s)	735
Bsp143I	GATC	7 cut(s)	7, 868, 1210, 1249, 1350, 1858, 1945
Bsp19I	CCATGG	1 cut(s)	638
BspACI	CCGC	2 cut(s)	1332, 2010
BspCNI	CTCAG	2 cut(s)	583, 2254
BspDI	ATCGAT	1 cut(s)	238
BspFNI	CGCG	2 cut(s)	796, 1000
BspLI	GGNNCC	4 cut(s)	576, 666, 784, 1998
BspT104I	TTCGAA	1 cut(s)	1261
BspT107I	GGYRCC	2 cut(s)	664, 1996
BspTNI	GGTCTC	1 cut(s)	1817
BsrGI	TGTACA	1 cut(s)	735
BsrI	ACTGG	5 cut(s)	209, 920, 986, 1942, 1957
BssECI	CCNNGG	4 cut(s)	117, 638, 1594, 2316
BssMI	GATC	7 cut(s)	7, 868, 1210, 1249, 1350, 1858, 1945
BssNAI	GTATAC	1 cut(s)	351
BssNI	GRCGYC	1 cut(s)	2282
BssT1I	CCWWGG	4 cut(s)	117, 638, 1594, 2316
Bst1107I	GTATAC	1 cut(s)	351
Bst2UI	CCWGG	8 cut(s)	162, 546, 787, 1022, 1436, 1727, 1837, 2337
Bst4CI	ACNGT	4 cut(s)	220, 850, 1142, 1764
Bst6I	CTCTTC	2 cut(s)	1565, 1680
BstACI	GRCGYC	1 cut(s)	2282
BstAUI	TGTACA	1 cut(s)	735
BstBAI	YACGTR	2 cut(s)	184, 1369
BstBI	TTCGAA	1 cut(s)	1261
BstC8I	GCNNGC	2 cut(s)	1243, 2368
BstDEI	CTNAG	7 cut(s)	391, 591, 650, 1013, 1841, 1965, 2262
BstDSI	CCRYGG	1 cut(s)	638
BstENI	CCTNNNNNAGG	1 cut(s)	2376
BstF5I	GGATG	7 cut(s)	204, 260, 485, 998, 2104, 2226, 2257
BstFNI	CGCG	2 cut(s)	796, 1000
BstHHI	GCGC	3 cut(s)	798, 1002, 1196
BstKTI	GATC	7 cut(s)	10, 871, 1213, 1252, 1353, 1861, 1948
BstMAI	GTCTC	1 cut(s)	1817
BstMBI	GATC	7 cut(s)	7, 868, 1210, 1249, 1350, 1858, 1945
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 1590, 2244
BstNI	CCWGG	8 cut(s)	162, 546, 787, 1022, 1436, 1727, 1837, 2337
BstNSI	RCATGY	2 cut(s)	736, 1714
BstPAI	GACNNNNGTC	1 cut(s)	540
BstSCI	CCNGG	9 cut(s)	160, 544, 785, 1020, 1234, 1434, 1725, 1835, 2335
BstSFI	CTRYAG	1 cut(s)	1476
BstSLI	GKGCMC	2 cut(s)	667, 1423
BstUI	CGCG	2 cut(s)	796, 1000
BstV1I	GCAGC	2 cut(s)	1004, 1178
BstV2I	GAAGAC	2 cut(s)	540, 1307
BstX2I	RGATCY	2 cut(s)	1249, 1858
BstXI	CCANNNNNNTGG	1 cut(s)	966
BstYI	RGATCY	2 cut(s)	1249, 1858
BstZ17I	GTATAC	1 cut(s)	351
Bsu15I	ATCGAT	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	591
BsuTUI	ATCGAT	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	638
BtsCI	GGATG	7 cut(s)	204, 260, 485, 998, 2104, 2226, 2257
BtsI	GCAGTG	3 cut(s)	118, 903, 1341
BtsIMutI	CAGTG	6 cut(s)	106, 118, 664, 903, 1053, 1341
Cac8I	GCNNGC	2 cut(s)	1243, 2368
CfoI	GCGC	3 cut(s)	798, 1002, 1196
Cfr13I	GGNCC	7 cut(s)	635, 677, 837, 1383, 1432, 1523, 2369
ClaI	ATCGAT	1 cut(s)	238
CseI	GACGC	1 cut(s)	2271
CsiI	ACCWGGT	1 cut(s)	2335
CspCI	CAANNNNNGTGG	2 cut(s)	1775, 1810
DdeI	CTNAG	7 cut(s)	391, 591, 650, 1013, 1841, 1965, 2262
DpnI	GATC	7 cut(s)	9, 870, 1212, 1251, 1352, 1860, 1947
DpnII	GATC	7 cut(s)	7, 868, 1210, 1249, 1350, 1858, 1945
DrdI	GACNNNNNNGTC	2 cut(s)	982, 1043
DseDI	GACNNNNNNGTC	2 cut(s)	982, 1043
EaeI	YGGCCR	2 cut(s)	1243, 2270
Eam1104I	CTCTTC	2 cut(s)	1565, 1680
EarI	CTCTTC	2 cut(s)	1565, 1680
Ecl136II	GAGCTC	1 cut(s)	1441
Eco130I	CCWWGG	4 cut(s)	117, 638, 1594, 2316
Eco147I	AGGCCT	1 cut(s)	2164
Eco24I	GRGCYC	1 cut(s)	1443
Eco31I	GGTCTC	1 cut(s)	1817
Eco32I	GATATC	2 cut(s)	293, 1222
Eco47I	GGWCC	3 cut(s)	1383, 1432, 1523
Eco53kI	GAGCTC	1 cut(s)	1441
Eco57I	CTGAAG	3 cut(s)	139, 1257, 1625
Eco81I	CCTNAGG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	1806
EcoICRI	GAGCTC	1 cut(s)	1441
EcoNI	CCTNNNNNAGG	1 cut(s)	2376
EcoO109I	RGGNCCY	2 cut(s)	677, 1432
EcoRI	GAATTC	1 cut(s)	551
EcoRII	CCWGG	8 cut(s)	160, 544, 785, 1020, 1434, 1725, 1835, 2335
EcoRV	GATATC	2 cut(s)	293, 1222
EcoT14I	CCWWGG	4 cut(s)	117, 638, 1594, 2316
EcoT22I	ATGCAT	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	1443
ErhI	CCWWGG	4 cut(s)	117, 638, 1594, 2316
FalI	AAGNNNNNCTT	2 cut(s)	2223, 2255
FaqI	GGGAC	4 cut(s)	69, 497, 1552, 1993
FauNDI	CATATG	1 cut(s)	1984
FbaI	TGATCA	1 cut(s)	868
FblI	GTMKAC	2 cut(s)	350, 934
Fnu4HI	GCNGC	4 cut(s)	1018, 1192, 1332, 2010
FokI	GGATG	7 cut(s)	191, 247, 492, 1005, 2091, 2213, 2244
FriOI	GRGCYC	1 cut(s)	1443
Fsp4HI	GCNGC	4 cut(s)	1018, 1192, 1332, 2010
FspBI	CTAG	6 cut(s)	33, 674, 855, 1544, 1590, 1926
GlaI	GCGC	3 cut(s)	797, 1001, 1195
GluI	GCNGC	4 cut(s)	1018, 1192, 1332, 2010
GsuI	CTGGAG	4 cut(s)	1457, 1959, 1974, 2087
HapII	CCGG	3 cut(s)	264, 464, 1235
HgaI	GACGC	1 cut(s)	2271
HhaI	GCGC	3 cut(s)	798, 1002, 1196
Hin1I	GRCGYC	1 cut(s)	2282
Hin6I	GCGC	3 cut(s)	796, 1000, 1194
HinP1I	GCGC	3 cut(s)	796, 1000, 1194
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	2 cut(s)	433, 1502
HpaII	CCGG	3 cut(s)	264, 464, 1235
HphI	GGTGA	4 cut(s)	17, 948, 1102, 1220
Hpy166II	GTNNAC	8 cut(s)	73, 333, 351, 727, 935, 1093, 1372, 1531
Hpy188III	TCNNGA	7 cut(s)	384, 855, 1344, 1978, 2108, 2261, 2348
Hpy8I	GTNNAC	8 cut(s)	73, 333, 351, 727, 935, 1093, 1372, 1531
HpyAV	CCTTC	7 cut(s)	456, 1409, 1420, 1505, 2076, 2150, 2154
HpyCH4III	ACNGT	4 cut(s)	220, 850, 1142, 1764
HpyCH4IV	ACGT	4 cut(s)	183, 1368, 1780, 2221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 1590, 2244
HpyF3I	CTNAG	7 cut(s)	391, 591, 650, 1013, 1841, 1965, 2262
HpySE526I	ACGT	4 cut(s)	183, 1368, 1780, 2221
Hsp92I	GRCGYC	1 cut(s)	2282
HspAI	GCGC	3 cut(s)	796, 1000, 1194
Ksp22I	TGATCA	1 cut(s)	868
Kzo9I	GATC	7 cut(s)	7, 868, 1210, 1249, 1350, 1858, 1945
LmnI	GCTCC	4 cut(s)	574, 887, 1438, 1446
Lsp1109I	GCAGC	2 cut(s)	1004, 1178
LweI	GCATC	4 cut(s)	87, 230, 832, 2235
MabI	ACCWGGT	1 cut(s)	2335
MaeI	CTAG	6 cut(s)	33, 674, 855, 1544, 1590, 1926
MaeII	ACGT	4 cut(s)	183, 1368, 1780, 2221
MaeIII	GTNAC	8 cut(s)	164, 179, 406, 459, 911, 954, 984, 2217
MalI	GATC	7 cut(s)	9, 870, 1212, 1251, 1352, 1860, 1947
MboI	GATC	7 cut(s)	7, 868, 1210, 1249, 1350, 1858, 1945
MboII	GAAGA	8 cut(s)	145, 484, 545, 1295, 1312, 1424, 1582, 1697
MfeI	CAATTG	1 cut(s)	765
MflI	RGATCY	2 cut(s)	1249, 1858
MhlI	GDGCHC	3 cut(s)	667, 1423, 1443
MlsI	TGGCCA	1 cut(s)	1245
MluNI	TGGCCA	1 cut(s)	1245
MlyI	GAGTC	1 cut(s)	251
Mox20I	TGGCCA	1 cut(s)	1245
Mph1103I	ATGCAT	1 cut(s)	586
MscI	TGGCCA	1 cut(s)	1245
MseI	TTAA	7 cut(s)	501, 776, 1355, 1391, 1602, 1934, 2189
MslI	CAYNNNNRTG	3 cut(s)	950, 991, 1262
Msp20I	TGGCCA	1 cut(s)	1245
MspA1I	CMGCKG	1 cut(s)	2012
MspI	CCGG	3 cut(s)	264, 464, 1235
MspR9I	CCNGG	9 cut(s)	162, 546, 787, 1022, 1236, 1436, 1727, 1837, 2337
MunI	CAATTG	1 cut(s)	765
Mva1269I	GAATGC	3 cut(s)	1121, 1133, 2247
MvaI	CCWGG	8 cut(s)	162, 546, 787, 1022, 1436, 1727, 1837, 2337
MvnI	CGCG	2 cut(s)	796, 1000
MwoI	GCNNNNNNNGC	3 cut(s)	65, 1590, 2244
NciI	CCSGG	1 cut(s)	1236
NcoI	CCATGG	1 cut(s)	638
NdeI	CATATG	1 cut(s)	1984
NdeII	GATC	7 cut(s)	7, 868, 1210, 1249, 1350, 1858, 1945
NlaIV	GGNNCC	4 cut(s)	576, 666, 784, 1998
NmuCI	GTSAC	3 cut(s)	406, 954, 984
NsiI	ATGCAT	1 cut(s)	586
NspI	RCATGY	2 cut(s)	736, 1714
NspV	TTCGAA	1 cut(s)	1261
PceI	AGGCCT	1 cut(s)	2164
PciI	ACATGT	1 cut(s)	732
PctI	GAATGC	3 cut(s)	1121, 1133, 2247
PfeI	GAWTC	9 cut(s)	380, 654, 942, 1663, 1832, 1897, 2180, 2266, 2387
PflMI	CCANNNNNTGG	1 cut(s)	644
PfoI	TCCNGGA	1 cut(s)	544
PkrI	GCNGC	4 cut(s)	1019, 1193, 1333, 2011
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Ppu21I	YACGTR	2 cut(s)	184, 1369
PpuMI	RGGWCCY	1 cut(s)	1432
PscI	ACATGT	1 cut(s)	732
PshAI	GACNNNNGTC	1 cut(s)	540
PsiI	TTATAA	3 cut(s)	1625, 2075, 2294
Psp124BI	GAGCTC	1 cut(s)	1443
Psp1406I	AACGTT	1 cut(s)	1780
Psp5II	RGGWCCY	1 cut(s)	1432
Psp6I	CCWGG	8 cut(s)	160, 544, 785, 1020, 1434, 1725, 1835, 2335
PspGI	CCWGG	8 cut(s)	160, 544, 785, 1020, 1434, 1725, 1835, 2335
PspN4I	GGNNCC	4 cut(s)	576, 666, 784, 1998
PspPI	GGNCC	7 cut(s)	635, 677, 837, 1383, 1432, 1523, 2369
PspPPI	RGGWCCY	1 cut(s)	1432
PsrI	GAACNNNNNNTAC	2 cut(s)	775, 807
PsuI	RGATCY	2 cut(s)	1249, 1858
RseI	CAYNNNNRTG	3 cut(s)	950, 991, 1262
SacI	GAGCTC	1 cut(s)	1443
SaqAI	TTAA	7 cut(s)	501, 776, 1355, 1391, 1602, 1934, 2189
SatI	GCNGC	4 cut(s)	1018, 1192, 1332, 2010
Sau3AI	GATC	7 cut(s)	7, 868, 1210, 1249, 1350, 1858, 1945
Sau96I	GGNCC	7 cut(s)	635, 677, 837, 1383, 1432, 1523, 2369
ScaI	AGTACT	2 cut(s)	31, 1761
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	9 cut(s)	162, 546, 787, 1022, 1236, 1436, 1727, 1837, 2337
SduI	GDGCHC	3 cut(s)	667, 1423, 1443
SexAI	ACCWGGT	1 cut(s)	2335
SfaNI	GCATC	4 cut(s)	87, 230, 832, 2235
SfcI	CTRYAG	1 cut(s)	1476
SfuI	TTCGAA	1 cut(s)	1261
SinI	GGWCC	3 cut(s)	1383, 1432, 1523
SmiMI	CAYNNNNRTG	3 cut(s)	950, 991, 1262
SpeI	ACTAGT	1 cut(s)	32
SseBI	AGGCCT	1 cut(s)	2164
SsiI	CCGC	2 cut(s)	1332, 2010
SspI	AATATT	2 cut(s)	623, 1932
SspMI	CTAG	6 cut(s)	33, 674, 855, 1544, 1590, 1926
SstI	GAGCTC	1 cut(s)	1443
StuI	AGGCCT	1 cut(s)	2164
StyD4I	CCNGG	9 cut(s)	160, 544, 785, 1020, 1234, 1434, 1725, 1835, 2335
StyI	CCWWGG	4 cut(s)	117, 638, 1594, 2316
TaaI	ACNGT	4 cut(s)	220, 850, 1142, 1764
TaiI	ACGT	4 cut(s)	186, 1371, 1783, 2224
TaqI	TCGA	3 cut(s)	170, 238, 1261
TatI	WGTACW	4 cut(s)	29, 726, 735, 1759
TauI	GCSGC	2 cut(s)	1334, 2012
TfiI	GAWTC	9 cut(s)	380, 654, 942, 1663, 1832, 1897, 2180, 2266, 2387
Tru1I	TTAA	7 cut(s)	501, 776, 1355, 1391, 1602, 1934, 2189
Tru9I	TTAA	7 cut(s)	501, 776, 1355, 1391, 1602, 1934, 2189
TscAI	CASTG	6 cut(s)	106, 118, 664, 903, 1060, 1341
TseFI	GTSAC	3 cut(s)	406, 954, 984
TseI	GCWGC	2 cut(s)	1017, 1191
Tsp45I	GTSAC	3 cut(s)	406, 954, 984
TspGWI	ACGGA	1 cut(s)	1734
TspRI	CASTG	6 cut(s)	106, 118, 664, 903, 1060, 1341
Van91I	CCANNNNNTGG	1 cut(s)	644
VpaK11BI	GGWCC	3 cut(s)	1383, 1432, 1523
XagI	CCTNNNNNAGG	1 cut(s)	2376
XapI	RAATTY	7 cut(s)	189, 526, 551, 970, 1049, 1559, 1905
XbaI	TCTAGA	1 cut(s)	854
XceI	RCATGY	2 cut(s)	736, 1714
XcmI	CCANNNNNNNNNTGG	5 cut(s)	807, 1723, 1793, 2126, 2416
XmiI	GTMKAC	2 cut(s)	350, 934
XspI	CTAG	6 cut(s)	33, 674, 855, 1544, 1590, 1926
ZrmI	AGTACT	2 cut(s)	31, 1761
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.