Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000207

Physical Location & Seq

Genomic Coordinates Forward (+)

28879838 .. 28883343

Gene Structure 3506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2421 bp

ATGGGTGATGTTTGTTTTGTGGTGTTTAGTACTAGTTTGCTCTTTCTGTTGATCACAGTTTCTTTTGCAGTTGACAGCATCAGTCACTCGCAGTCTATCCGTGATAACGGCAGCACCTTGGTTTCAAGTGATGGAAGCTTTGAGCTGGGGTTCTTCAGTCCAGGTAACTCGAAAAATCGTTACTTGGGAATTTGGTACAAAAACATCCCAGTTAAAACTGTTGTTTGGGTTGCAAATCGATGCAAACCGATTGATGACTCATCCGGTGTGCTGATGATAAACAGCACAGGATATCTTGTGCTGTTGGGTCAGAATAGGGGTGTATTTTGGTGGGCAAGTTTAGCGAAGTATGCACAGAGTACAATGGTACAGCTATTAGATTCTGGAAACTTAGTAGTAAGAGATGTCACAGATGGAAAGTCATTGTGGCAAAGCTTCGATTATCCTTCTGATACATTGTTATCGGAAATGAAGATGGGATGGGACTTTAGGACAGGTCTTAAAAGGGGATTATCAGCATGGAAAAATTCAGAAGACCCATGTCCAGGGGAATTCACTTGTGGGATTGAAATGGAACCTCATGCATACCCTGAGGTATATTTTCGGAAAGGTGGTCTGAAATATTATCGTTCTGGCCCATGGAATGGCCAAGAATTCAGTGGTGCAGCAGCACTAAGGCCTAATCCAATTTATAGTTTCGACTTTGTGTATGATAATGATGAAGTGTACTACATGTACAAACTTCGAAGCAAGTCTGTAATTTCAATCATGGTCTTAAATGGAACCACGAGCACACGTGATCGCCTTACATGGATTGAAGCAGAGCAAACTTGGAAGTTCTATGCATCAGTACCTAAAGATATCTGTGATCAATATAACCGCTGTGGAGCAAATGCAAATTGTATCATTAGTGACAGTCCAGTATGTCGATGTCTACAAGGATTCATGCCTAAGTCACCAGAGAAATGGAATTTGACAGACTGGTCACTTGGATGTATGCGCAAGAAACCCCTAAGCTGCCAGGAAAGTGATAAAGACAAGTTTGTCAAATTCACTAATTTGAAATTGCCGGATGCTACACATTCTTGGGTGGACAGAAGTATGAACATCAAGGAATGCAGAGCCGAATGCTTGAACAACTGTTCCTGTATGGCTTATACAAGCTTGGATATCAGAGCAGGAGGTTCTGGCTGCGCCATTTTGTTTGGTGATCTACTAGATATCAGAAAGCTTCCGGATGCTGGCCAGGATCTATACATTCGAATGTCGGCTTCAGAGATAGAGGATGATGGTAAAGTGAAGACAAGAATTATAGTTGCTGTTGTGATAGGCGCAGTGTTTTCAGGAATGCTCTTAGTTGGCTACTACGTCTATCGGAGCAGGACCAAATTGAAAGAGACAGAAAAACGAGAAGAAAATCTGAAGAAAAAAGGGGTACAAAACGAAGACCTGGAGCTCCAGATCTTCAACATAAGCTCAATAGCTCGTGCAACAGATAACTTTTCAGATGATATGAAGCTTGGAGAAGGTGGCTTTGGACCTGTTTACAGGGGGACACTAGCAAATGGACAAGAAATTGCTGTGAAGAGGCTTTCAAGCAGTTCTGGCCAAGGATTTAACGAGTTCATGAATGAAATTAAACTGATAGCCAAACTTCAGCACCGAAATCTTGTAAAGATTCTTGGTTGTTGCCTGCAAGAAGAGAAAATGCTGATGTATGAATACATGCCCAACAGAAGCCTGGACTTCTTCATTTTTGATCAAACAAGGGAAGAACTACTGTTAGATTGGCCTAAACGTTTCCACATCATTTGTGGAATTGCTCGGGGTCTCCTCTATCTCCACCAAGATTCCAGGCTAAGGATTATACATAGAGATCTAAAAGCAAGTAATGTTCTACTTGATGATGAAATGAATCCTAAAATTTCAGACTTTGGCTTGGCTAGAATATTAACCGGAGGAGATCAGACTGGAGGAAATACTAAGAGAGTGGTCGGGACATATGGCTATATGGCACCTGAATATGCTGCTGATGGGCTATTTTCTGTGAAATCCGATGTCTTTAGCTTTGGTATATTGGTGCTGGAGATTATAAGTGGAAGGAGAAACAAGGGATTTTATGATCCAGACAACAGCCATAATCTTATTGGAAATGCGAGAAAGCCCTTAGAATTGATTGATTCATGGTTAGAGAGCTCATGTAATCTATTGGAAGTGTTACGTTGCATTCAAGTTAGTCTTTTGTGCGTGCAACATCATCCTGAGGATCGGCCAAGCATGGCATCTGTGGTTATAATGTTGGGAAGTGATATTGCATTGGCTCAACCTAAACAACCTGGTTTCTTTATGGAAAAGAAACACGAAGCAAGCCCTGATATAGTTAATGAATCATCAACCATTTCGCTTTTCGAAGCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

806

Amino Acids

90.76

Weight (kDa)

6.47

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	73 - 175	1.9e-33	D-mannose binding lectin
S_locus_glycop	PF00954	209 - 319	1.3e-28	S-locus glycoprotein domain
PAN_2	PF08276	340 - 408	5.3e-20	PAN-like domain
Pkinase	PF00069	502 - 763	1.8e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	505 - 764	5.1e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27300
fragaria_vesca	FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica	MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica	Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis	pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis	RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata	RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora	Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii	Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa	Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha	Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana	Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	2093, 2294
AasI	GACNNNNNNGTC	2 cut(s)	982, 1043
Acc16I	TGCGCA	1 cut(s)	1001
AccB1I	GGYRCC	1 cut(s)	2014
AccB7I	CCANNNNNTGG	1 cut(s)	644
AccI	GTMKAC	1 cut(s)	934
AccIII	TCCGGA	1 cut(s)	1234
AciI	CCGC	1 cut(s)	880
AclI	AACGTT	1 cut(s)	1798
AclWI	GGATC	3 cut(s)	1257, 2117, 2274
AcoI	YGGCCR	4 cut(s)	646, 1243, 1606, 2270
AcsI	RAATTY	7 cut(s)	189, 526, 551, 653, 970, 1049, 1923
AcuI	CTGAAG	4 cut(s)	139, 1257, 1442, 1640
AcvI	CACGTG	1 cut(s)	797
AfaI	GTAC	8 cut(s)	31, 197, 361, 369, 728, 737, 852, 1437
AfiI	CCNNNNNNNGG	4 cut(s)	545, 644, 1241, 1860
AflIII	ACRYGT	2 cut(s)	732, 794
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	8 cut(s)	160, 544, 1020, 1245, 1449, 1740, 1853, 2335
AjuI	GAANNNNNNNTTGG	2 cut(s)	1518, 1550
AloI	GAACNNNNNNTCC	2 cut(s)	1127, 1159
Alw21I	GWGCWC	3 cut(s)	794, 1458, 2198
Alw26I	GTCTC	2 cut(s)	1391, 1835
AlwI	GGATC	3 cut(s)	1257, 2117, 2274
Ama87I	CYCGRG	1 cut(s)	1824
Aor13HI	TCCGGA	1 cut(s)	1234
AoxI	GGCC	7 cut(s)	634, 646, 677, 1243, 1606, 1790, 2270
ApeKI	GCWGC	6 cut(s)	111, 665, 668, 1017, 1191, 2027
ApoI	RAATTY	7 cut(s)	189, 526, 551, 653, 970, 1049, 1923
AspLEI	GCGC	3 cut(s)	1002, 1196, 1334
AspS9I	GGNCC	3 cut(s)	635, 1383, 1538
AsuHPI	GGTGA	3 cut(s)	17, 948, 1220
AsuII	TTCGAA	3 cut(s)	745, 1261, 2409
AvaI	CYCGRG	1 cut(s)	1824
AvaII	GGWCC	2 cut(s)	1383, 1538
AxyI	CCTNAGG	2 cut(s)	591, 2262
BalI	TGGCCA	3 cut(s)	648, 1245, 1608
BanI	GGYRCC	1 cut(s)	2014
BanII	GRGCYC	2 cut(s)	1458, 2198
BauI	CACGAG	2 cut(s)	787, 1485
BbrPI	CACGTG	1 cut(s)	797
BbsI	GAAGAC	3 cut(s)	540, 1307, 1452
Bbv12I	GWGCWC	3 cut(s)	794, 1458, 2198
BbvI	GCAGC	6 cut(s)	123, 677, 680, 1004, 1178, 2014
BccI	CCATC	6 cut(s)	125, 407, 469, 474, 1283, 2027
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	8 cut(s)	162, 546, 1022, 1247, 1451, 1742, 1855, 2337
BclI	TGATCA	3 cut(s)	51, 868, 1759
BcoDI	GTCTC	2 cut(s)	1391, 1835
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	4 cut(s)	33, 1217, 1559, 1944
BglII	AGATCT	2 cut(s)	1461, 1876
BisI	GCNGC	6 cut(s)	112, 666, 669, 1018, 1192, 2028
BlsI	GCNGC	6 cut(s)	113, 667, 670, 1019, 1193, 2029
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	8 cut(s)	162, 546, 1022, 1247, 1451, 1742, 1855, 2337
Bme18I	GGWCC	2 cut(s)	1383, 1538
BmeT110I	CYCGRG	1 cut(s)	1824
BmgT120I	GGNCC	3 cut(s)	635, 1383, 1538
BmiI	GGNNCC	3 cut(s)	576, 784, 2016
BmrFI	CCNGG	8 cut(s)	162, 546, 1022, 1247, 1451, 1742, 1855, 2337
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	6 cut(s)	87, 230, 854, 1063, 1228, 2291
BmuI	ACTGGG	1 cut(s)	203
BoxI	GACNNNNGTC	1 cut(s)	540
BpiI	GAAGAC	3 cut(s)	540, 1307, 1452
BpmI	CTGGAG	4 cut(s)	1442, 1472, 1992, 2105
Bpu10I	CCTNAGC	2 cut(s)	1013, 1859
Bpu14I	TTCGAA	3 cut(s)	745, 1261, 2409
Bsa29I	ATCGAT	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	797
BsaI	GGTCTC	1 cut(s)	1835
BsaJI	CCNNGG	4 cut(s)	117, 545, 638, 1609
BsaWI	WCCGGW	3 cut(s)	263, 1234, 1955
Bsc4I	CCNNNNNNNGG	4 cut(s)	545, 644, 1241, 1860
Bse1I	ACTGG	4 cut(s)	209, 920, 986, 1975
Bse21I	CCTNAGG	2 cut(s)	591, 2262
BseAI	TCCGGA	1 cut(s)	1234
BseBI	CCWGG	8 cut(s)	162, 546, 1022, 1247, 1451, 1742, 1855, 2337
BseCI	ATCGAT	1 cut(s)	238
BseDI	CCNNGG	4 cut(s)	117, 545, 638, 1609
BseGI	GGATG	8 cut(s)	204, 260, 485, 998, 1078, 1243, 1291, 2257
BseLI	CCNNNNNNNGG	4 cut(s)	545, 644, 1241, 1860
BseMII	CTCAG	2 cut(s)	582, 2253
BseNI	ACTGG	4 cut(s)	209, 920, 986, 1975
BseRI	GAGGAG	2 cut(s)	1823, 1974
BseXI	GCAGC	6 cut(s)	123, 677, 680, 1004, 1178, 2014
BseYI	CCCAGC	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	684
BshFI	GGCC	7 cut(s)	636, 648, 679, 1245, 1608, 1792, 2272
BshNI	GGYRCC	1 cut(s)	2014
BshVI	ATCGAT	1 cut(s)	238
BsiHKAI	GWGCWC	3 cut(s)	794, 1458, 2198
BsiHKCI	CYCGRG	1 cut(s)	1824
BsiSI	CCGG	4 cut(s)	264, 1070, 1235, 1956
BslFI	GGGAC	3 cut(s)	497, 1567, 2011
BslI	CCNNNNNNNGG	4 cut(s)	545, 644, 1241, 1860
BsmAI	GTCTC	2 cut(s)	1391, 1835
BsmFI	GGGAC	3 cut(s)	497, 1567, 2011
BsmI	GAATGC	4 cut(s)	1121, 1133, 1353, 2226
BsnI	GGCC	7 cut(s)	636, 648, 679, 1245, 1608, 1792, 2272
Bso31I	GGTCTC	1 cut(s)	1835
BsoBI	CYCGRG	1 cut(s)	1824
Bsp119I	TTCGAA	3 cut(s)	745, 1261, 2409
Bsp1286I	GDGCHC	3 cut(s)	794, 1458, 2198
Bsp13I	TCCGGA	1 cut(s)	1234
Bsp1407I	TGTACA	1 cut(s)	735
Bsp19I	CCATGG	1 cut(s)	638
BspACI	CCGC	1 cut(s)	880
BspANI	GGCC	7 cut(s)	636, 648, 679, 1245, 1608, 1792, 2272
BspCNI	CTCAG	2 cut(s)	583, 2254
BspDI	ATCGAT	1 cut(s)	238
BspEI	TCCGGA	1 cut(s)	1234
BspHI	TCATGA	1 cut(s)	1626
BspLI	GGNNCC	3 cut(s)	576, 784, 2016
BspPI	GGATC	3 cut(s)	1257, 2117, 2274
BspT104I	TTCGAA	3 cut(s)	745, 1261, 2409
BspT107I	GGYRCC	1 cut(s)	2014
BspTNI	GGTCTC	1 cut(s)	1835
BsrGI	TGTACA	1 cut(s)	735
BsrI	ACTGG	4 cut(s)	209, 920, 986, 1975
BssECI	CCNNGG	4 cut(s)	117, 545, 638, 1609
BssSI	CACGAG	2 cut(s)	787, 1485
BssT1I	CCWWGG	3 cut(s)	117, 638, 1609
Bst2BI	CACGAG	2 cut(s)	787, 1485
Bst2UI	CCWGG	8 cut(s)	162, 546, 1022, 1247, 1451, 1742, 1855, 2337
Bst4CI	ACNGT	5 cut(s)	58, 220, 917, 1142, 1782
Bst6I	CTCTTC	2 cut(s)	1580, 1695
BstAUI	TGTACA	1 cut(s)	735
BstBAI	YACGTR	1 cut(s)	797
BstBI	TTCGAA	3 cut(s)	745, 1261, 2409
BstC8I	GCNNGC	4 cut(s)	1243, 1694, 2249, 2368
BstDSI	CCRYGG	1 cut(s)	638
BstF5I	GGATG	8 cut(s)	204, 260, 485, 998, 1078, 1243, 1291, 2257
BstHHI	GCGC	3 cut(s)	1002, 1196, 1334
BstMAI	GTCTC	2 cut(s)	1391, 1835
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 350, 1605
BstNI	CCWGG	8 cut(s)	162, 546, 1022, 1247, 1451, 1742, 1855, 2337
BstNSI	RCATGY	2 cut(s)	736, 1729
BstPAI	GACNNNNGTC	1 cut(s)	540
BstSCI	CCNGG	8 cut(s)	160, 544, 1020, 1245, 1449, 1740, 1853, 2335
BstV1I	GCAGC	6 cut(s)	123, 677, 680, 1004, 1178, 2014
BstV2I	GAAGAC	3 cut(s)	540, 1307, 1452
BstX2I	RGATCY	3 cut(s)	1249, 1461, 1876
BstXI	CCANNNNNNTGG	1 cut(s)	966
BstYI	RGATCY	3 cut(s)	1249, 1461, 1876
Bsu15I	ATCGAT	1 cut(s)	238
Bsu36I	CCTNAGG	2 cut(s)	591, 2262
BsuRI	GGCC	7 cut(s)	636, 648, 679, 1245, 1608, 1792, 2272
BsuTUI	ATCGAT	1 cut(s)	238
BtgI	CCRYGG	1 cut(s)	638
BtsCI	GGATG	8 cut(s)	204, 260, 485, 998, 1078, 1243, 1291, 2257
BtsI	GCAGTG	1 cut(s)	1341
BtsIMutI	CAGTG	2 cut(s)	664, 1341
Cac8I	GCNNGC	4 cut(s)	1243, 1694, 2249, 2368
CciI	TCATGA	1 cut(s)	1626
CfoI	GCGC	3 cut(s)	1002, 1196, 1334
Cfr13I	GGNCC	3 cut(s)	635, 1383, 1538
ClaI	ATCGAT	1 cut(s)	238
CsiI	ACCWGGT	1 cut(s)	2335
Csp6I	GTAC	8 cut(s)	30, 196, 360, 368, 727, 736, 851, 1436
CspCI	CAANNNNNGTGG	2 cut(s)	1793, 1828
CviQI	GTAC	8 cut(s)	30, 196, 360, 368, 727, 736, 851, 1436
DrdI	GACNNNNNNGTC	2 cut(s)	982, 1043
DseDI	GACNNNNNNGTC	2 cut(s)	982, 1043
EaeI	YGGCCR	4 cut(s)	646, 1243, 1606, 2270
Eam1104I	CTCTTC	2 cut(s)	1580, 1695
EarI	CTCTTC	2 cut(s)	1580, 1695
Ecl136II	GAGCTC	2 cut(s)	1456, 2196
Eco130I	CCWWGG	3 cut(s)	117, 638, 1609
Eco147I	AGGCCT	1 cut(s)	679
Eco24I	GRGCYC	2 cut(s)	1458, 2198
Eco31I	GGTCTC	1 cut(s)	1835
Eco32I	GATATC	4 cut(s)	293, 862, 1171, 1222
Eco47I	GGWCC	2 cut(s)	1383, 1538
Eco53kI	GAGCTC	2 cut(s)	1456, 2196
Eco57I	CTGAAG	4 cut(s)	139, 1257, 1442, 1640
Eco72I	CACGTG	1 cut(s)	797
Eco81I	CCTNAGG	2 cut(s)	591, 2262
Eco88I	CYCGRG	1 cut(s)	1824
EcoICRI	GAGCTC	2 cut(s)	1456, 2196
EcoRI	GAATTC	2 cut(s)	551, 653
EcoRII	CCWGG	8 cut(s)	160, 544, 1020, 1245, 1449, 1740, 1853, 2335
EcoRV	GATATC	4 cut(s)	293, 862, 1171, 1222
EcoT14I	CCWWGG	3 cut(s)	117, 638, 1609
EcoT22I	ATGCAT	2 cut(s)	586, 847
EcoT38I	GRGCYC	2 cut(s)	1458, 2198
ErhI	CCWWGG	3 cut(s)	117, 638, 1609
FalI	AAGNNNNNCTT	2 cut(s)	2223, 2255
FaqI	GGGAC	3 cut(s)	497, 1567, 2011
FauNDI	CATATG	1 cut(s)	2002
FbaI	TGATCA	3 cut(s)	51, 868, 1759
FblI	GTMKAC	1 cut(s)	934
Fnu4HI	GCNGC	6 cut(s)	112, 666, 669, 1018, 1192, 2028
FokI	GGATG	8 cut(s)	191, 247, 492, 1005, 1085, 1250, 1298, 2244
FriOI	GRGCYC	2 cut(s)	1458, 2198
Fsp4HI	GCNGC	6 cut(s)	112, 666, 669, 1018, 1192, 2028
FspBI	CTAG	4 cut(s)	33, 1217, 1559, 1944
FspI	TGCGCA	1 cut(s)	1001
GlaI	GCGC	3 cut(s)	1001, 1195, 1333
GluI	GCNGC	6 cut(s)	112, 666, 669, 1018, 1192, 2028
GsaI	CCCAGC	1 cut(s)	149
GsuI	CTGGAG	4 cut(s)	1442, 1472, 1992, 2105
HaeIII	GGCC	7 cut(s)	636, 648, 679, 1245, 1608, 1792, 2272
HapII	CCGG	4 cut(s)	264, 1070, 1235, 1956
HhaI	GCGC	3 cut(s)	1002, 1196, 1334
Hin6I	GCGC	3 cut(s)	1000, 1194, 1332
HinP1I	GCGC	3 cut(s)	1000, 1194, 1332
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	5 cut(s)	136, 433, 1162, 1229, 1517
HinfI	GANTC	8 cut(s)	257, 380, 942, 1678, 1850, 1915, 2180, 2387
HpaII	CCGG	4 cut(s)	264, 1070, 1235, 1956
HphI	GGTGA	3 cut(s)	17, 948, 1220
Hpy166II	GTNNAC	5 cut(s)	73, 727, 935, 1093, 1546
Hpy188III	TCNNGA	8 cut(s)	384, 1235, 1344, 1459, 1627, 1996, 2126, 2261
Hpy8I	GTNNAC	5 cut(s)	73, 727, 935, 1093, 1546
HpyAV	CCTTC	3 cut(s)	456, 1520, 2094
HpyCH4III	ACNGT	5 cut(s)	58, 220, 917, 1142, 1782
HpyCH4IV	ACGT	4 cut(s)	796, 1368, 1798, 2221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 350, 1605
HpySE526I	ACGT	4 cut(s)	796, 1368, 1798, 2221
HspAI	GCGC	3 cut(s)	1000, 1194, 1332
Kpn2I	TCCGGA	1 cut(s)	1234
Ksp22I	TGATCA	3 cut(s)	51, 868, 1759
LmnI	GCTCC	4 cut(s)	887, 1377, 1453, 1461
Lsp1109I	GCAGC	6 cut(s)	123, 677, 680, 1004, 1178, 2014
LweI	GCATC	6 cut(s)	87, 230, 854, 1063, 1228, 2291
MabI	ACCWGGT	1 cut(s)	2335
MaeI	CTAG	4 cut(s)	33, 1217, 1559, 1944
MaeII	ACGT	4 cut(s)	796, 1368, 1798, 2221
MaeIII	GTNAC	8 cut(s)	83, 164, 179, 406, 911, 954, 984, 2217
MflI	RGATCY	3 cut(s)	1249, 1461, 1876
MhlI	GDGCHC	3 cut(s)	794, 1458, 2198
MlsI	TGGCCA	3 cut(s)	648, 1245, 1608
MluNI	TGGCCA	3 cut(s)	648, 1245, 1608
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	9 cut(s)	586, 588, 1175, 1276, 1581, 1844, 1952, 1967, 2257
Mox20I	TGGCCA	3 cut(s)	648, 1245, 1608
Mph1103I	ATGCAT	2 cut(s)	586, 847
MroI	TCCGGA	1 cut(s)	1234
MscI	TGGCCA	3 cut(s)	648, 1245, 1608
MseI	TTAA	7 cut(s)	213, 501, 776, 1617, 1638, 1952, 2382
MslI	CAYNNNNRTG	2 cut(s)	991, 1262
Msp20I	TGGCCA	3 cut(s)	648, 1245, 1608
MspA1I	CMGCKG	1 cut(s)	882
MspI	CCGG	4 cut(s)	264, 1070, 1235, 1956
MspR9I	CCNGG	8 cut(s)	162, 546, 1022, 1247, 1451, 1742, 1855, 2337
Mva1269I	GAATGC	4 cut(s)	1121, 1133, 1353, 2226
MvaI	CCWGG	8 cut(s)	162, 546, 1022, 1247, 1451, 1742, 1855, 2337
MwoI	GCNNNNNNNGC	3 cut(s)	341, 350, 1605
NcoI	CCATGG	1 cut(s)	638
NdeI	CATATG	1 cut(s)	2002
NlaIV	GGNNCC	3 cut(s)	576, 784, 2016
NmuCI	GTSAC	5 cut(s)	83, 406, 911, 954, 984
NsbI	TGCGCA	1 cut(s)	1001
NsiI	ATGCAT	2 cut(s)	586, 847
NspI	RCATGY	2 cut(s)	736, 1729
NspV	TTCGAA	3 cut(s)	745, 1261, 2409
PagI	TCATGA	1 cut(s)	1626
PceI	AGGCCT	1 cut(s)	679
PciI	ACATGT	1 cut(s)	732
PctI	GAATGC	4 cut(s)	1121, 1133, 1353, 2226
PfeI	GAWTC	7 cut(s)	380, 942, 1678, 1850, 1915, 2180, 2387
PflMI	CCANNNNNTGG	1 cut(s)	644
PkrI	GCNGC	6 cut(s)	113, 667, 670, 1019, 1193, 2029
PleI	GAGTC	1 cut(s)	251
PmaCI	CACGTG	1 cut(s)	797
PmlI	CACGTG	1 cut(s)	797
PpsI	GAGTC	1 cut(s)	251
Ppu21I	YACGTR	1 cut(s)	797
PscI	ACATGT	1 cut(s)	732
PshAI	GACNNNNGTC	1 cut(s)	540
PsiI	TTATAA	2 cut(s)	2093, 2294
Psp124BI	GAGCTC	2 cut(s)	1458, 2198
Psp1406I	AACGTT	1 cut(s)	1798
Psp6I	CCWGG	8 cut(s)	160, 544, 1020, 1245, 1449, 1740, 1853, 2335
PspCI	CACGTG	1 cut(s)	797
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	8 cut(s)	160, 544, 1020, 1245, 1449, 1740, 1853, 2335
PspN4I	GGNNCC	3 cut(s)	576, 784, 2016
PspPI	GGNCC	3 cut(s)	635, 1383, 1538
PsuI	RGATCY	3 cut(s)	1249, 1461, 1876
RsaI	GTAC	8 cut(s)	31, 197, 361, 369, 728, 737, 852, 1437
RsaNI	GTAC	8 cut(s)	30, 196, 360, 368, 727, 736, 851, 1436
RseI	CAYNNNNRTG	2 cut(s)	991, 1262
SacI	GAGCTC	2 cut(s)	1458, 2198
SaqAI	TTAA	7 cut(s)	213, 501, 776, 1617, 1638, 1952, 2382
SatI	GCNGC	6 cut(s)	112, 666, 669, 1018, 1192, 2028
Sau96I	GGNCC	3 cut(s)	635, 1383, 1538
ScaI	AGTACT	1 cut(s)	31
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	8 cut(s)	162, 546, 1022, 1247, 1451, 1742, 1855, 2337
SduI	GDGCHC	3 cut(s)	794, 1458, 2198
SexAI	ACCWGGT	1 cut(s)	2335
SfaNI	GCATC	6 cut(s)	87, 230, 854, 1063, 1228, 2291
SfuI	TTCGAA	3 cut(s)	745, 1261, 2409
SinI	GGWCC	2 cut(s)	1383, 1538
SmiMI	CAYNNNNRTG	2 cut(s)	991, 1262
SpeI	ACTAGT	1 cut(s)	32
SseBI	AGGCCT	1 cut(s)	679
SsiI	CCGC	1 cut(s)	880
SspI	AATATT	2 cut(s)	623, 1950
SspMI	CTAG	4 cut(s)	33, 1217, 1559, 1944
SstI	GAGCTC	2 cut(s)	1458, 2198
StuI	AGGCCT	1 cut(s)	679
StyD4I	CCNGG	8 cut(s)	160, 544, 1020, 1245, 1449, 1740, 1853, 2335
StyI	CCWWGG	3 cut(s)	117, 638, 1609
TaaI	ACNGT	5 cut(s)	58, 220, 917, 1142, 1782
TaiI	ACGT	4 cut(s)	799, 1371, 1801, 2224
TaqI	TCGA	8 cut(s)	170, 238, 438, 699, 745, 928, 1261, 2409
TatI	WGTACW	4 cut(s)	29, 359, 726, 735
TfiI	GAWTC	7 cut(s)	380, 942, 1678, 1850, 1915, 2180, 2387
Tru1I	TTAA	7 cut(s)	213, 501, 776, 1617, 1638, 1952, 2382
Tru9I	TTAA	7 cut(s)	213, 501, 776, 1617, 1638, 1952, 2382
TscAI	CASTG	2 cut(s)	664, 1341
TseFI	GTSAC	5 cut(s)	83, 406, 911, 954, 984
TseI	GCWGC	6 cut(s)	111, 665, 668, 1017, 1191, 2027
Tsp45I	GTSAC	5 cut(s)	83, 406, 911, 954, 984
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	664, 1341
Van91I	CCANNNNNTGG	1 cut(s)	644
VpaK11BI	GGWCC	2 cut(s)	1383, 1538
XapI	RAATTY	7 cut(s)	189, 526, 551, 653, 970, 1049, 1923
XceI	RCATGY	2 cut(s)	736, 1729
XcmI	CCANNNNNNNNNTGG	4 cut(s)	656, 1738, 1811, 2144
XmiI	GTMKAC	1 cut(s)	934
XspI	CTAG	4 cut(s)	33, 1217, 1559, 1944
ZrmI	AGTACT	1 cut(s)	31
Zsp2I	ATGCAT	2 cut(s)	586, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.