FvH4_3g15980

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000207
Physical Location & Seq
Reverse (-)
10059769 .. 10064841
5073 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15980.t3

Sequence Viewer

Length: 2001 bp
ATGAAGCTTGGTTGGAATTTGGTTACTGGCTTAGATAGGTATATTTCGTCCTGGAGGAGCACAGAAGATCCTGCTCAAGGAGAGTTTTCACTACGAATGGACACTCATGGTTTCCCCCAGATTTTTATCATGAAGGGAGCTAAGACACTGACTAGGGCAGGGACATGGAACGGTGTTGAATTAACTGGATATCAAGGAAGGCCAAATCCAGTAGCGGTTTTTGAATTTGTGATGACTAAGGATGAGGTCTATTATGAGTACACACTCGTCAACAAGTCAACATTTGCGAGATATGTATTGAACCCTTATGGCATTGCACAGTGGTTTACCTGGACAGATCACTCAACTAGTTGGGAACCGTTCTTGTCAACTCAAGCAGATCAGTGTGAAAATTATGCCTTTTGTGGCGCTAATGCTAGATGTAATGTCAGTAACACTCCTGTATGTTCATGCTTGAAAGGGTATGTGCCAAAATCTCCAAATGATTGGAACACAACGAATTGGTCCGAGGGATGTGTTCGTGAGACTCCATTAGCTTGCAGCTCTACAGATGGCTTTGTAAAGTACAGCAACTTTAAACTGCCAGACACATCTTCTTCGTGGTATGACAAGAGAATGAGCCTCAAGGAGTGCCAGGGAATATGTTCGGGAAACTGTTCATGTTCTGCATATGCTAATTTAGATGTCAGGGAAGGCGGAAGTGGCTGCTTGCTTTGGTTTGGGAACCTCAATGACATTAGAGAGTTCACCTCTGATTCTCAAGACCTGTATATACGGCTGGCTGCTTCTGACCTAGATCCTATTGTGAAAAAGAGCAAGTTCAGCAAGAAAAAGCTAGCAGGAATTTTGATAGGCTTATCTGGTTTTCTTGTTGGAATGCTAATAGTTGGGTTCATTTTGTATAAACGGAAGAGAAAACTCAGAAATCAAGGAGCTAGAAGAAAGCTCGATTGCAGAAAGGAGGATTACAATGGAGAAGGCAGGGAAGACTTGGAGTTACCACTATTTGACTTGACCACTATTGCTAATGCCACTAACAATTTTTCAAGCAGCAACAAGCTGGGTGAGGGTGGTTTTGGACCTGTGTACAAGGGAACTTTGGATGGAGGAGAGGAAATTGCTGTAAAGAGGCTCTCAAAGAACTCTGGACAGGGATTGAGAGAGTTTAAAAATGAAGTTCTACTGATAGCCAAACTTCAGCATCGCAATCTTGTAAAGCTTCTTGGTTGTTGCATTCAAGAAGATGAAGAAATTCTAGTATATGAATACATGCCTAACAGAAGCTTGGACTTCTATATATTTGACGAAGAAAGACGGAAGTTGCTTGACTGGCCGACGTGCTTCCATATTATTGAGGGAATTGCTCGAGGGCTTCTTTATCTCCATCAAGACTCTAGATTGAGAATCATTCATAGAGATTTCAAGTCTAGCAATATCTTGCTGGACAATGATATGAACCCAAAGATATCAGACTTCGGCCTGGCTAAAACATTTGGGGGTGACCAAAGTGAAGACAGTACAAAAAGAGTGGTTGGAACATATGGTTATATGGCTCCTGAGTATGCAGTAGATGGGACTTTCTCAATGAAATCTGATGTATTTAGCTTTGGAGTTGTACTGCTAGAGATACTGAGCAGGAAAAAGAACAGGGGGTTTTGTCATCCAGATCATCATCTTAACCTTCTTGGACATGCATGGACATTATGGACTCAAAATAATCCTCTGGAACTGGTTGATGTGACGTTACGTGATTCTTGCAACAGAACCGTAGTGTTAATAAGGTGTCTTCATGTGGGCTTGCTATGTGTGCAACATGTACCTGAAGATAGACCAAGCATGTCATCTGTGGTTCTAATGTTGGGCAGTGAAGTTCAGTTGCCTTCACCAAAGCAGCCTGGTTTTTACACTGAACGAACTGTGCCGGTCACCGAATCAACATCAACAACCAGCGACTTGTATTCAACAAATAATTGCAGCACAATGTTTCTAGAGGCTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

667

Amino Acids

75.17

Weight (kDa)

6.86

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 70 - 176 2.4e-38 D-mannose binding lectin
S_locus_glycop PF00954 209 - 316 3.2e-23 S-locus glycoprotein domain
PAN_2 PF08276 337 - 403 6e-21 PAN-like domain
Pkinase PF00069 461 - 660 2.4e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 463 - 729 4.2e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 215, 696
AclWI GGATC 2 cut(s) 62, 791
AcoI YGGCCR 1 cut(s) 1331
AcsI RAATTY 4 cut(s) 16, 224, 843, 1251
AcuI CTGAAG 2 cut(s) 1181, 1842
AfaI GTAC 6 cut(s) 260, 566, 1088, 1519, 1617, 1818
AfiI CCNNNNNNNGG 1 cut(s) 77
AflIII ACRYGT 1 cut(s) 1813
AgsI TTSAA 8 cut(s) 179, 224, 301, 457, 1047, 1238, 1423, 1962
AhlI ACTAGT 1 cut(s) 347
AjiI CACGTC 1 cut(s) 1338
AjnI CCWGG 5 cut(s) 50, 329, 633, 1479, 1894
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 2 cut(s) 62, 791
Ama87I CYCGRG 1 cut(s) 1365
AoxI GGCC 3 cut(s) 200, 1331, 1477
ApeKI GCWGC 6 cut(s) 540, 705, 782, 1050, 1891, 1974
ApoI RAATTY 4 cut(s) 16, 224, 843, 1251
Asp700I GAANNNNTTC 3 cut(s) 643, 655, 1251
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 2 cut(s) 504, 1079
AsuHPI GGTGA 5 cut(s) 739, 1076, 1511, 1875, 1918
AsuNHI GCTAGC 1 cut(s) 835
AvaI CYCGRG 1 cut(s) 1365
AvaII GGWCC 2 cut(s) 504, 1079
BbsI GAAGAC 3 cut(s) 993, 1518, 1778
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 6 cut(s) 552, 692, 769, 1062, 1903, 1986
BccI CCATC 4 cut(s) 545, 1097, 1392, 1565
BceAI ACGGC 1 cut(s) 791
BciT130I CCWGG 5 cut(s) 52, 331, 635, 1481, 1896
BcoDI GTCTC 1 cut(s) 518
BcuI ACTAGT 1 cut(s) 347
BfmI CTRYAG 1 cut(s) 546
BfoI RGCGCY 1 cut(s) 411
BisI GCNGC 6 cut(s) 541, 706, 783, 1051, 1892, 1975
BlsI GCNGC 6 cut(s) 542, 707, 784, 1052, 1893, 1976
Bme1390I CCNGG 5 cut(s) 52, 331, 635, 1481, 1896
Bme18I GGWCC 2 cut(s) 504, 1079
BmeT110I CYCGRG 1 cut(s) 1365
BmgBI CACGTC 1 cut(s) 1338
BmgT120I GGNCC 2 cut(s) 504, 1079
BmiI GGNNCC 3 cut(s) 357, 725, 1554
BmrFI CCNGG 5 cut(s) 52, 331, 635, 1481, 1896
BmsI GCATC 1 cut(s) 1210
BmtI GCTAGC 1 cut(s) 839
BpiI GAAGAC 3 cut(s) 993, 1518, 1778
BplI GAGNNNNNCTC 2 cut(s) 734, 766
BpmI CTGGAG 1 cut(s) 73
BpuEI CTTGAG 4 cut(s) 60, 357, 608, 744
BsaAI YACGTR 1 cut(s) 1748
BsaBI GATNNNNATC 2 cut(s) 125, 1671
BsaJI CCNNGG 2 cut(s) 507, 634
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 1921
Bse1I ACTGG 5 cut(s) 31, 190, 209, 1334, 1734
Bse3DI GCAATG 1 cut(s) 312
Bse8I GATNNNNATC 2 cut(s) 125, 1671
BseBI CCWGG 5 cut(s) 52, 331, 635, 1481, 1896
BseDI CCNNGG 2 cut(s) 507, 634
BseGI GGATG 4 cut(s) 247, 518, 1108, 1660
BseJI GATNNNNATC 2 cut(s) 125, 1671
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 3 cut(s) 934, 1548, 1622
BseNI ACTGG 5 cut(s) 31, 190, 209, 1334, 1734
BseRI GAGGAG 2 cut(s) 70, 1122
BseXI GCAGC 6 cut(s) 552, 692, 769, 1062, 1903, 1986
BseYI CCCAGC 1 cut(s) 1060
BshFI GGCC 3 cut(s) 202, 1333, 1479
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 1365
BsiSI CCGG 1 cut(s) 1922
BslFI GGGAC 2 cut(s) 175, 1588
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 518
BsmFI GGGAC 2 cut(s) 175, 1588
BsmI GAATGC 2 cut(s) 882, 1233
BsnI GGCC 3 cut(s) 202, 1333, 1479
BsoBI CYCGRG 1 cut(s) 1365
Bsp1286I GDGCHC 1 cut(s) 62
Bsp1407I TGTACA 1 cut(s) 1086
Bsp143I GATC 5 cut(s) 67, 337, 379, 796, 1666
BspACI CCGC 2 cut(s) 215, 696
BspANI GGCC 3 cut(s) 202, 1333, 1479
BspCNI CTCAG 3 cut(s) 933, 1549, 1623
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 3 cut(s) 357, 725, 1554
BspOI GCTAGC 1 cut(s) 839
BspPI GGATC 2 cut(s) 62, 791
BsrDI GCAATG 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 1921
BsrGI TGTACA 1 cut(s) 1086
BsrI ACTGG 5 cut(s) 31, 190, 209, 1334, 1734
BssAI RCCGGY 1 cut(s) 1921
BssECI CCNNGG 2 cut(s) 507, 634
BssMI GATC 5 cut(s) 67, 337, 379, 796, 1666
Bst2UI CCWGG 5 cut(s) 52, 331, 635, 1481, 1896
Bst4CI ACNGT 7 cut(s) 173, 321, 360, 656, 1517, 1768, 1918
Bst6I CTCTTC 1 cut(s) 905
BstAUI TGTACA 1 cut(s) 1086
BstBAI YACGTR 1 cut(s) 1748
BstC8I GCNNGC 6 cut(s) 538, 710, 780, 837, 1799, 1996
BstDEI CTNAG 6 cut(s) 31, 141, 237, 920, 1557, 1631
BstEII GGTNACC 2 cut(s) 1499, 1924
BstENI CCTNNNNNAGG 1 cut(s) 75
BstF5I GGATG 4 cut(s) 247, 518, 1108, 1660
BstH2I RGCGCY 1 cut(s) 411
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 5 cut(s) 70, 340, 382, 799, 1669
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 5 cut(s) 67, 337, 379, 796, 1666
BstMWI GCNNNNNNNGC 4 cut(s) 702, 822, 1330, 1807
BstNI CCWGG 5 cut(s) 52, 331, 635, 1481, 1896
BstNSI RCATGY 4 cut(s) 1273, 1694, 1817, 1840
BstPI GGTNACC 2 cut(s) 1499, 1924
BstSCI CCNGG 5 cut(s) 50, 329, 633, 1479, 1894
BstSFI CTRYAG 1 cut(s) 546
BstV1I GCAGC 6 cut(s) 552, 692, 769, 1062, 1903, 1986
BstV2I GAAGAC 3 cut(s) 993, 1518, 1778
BstX2I RGATCY 2 cut(s) 67, 796
BstXI CCANNNNNNTGG 1 cut(s) 486
BstYI RGATCY 2 cut(s) 67, 796
BsuRI GGCC 3 cut(s) 202, 1333, 1479
BtgZI GCGATG 1 cut(s) 1187
BtrI CACGTC 1 cut(s) 1338
BtsCI GGATG 4 cut(s) 247, 518, 1108, 1660
BtsI GCAGTG 1 cut(s) 1870
BtsIMutI CAGTG 5 cut(s) 146, 326, 389, 1870, 1905
Cac8I GCNNGC 6 cut(s) 538, 710, 780, 837, 1799, 1996
CciI TCATGA 1 cut(s) 129
CfoI GCGC 1 cut(s) 410
Cfr10I RCCGGY 1 cut(s) 1921
Cfr13I GGNCC 2 cut(s) 504, 1079
Csp6I GTAC 6 cut(s) 259, 565, 1087, 1518, 1616, 1817
CspCI CAANNNNNGTGG 2 cut(s) 1509, 1544
CviQI GTAC 6 cut(s) 259, 565, 1087, 1518, 1616, 1817
DdeI CTNAG 6 cut(s) 31, 141, 237, 920, 1557, 1631
DpnI GATC 5 cut(s) 69, 339, 381, 798, 1668
DpnII GATC 5 cut(s) 67, 337, 379, 796, 1666
DraI TTTAAA 2 cut(s) 577, 1168
EaeI YGGCCR 1 cut(s) 1331
Eam1104I CTCTTC 1 cut(s) 905
EarI CTCTTC 1 cut(s) 905
EciI GGCGGA 1 cut(s) 711
Eco32I GATATC 2 cut(s) 191, 1467
Eco47I GGWCC 2 cut(s) 504, 1079
Eco57I CTGAAG 2 cut(s) 1181, 1842
Eco88I CYCGRG 1 cut(s) 1365
Eco91I GGTNACC 2 cut(s) 1499, 1924
EcoNI CCTNNNNNAGG 1 cut(s) 75
EcoO65I GGTNACC 2 cut(s) 1499, 1924
EcoRII CCWGG 5 cut(s) 50, 329, 633, 1479, 1894
EcoRV GATATC 2 cut(s) 191, 1467
EcoT22I ATGCAT 1 cut(s) 1696
FaqI GGGAC 2 cut(s) 175, 1588
FauNDI CATATG 2 cut(s) 670, 1540
Fnu4HI GCNGC 6 cut(s) 541, 706, 783, 1051, 1892, 1975
FokI GGATG 4 cut(s) 254, 525, 1115, 1647
Fsp4HI GCNGC 6 cut(s) 541, 706, 783, 1051, 1892, 1975
GlaI GCGC 1 cut(s) 409
GluI GCNGC 6 cut(s) 541, 706, 783, 1051, 1892, 1975
GsaI CCCAGC 1 cut(s) 1064
GsuI CTGGAG 1 cut(s) 73
HaeII RGCGCY 1 cut(s) 411
HaeIII GGCC 3 cut(s) 202, 1333, 1479
HapII CCGG 1 cut(s) 1922
HhaI GCGC 1 cut(s) 410
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HincII GTYRAC 3 cut(s) 271, 279, 369
HindII GTYRAC 3 cut(s) 271, 279, 369
HindIII AAGCTT 3 cut(s) 5, 1217, 1282
HinfI GANTC 7 cut(s) 526, 755, 1391, 1404, 1708, 1751, 1931
HpaII CCGG 1 cut(s) 1922
HphI GGTGA 5 cut(s) 739, 1076, 1511, 1875, 1918
Hpy166II GTNNAC 7 cut(s) 261, 271, 279, 327, 369, 747, 1087
Hpy188I TCNGA 6 cut(s) 508, 754, 790, 923, 1471, 1594
Hpy8I GTNNAC 7 cut(s) 261, 271, 279, 327, 369, 747, 1087
Hpy99I CGWCG 1 cut(s) 1339
HpyAV CCTTC 6 cut(s) 127, 192, 686, 971, 1691, 1890
HpyCH4III ACNGT 7 cut(s) 173, 321, 360, 656, 1517, 1768, 1918
HpyCH4IV ACGT 3 cut(s) 1337, 1742, 1747
HpyF10VI GCNNNNNNNGC 4 cut(s) 702, 822, 1330, 1807
HpyF3I CTNAG 6 cut(s) 31, 141, 237, 920, 1557, 1631
HpySE526I ACGT 3 cut(s) 1337, 1742, 1747
HspAI GCGC 1 cut(s) 408
Kzo9I GATC 5 cut(s) 67, 337, 379, 796, 1666
LmnI GCTCC 4 cut(s) 57, 137, 932, 1558
Lsp1109I GCAGC 6 cut(s) 552, 692, 769, 1062, 1903, 1986
LweI GCATC 1 cut(s) 1210
MaeII ACGT 3 cut(s) 1337, 1742, 1747
MaeIII GTNAC 7 cut(s) 22, 431, 996, 1499, 1738, 1743, 1924
MalI GATC 5 cut(s) 69, 339, 381, 798, 1668
MboI GATC 5 cut(s) 67, 337, 379, 796, 1666
MflI RGATCY 2 cut(s) 67, 796
MhlI GDGCHC 1 cut(s) 62
MlyI GAGTC 3 cut(s) 520, 1385, 1702
MmeI TCCRAC 2 cut(s) 853, 1513
Mph1103I ATGCAT 1 cut(s) 1696
MroXI GAANNNNTTC 3 cut(s) 643, 655, 1251
MseI TTAA 5 cut(s) 182, 576, 1167, 1677, 1775
MspI CCGG 1 cut(s) 1922
MspR9I CCNGG 5 cut(s) 52, 331, 635, 1481, 1896
Mva1269I GAATGC 2 cut(s) 882, 1233
MvaI CCWGG 5 cut(s) 52, 331, 635, 1481, 1896
MwoI GCNNNNNNNGC 4 cut(s) 702, 822, 1330, 1807
NdeI CATATG 2 cut(s) 670, 1540
NdeII GATC 5 cut(s) 67, 337, 379, 796, 1666
NheI GCTAGC 1 cut(s) 835
NlaIV GGNNCC 3 cut(s) 357, 725, 1554
NmuCI GTSAC 3 cut(s) 1499, 1738, 1924
NsiI ATGCAT 1 cut(s) 1696
NspI RCATGY 4 cut(s) 1273, 1694, 1817, 1840
PaeR7I CTCGAG 1 cut(s) 1365
PagI TCATGA 1 cut(s) 129
PciI ACATGT 1 cut(s) 1813
PctI GAATGC 2 cut(s) 882, 1233
PdmI GAANNNNTTC 3 cut(s) 643, 655, 1251
PfeI GAWTC 4 cut(s) 755, 1404, 1751, 1931
PfoI TCCNGGA 1 cut(s) 50
PkrI GCNGC 6 cut(s) 542, 707, 784, 1052, 1893, 1976
PleI GAGTC 3 cut(s) 520, 1385, 1702
PpsI GAGTC 3 cut(s) 520, 1385, 1702
Ppu21I YACGTR 1 cut(s) 1748
PscI ACATGT 1 cut(s) 1813
Psp6I CCWGG 5 cut(s) 50, 329, 633, 1479, 1894
PspEI GGTNACC 2 cut(s) 1499, 1924
PspFI CCCAGC 1 cut(s) 1060
PspGI CCWGG 5 cut(s) 50, 329, 633, 1479, 1894
PspN4I GGNNCC 3 cut(s) 357, 725, 1554
PspPI GGNCC 2 cut(s) 504, 1079
PspXI VCTCGAGB 1 cut(s) 1365
PsuI RGATCY 2 cut(s) 67, 796
RsaI GTAC 6 cut(s) 260, 566, 1088, 1519, 1617, 1818
RsaNI GTAC 6 cut(s) 259, 565, 1087, 1518, 1616, 1817
SaqAI TTAA 5 cut(s) 182, 576, 1167, 1677, 1775
SatI GCNGC 6 cut(s) 541, 706, 783, 1051, 1892, 1975
Sau3AI GATC 5 cut(s) 67, 337, 379, 796, 1666
Sau96I GGNCC 2 cut(s) 504, 1079
SchI GAGTC 3 cut(s) 520, 1385, 1702
ScrFI CCNGG 5 cut(s) 52, 331, 635, 1481, 1896
SduI GDGCHC 1 cut(s) 62
SfaNI GCATC 1 cut(s) 1210
SfcI CTRYAG 1 cut(s) 546
Sfr274I CTCGAG 1 cut(s) 1365
SinI GGWCC 2 cut(s) 504, 1079
SlaI CTCGAG 1 cut(s) 1365
SmlI CTYRAG 5 cut(s) 75, 372, 623, 759, 1365
SmoI CTYRAG 5 cut(s) 75, 372, 623, 759, 1365
SpeI ACTAGT 1 cut(s) 347
SsiI CCGC 2 cut(s) 215, 696
StyD4I CCNGG 5 cut(s) 50, 329, 633, 1479, 1894
TaaI ACNGT 7 cut(s) 173, 321, 360, 656, 1517, 1768, 1918
TaiI ACGT 3 cut(s) 1340, 1745, 1750
TaqI TCGA 2 cut(s) 948, 1366
TatI WGTACW 5 cut(s) 258, 564, 1086, 1517, 1615
TfiI GAWTC 4 cut(s) 755, 1404, 1751, 1931
Tru1I TTAA 5 cut(s) 182, 576, 1167, 1677, 1775
Tru9I TTAA 5 cut(s) 182, 576, 1167, 1677, 1775
TscAI CASTG 5 cut(s) 153, 326, 389, 1870, 1912
TseFI GTSAC 3 cut(s) 1499, 1738, 1924
TseI GCWGC 6 cut(s) 540, 705, 782, 1050, 1891, 1974
Tsp45I GTSAC 3 cut(s) 1499, 1738, 1924
TspGWI ACGGA 2 cut(s) 922, 1330
TspRI CASTG 5 cut(s) 153, 326, 389, 1870, 1912
VpaK11BI GGWCC 2 cut(s) 504, 1079
XagI CCTNNNNNAGG 1 cut(s) 75
XapI RAATTY 4 cut(s) 16, 224, 843, 1251
XbaI TCTAGA 2 cut(s) 1394, 1987
XceI RCATGY 4 cut(s) 1273, 1694, 1817, 1840
XhoI CTCGAG 1 cut(s) 1365
XmnI GAANNNNTTC 3 cut(s) 643, 655, 1251
Zsp2I ATGCAT 1 cut(s) 1696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.