Prupe.4G142500_v2.0.a1

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000207
Physical Location & Seq
Reverse (-)
8169014 .. 8170237
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G142500.1

Sequence Viewer

Length: 1224 bp
ACCTCCATTACAAATACACTAGGCACACTCTCTCCAAATCAATATATTAGAGATGATCAAACTCTAGTTTCAGCAGGTGGAACCTTTCAACTGGGATTCTTCAGCCCTGGTAAATTGACAGGCCGATACCTGGGGATATGGTACACTATTTCCAATGAGATAGTAGTATGGGTAGCCAACCGAGAAACACCACTTGATGATTCTTCCGGAGTTTTAAAGGTCACTGATCAAGGAGTTCTTGTCCTTCTCAATAGCTCAAACGGCATTGTATGGTCATCTAACTCATCAAGAACTGTAGATAATCCAGTATCACAACTATTGGATTCGGGAAATCTTGTTGTGAAAGATGCAAACGAAACTAACCCTGATAACTTCTTGTGGCAGAGTTTTGATTATCCTTGTGATACATTCCTACCAGAAATGAAGCTTGGTTGGGACTTCGTTACTGGTTTAGACAGGTATGTTTCGTGTTGGAAGAGCACAGAAGATCCTGCTCGAGGAGAGTTTTCACTATGGATGAGTCCTCACGGTTTACCACAACTTTTTGTTATGAAGGGAACTAAGATACAGACTAGATCAGGTTCATGGAACGGCGTTCAATTAACAGGATCTATGAGACGATCAACCCCATCTGAGTTTGAGTTTTTCTTAAATAAGGATGAGGTTTATTATGAGTACAGACTCCTAAACAGGTCTATTCCCTCAAGATATGTATTGACCCCATCTGGCATTGCACAGTGGTTCACATGGATTGAAAATACACATAGTTGGGAACCCTTCTTTTCAACCCAACAAGATGAGTGTGAAATTTATGCCTTCTGTGGTGCATATTCTAGCTGCGACACCAGTGATGCTCCTGTATGTGCATGCCTGAAGGGATTTATACCAAAATCGACAGAACATTGGAATTCACAAAATTGGTCTGATGGGTGTATTCGAAATACTCCATTAGCTTGCAGCTATAAAGATGAGTTCTTTAAATACACTAGCTTTAAATTGCCAGACACATCTTCCTCATGGTTTGATAAGAGCATGAGCCTCAACGAATGCAAGAGATTATGTTTGGAAAACTGCTCATGTACCGCATATGCAAATTTAGATATCAGGGATGGAGGAAGTGGCTGCTTACTTTGGTTCGGTAACCTCATTGACATAAGAGCCTTGCCATCTGATTCTCAAGACCTCTATATACGGCTGGCTTCTTCAGAACTAGGTAGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

408

Amino Acids

45.87

Weight (kDa)

4.74

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 65
AccIII TCCGGA 1 cut(s) 206
AciI CCGC 1 cut(s) 1083
AclWI GGATC 2 cut(s) 482, 616
AcsI RAATTY 3 cut(s) 807, 907, 1093
AcuI CTGAAG 3 cut(s) 85, 893, 1188
AfaI GTAC 3 cut(s) 143, 677, 1081
AfiI CCNNNNNNNGG 2 cut(s) 130, 497
AgsI TTSAA 4 cut(s) 89, 599, 755, 786
AjnI CCWGG 2 cut(s) 106, 129
AjuI GAANNNNNNNTTGG 2 cut(s) 411, 443
AluBI AGCT 7 cut(s) 255, 427, 837, 953, 960, 990, 1218
AluI AGCT 7 cut(s) 255, 427, 837, 953, 960, 990, 1218
Alw21I GWGCWC 1 cut(s) 482
Alw26I GTCTC 1 cut(s) 610
AlwI GGATC 2 cut(s) 482, 616
Ama87I CYCGRG 1 cut(s) 495
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 3 cut(s) 837, 957, 1122
ApoI RAATTY 3 cut(s) 807, 907, 1093
AsuII TTCGAA 1 cut(s) 937
AvaI CYCGRG 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 482
BbvI GCAGC 3 cut(s) 824, 969, 1109
BccI CCATC 5 cut(s) 637, 730, 920, 1103, 1174
BceAI ACGGC 3 cut(s) 277, 607, 1208
BciT130I CCWGG 2 cut(s) 108, 131
BclI TGATCA 2 cut(s) 55, 226
BcoDI GTCTC 1 cut(s) 610
BfaI CTAG 6 cut(s) 20, 65, 573, 834, 987, 1211
BfmI CTRYAG 1 cut(s) 294
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 3 cut(s) 838, 958, 1123
BlsI GCNGC 3 cut(s) 839, 959, 1124
Bme1390I CCNGG 2 cut(s) 108, 131
BmeT110I CYCGRG 1 cut(s) 495
BmiI GGNNCC 2 cut(s) 82, 774
BmrFI CCNGG 2 cut(s) 108, 131
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 2 cut(s) 337, 841
BmuI ACTGGG 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 937
BpuEI CTTGAG 2 cut(s) 688, 1161
BsaJI CCNNGG 2 cut(s) 106, 130
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 225, 255
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 497
Bse1I ACTGG 4 cut(s) 96, 305, 451, 846
Bse3DI GCAATG 1 cut(s) 729
BseAI TCCGGA 1 cut(s) 206
BseBI CCWGG 2 cut(s) 108, 131
BseDI CCNNGG 2 cut(s) 106, 130
BseGI GGATG 3 cut(s) 522, 664, 1114
BseLI CCNNNNNNNGG 2 cut(s) 130, 497
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 4 cut(s) 96, 305, 451, 846
BseRI GAGGAG 1 cut(s) 513
BseXI GCAGC 3 cut(s) 824, 969, 1109
BshFI GGCC 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 482
BsiHKCI CYCGRG 1 cut(s) 495
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 2 cut(s) 130, 497
BsmAI GTCTC 1 cut(s) 610
BsmBI CGTCTC 1 cut(s) 610
BsmFI GGGAC 1 cut(s) 449
BsmI GAATGC 1 cut(s) 1052
BsnI GGCC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 495
Bsp119I TTCGAA 1 cut(s) 937
Bsp1286I GDGCHC 1 cut(s) 482
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 6 cut(s) 55, 226, 487, 575, 608, 620
BspACI CCGC 1 cut(s) 1083
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 625
BspEI TCCGGA 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 82, 774
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 2 cut(s) 482, 616
BspQI GCTCTTC 1 cut(s) 470
BspT104I TTCGAA 1 cut(s) 937
BsrDI GCAATG 1 cut(s) 729
BsrI ACTGG 4 cut(s) 96, 305, 451, 846
BssECI CCNNGG 2 cut(s) 106, 130
BssMI GATC 6 cut(s) 55, 226, 487, 575, 608, 620
Bst2UI CCWGG 2 cut(s) 108, 131
Bst4CI ACNGT 3 cut(s) 295, 530, 738
Bst6I CTCTTC 1 cut(s) 470
BstBI TTCGAA 1 cut(s) 937
BstC8I GCNNGC 3 cut(s) 868, 955, 1197
BstDEI CTNAG 2 cut(s) 561, 633
BstEII GGTNACC 1 cut(s) 1139
BstENI CCTNNNNNAGG 1 cut(s) 495
BstF5I GGATG 3 cut(s) 522, 664, 1114
BstKTI GATC 6 cut(s) 58, 229, 490, 578, 611, 623
BstMAI GTCTC 1 cut(s) 610
BstMBI GATC 6 cut(s) 55, 226, 487, 575, 608, 620
BstMWI GCNNNNNNNGC 1 cut(s) 261
BstNI CCWGG 2 cut(s) 108, 131
BstNSI RCATGY 1 cut(s) 870
BstPI GGTNACC 1 cut(s) 1139
BstSCI CCNGG 2 cut(s) 106, 129
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 824, 969, 1109
BstX2I RGATCY 2 cut(s) 487, 608
BstYI RGATCY 2 cut(s) 487, 608
BsuRI GGCC 1 cut(s) 123
BtsCI GGATG 3 cut(s) 522, 664, 1114
BtsIMutI CAGTG 3 cut(s) 222, 743, 853
BveI ACCTGC 1 cut(s) 65
Cac8I GCNNGC 3 cut(s) 868, 955, 1197
Csp6I GTAC 3 cut(s) 142, 676, 1080
CviAII CATG 6 cut(s) 585, 747, 867, 1017, 1033, 1077
CviQI GTAC 3 cut(s) 142, 676, 1080
DdeI CTNAG 2 cut(s) 561, 633
DpnI GATC 6 cut(s) 57, 228, 489, 577, 610, 622
DpnII GATC 6 cut(s) 55, 226, 487, 575, 608, 620
DraI TTTAAA 3 cut(s) 216, 979, 994
Eam1104I CTCTTC 1 cut(s) 470
EarI CTCTTC 1 cut(s) 470
Eco32I GATATC 1 cut(s) 1102
Eco57I CTGAAG 3 cut(s) 85, 893, 1188
Eco88I CYCGRG 1 cut(s) 495
Eco91I GGTNACC 1 cut(s) 1139
EcoNI CCTNNNNNAGG 1 cut(s) 495
EcoO65I GGTNACC 1 cut(s) 1139
EcoRI GAATTC 1 cut(s) 907
EcoRII CCWGG 2 cut(s) 106, 129
EcoRV GATATC 1 cut(s) 1102
Esp3I CGTCTC 1 cut(s) 610
FaeI CATG 6 cut(s) 588, 750, 870, 1020, 1036, 1080
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FaqI GGGAC 1 cut(s) 449
FatI CATG 6 cut(s) 584, 746, 866, 1016, 1032, 1076
FauNDI CATATG 1 cut(s) 1087
FbaI TGATCA 2 cut(s) 55, 226
Fnu4HI GCNGC 3 cut(s) 838, 958, 1123
FokI GGATG 3 cut(s) 529, 671, 1121
Fsp4HI GCNGC 3 cut(s) 838, 958, 1123
FspBI CTAG 6 cut(s) 20, 65, 573, 834, 987, 1211
GluI GCNGC 3 cut(s) 838, 958, 1123
HaeIII GGCC 1 cut(s) 123
HapII CCGG 1 cut(s) 207
Hin1II CATG 6 cut(s) 588, 750, 870, 1020, 1036, 1080
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 6 cut(s) 96, 200, 323, 520, 681, 1172
HpaII CCGG 1 cut(s) 207
Hpy166II GTNNAC 3 cut(s) 144, 533, 744
Hpy188I TCNGA 4 cut(s) 634, 925, 1171, 1207
Hpy188III TCNNGA 5 cut(s) 207, 288, 327, 705, 1178
Hpy8I GTNNAC 3 cut(s) 144, 533, 744
HpyAV CCTTC 5 cut(s) 254, 547, 787, 826, 868
HpyCH4III ACNGT 3 cut(s) 295, 530, 738
HpyCH4V TGCA 7 cut(s) 350, 734, 827, 866, 957, 1050, 1091
HpyF10VI GCNNNNNNNGC 1 cut(s) 261
HpyF3I CTNAG 2 cut(s) 561, 633
Hsp92II CATG 6 cut(s) 588, 750, 870, 1020, 1036, 1080
Kpn2I TCCGGA 1 cut(s) 206
Ksp22I TGATCA 2 cut(s) 55, 226
Kzo9I GATC 6 cut(s) 55, 226, 487, 575, 608, 620
LguI GCTCTTC 1 cut(s) 470
LmnI GCTCC 1 cut(s) 859
Lsp1109I GCAGC 3 cut(s) 824, 969, 1109
LweI GCATC 2 cut(s) 337, 841
MaeI CTAG 6 cut(s) 20, 65, 573, 834, 987, 1211
MaeIII GTNAC 3 cut(s) 220, 442, 1139
MalI GATC 6 cut(s) 57, 228, 489, 577, 610, 622
MboI GATC 6 cut(s) 55, 226, 487, 575, 608, 620
MboII GAAGA 6 cut(s) 91, 195, 487, 497, 1002, 1194
MflI RGATCY 2 cut(s) 487, 608
MhlI GDGCHC 1 cut(s) 482
MluCI AATT 7 cut(s) 113, 599, 807, 907, 916, 995, 1093
MlyI GAGTC 2 cut(s) 529, 675
MmeI TCCRAC 1 cut(s) 452
MroI TCCGGA 1 cut(s) 206
MseI TTAA 5 cut(s) 215, 602, 650, 978, 993
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 2 cut(s) 108, 131
Mva1269I GAATGC 1 cut(s) 1052
MvaI CCWGG 2 cut(s) 108, 131
MwoI GCNNNNNNNGC 1 cut(s) 261
NdeI CATATG 1 cut(s) 1087
NdeII GATC 6 cut(s) 55, 226, 487, 575, 608, 620
NlaIII CATG 6 cut(s) 588, 750, 870, 1020, 1036, 1080
NlaIV GGNNCC 2 cut(s) 82, 774
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 1 cut(s) 870
NspV TTCGAA 1 cut(s) 937
PaeI GCATGC 1 cut(s) 870
PaeR7I CTCGAG 1 cut(s) 495
PaqCI CACCTGC 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 470
PctI GAATGC 1 cut(s) 1052
PfeI GAWTC 4 cut(s) 96, 200, 323, 1172
PkrI GCNGC 3 cut(s) 839, 959, 1124
PleI GAGTC 2 cut(s) 528, 675
PpsI GAGTC 2 cut(s) 528, 675
Psp6I CCWGG 2 cut(s) 106, 129
PspEI GGTNACC 1 cut(s) 1139
PspGI CCWGG 2 cut(s) 106, 129
PspN4I GGNNCC 2 cut(s) 82, 774
PspXI VCTCGAGB 1 cut(s) 495
PsuI RGATCY 2 cut(s) 487, 608
RsaI GTAC 3 cut(s) 143, 677, 1081
RsaNI GTAC 3 cut(s) 142, 676, 1080
SapI GCTCTTC 1 cut(s) 470
SaqAI TTAA 5 cut(s) 215, 602, 650, 978, 993
SatI GCNGC 3 cut(s) 838, 958, 1123
Sau3AI GATC 6 cut(s) 55, 226, 487, 575, 608, 620
SchI GAGTC 2 cut(s) 529, 675
ScrFI CCNGG 2 cut(s) 108, 131
SduI GDGCHC 1 cut(s) 482
SfaNI GCATC 2 cut(s) 337, 841
SfcI CTRYAG 1 cut(s) 294
Sfr274I CTCGAG 1 cut(s) 495
SfuI TTCGAA 1 cut(s) 937
SlaI CTCGAG 1 cut(s) 495
SmlI CTYRAG 3 cut(s) 495, 703, 1176
SmoI CTYRAG 3 cut(s) 495, 703, 1176
SphI GCATGC 1 cut(s) 870
Sse9I AATT 7 cut(s) 113, 599, 807, 907, 916, 995, 1093
SsiI CCGC 1 cut(s) 1083
SspMI CTAG 6 cut(s) 20, 65, 573, 834, 987, 1211
StyD4I CCNGG 2 cut(s) 106, 129
TaaI ACNGT 3 cut(s) 295, 530, 738
TaqI TCGA 3 cut(s) 496, 893, 937
TasI AATT 7 cut(s) 113, 599, 807, 907, 916, 995, 1093
TatI WGTACW 1 cut(s) 675
TfiI GAWTC 4 cut(s) 96, 200, 323, 1172
Tru1I TTAA 5 cut(s) 215, 602, 650, 978, 993
Tru9I TTAA 5 cut(s) 215, 602, 650, 978, 993
TscAI CASTG 3 cut(s) 229, 743, 853
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 3 cut(s) 837, 957, 1122
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 437, 566, 573
TspRI CASTG 3 cut(s) 229, 743, 853
XagI CCTNNNNNAGG 1 cut(s) 495
XapI RAATTY 3 cut(s) 807, 907, 1093
XceI RCATGY 1 cut(s) 870
XhoI CTCGAG 1 cut(s) 495
XspI CTAG 6 cut(s) 20, 65, 573, 834, 987, 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.