MD05G1214100.v1.1

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000207
Physical Location & Seq
Reverse (-)
34545350 .. 34546249
900 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1214100.v1.1.491

Sequence Viewer

Length: 846 bp
ATGACGTACTTTCCAAACCAAAGGTGTAGGGTCAATCAAGAAATCCAAGTCTTTCAATTGACTTTGATTTTTCCATCTTCTCCGCATAATTTTTTTGTATTAATTTCTTTGGATAAACCATGCAATCTCAGAATAACGATGCAAGCCTTGAGAAGTTTATTCATGTGCTTGTTCTTCTTATTCTCCCTCTTAAGAATCTCAGCTGCAACTGCACTGGTCACGATCACTCCGAGTGGATATATAAGAGATGGCGACACTCTGGTTTCAGTAGGTGGAAGCTATGAACTGGGATTCTTCAGCCCTGTTGTGTGGGTAGCCAACAGAGAAATACCACTTGGTGATTCTTCGGGACTTTTGAAGCTCACCAAGCAAGGAGTGCTGGTCCTCCTTCTCAATAGCTCAAACAGCATTGTGTGGTCATCGAATTCATCAAGAATTGCGGGGAATCCAGTATCGCAACTATTGGATTCTGGAAATCTTGTGGTCCAAGATAGGAAAGAAACTAACCCGGATAACTTCTTGTGGCAGAGTTTTGATTATCCTTGTGACACATTCCTACCGGAAATGAAGCTTGGTTGGGACGTGGTTACCGGTTTAGAGAGGTATATATCGTCTTGGAAGAGCACAGAAGATCCTGCTCCAGGGGAGTTTTCGGTACGAATAGATTATCGTGGCTTACCACAACTTCTTCTTATGAAAGGAGCTAAGATACAGGCTAGAGCAGGGTCATGGAATGGCCTTTATTTGACAGGACATGGCGGTTTTGTGATGAACAGGTCTATTTTGAACATTTACAATGGTTCTCGAGATTTAAGAAGTACCGTTTCTTCAAGCCAGGACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

282

Amino Acids

31.35

Weight (kDa)

8.67

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 102 - 207 1.3e-37 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 83, 440, 759
AclWI GGATC 1 cut(s) 626
AcsI RAATTY 1 cut(s) 424
AcuI CTGAAG 1 cut(s) 280
AdeI CACNNNGTG 1 cut(s) 338
AfaI GTAC 3 cut(s) 8, 657, 820
AfiI CCNNNNNNNGG 1 cut(s) 641
AflII CTTAAG 1 cut(s) 190
AgeI ACCGGT 1 cut(s) 590
AgsI TTSAA 4 cut(s) 56, 358, 787, 831
AjiI CACGTC 1 cut(s) 583
AjnI CCWGG 2 cut(s) 640, 834
AjuI GAANNNNNNNTTGG 4 cut(s) 318, 350, 555, 587
AluBI AGCT 6 cut(s) 203, 279, 361, 399, 571, 704
AluI AGCT 6 cut(s) 203, 279, 361, 399, 571, 704
Alw21I GWGCWC 1 cut(s) 626
AlwI GGATC 1 cut(s) 626
Ama87I CYCGRG 1 cut(s) 804
AoxI GGCC 1 cut(s) 736
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 1 cut(s) 424
AseI ATTAAT 1 cut(s) 101
AsiGI ACCGGT 1 cut(s) 590
AspS9I GGNCC 2 cut(s) 382, 484
AsuC2I CCSGG 1 cut(s) 509
AsuHPI GGTGA 2 cut(s) 350, 355
AvaI CYCGRG 1 cut(s) 804
AvaII GGWCC 2 cut(s) 382, 484
BarI GAAGNNNNNNTAC 2 cut(s) 811, 843
Bbv12I GWGCWC 1 cut(s) 626
BbvI GCAGC 1 cut(s) 190
BccI CCATC 2 cut(s) 82, 242
BciT130I CCWGG 2 cut(s) 642, 836
BcnI CCSGG 1 cut(s) 509
BfaI CTAG 1 cut(s) 717
BfrI CTTAAG 1 cut(s) 190
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 3 cut(s) 509, 642, 836
Bme18I GGWCC 2 cut(s) 382, 484
BmeT110I CYCGRG 1 cut(s) 804
BmgBI CACGTC 1 cut(s) 583
BmgT120I GGNCC 2 cut(s) 382, 484
BmrFI CCNGG 3 cut(s) 509, 642, 836
BmrI ACTGGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 624
BpuEI CTTGAG 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 641
BsaWI WCCGGW 2 cut(s) 559, 590
BsaXI ACNNNNNCTCC 4 cut(s) 211, 241, 366, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 641
Bse118I RCCGGY 1 cut(s) 590
Bse1I ACTGG 3 cut(s) 219, 291, 449
BseBI CCWGG 2 cut(s) 642, 836
BseDI CCNNGG 1 cut(s) 641
BseLI CCNNNNNNNGG 1 cut(s) 641
BseMII CTCAG 2 cut(s) 142, 213
BseNI ACTGG 3 cut(s) 219, 291, 449
BseXI GCAGC 1 cut(s) 190
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 1 cut(s) 738
BshTI ACCGGT 1 cut(s) 590
BsiHKAI GWGCWC 1 cut(s) 626
BsiHKCI CYCGRG 1 cut(s) 804
BsiSI CCGG 3 cut(s) 509, 560, 591
BslFI GGGAC 2 cut(s) 363, 593
BslI CCNNNNNNNGG 1 cut(s) 641
BsmFI GGGAC 2 cut(s) 363, 593
BsnI GGCC 1 cut(s) 738
BsoBI CYCGRG 1 cut(s) 804
Bsp1286I GDGCHC 1 cut(s) 626
Bsp143I GATC 2 cut(s) 222, 631
BspACI CCGC 3 cut(s) 83, 440, 759
BspANI GGCC 1 cut(s) 738
BspCNI CTCAG 2 cut(s) 141, 212
BspPI GGATC 1 cut(s) 626
BspQI GCTCTTC 1 cut(s) 614
BspTI CTTAAG 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 590
BsrI ACTGG 3 cut(s) 219, 291, 449
BssAI RCCGGY 1 cut(s) 590
BssECI CCNNGG 1 cut(s) 641
BssMI GATC 2 cut(s) 222, 631
Bst2UI CCWGG 2 cut(s) 642, 836
Bst4CI ACNGT 1 cut(s) 823
Bst6I CTCTTC 1 cut(s) 614
BstAFI CTTAAG 1 cut(s) 190
BstAPI GCANNNNNTGC 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 3 cut(s) 128, 199, 705
BstEII GGTNACC 1 cut(s) 586
BstENI CCTNNNNNAGG 1 cut(s) 639
BstKTI GATC 2 cut(s) 225, 634
BstMBI GATC 2 cut(s) 222, 631
BstMWI GCNNNNNNNGC 4 cut(s) 209, 367, 376, 405
BstNI CCWGG 2 cut(s) 642, 836
BstPI GGTNACC 1 cut(s) 586
BstSCI CCNGG 3 cut(s) 507, 640, 834
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 631
BstYI RGATCY 1 cut(s) 631
BsuRI GGCC 1 cut(s) 738
BtrI CACGTC 1 cut(s) 583
BtsIMutI CAGTG 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 144
Cfr10I RCCGGY 1 cut(s) 590
Cfr13I GGNCC 2 cut(s) 382, 484
Csp6I GTAC 3 cut(s) 7, 656, 819
CspAI ACCGGT 1 cut(s) 590
CviAII CATG 4 cut(s) 120, 163, 729, 755
CviQI GTAC 3 cut(s) 7, 656, 819
DdeI CTNAG 3 cut(s) 128, 199, 705
DpnI GATC 2 cut(s) 224, 633
DpnII GATC 2 cut(s) 222, 631
DraIII CACNNNGTG 1 cut(s) 338
Eam1104I CTCTTC 1 cut(s) 614
EarI CTCTTC 1 cut(s) 614
Eco47I GGWCC 2 cut(s) 382, 484
Eco57I CTGAAG 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 804
Eco91I GGTNACC 1 cut(s) 586
EcoNI CCTNNNNNAGG 1 cut(s) 639
EcoO65I GGTNACC 1 cut(s) 586
EcoRI GAATTC 1 cut(s) 424
EcoRII CCWGG 2 cut(s) 640, 834
FaeI CATG 4 cut(s) 123, 166, 732, 758
FaqI GGGAC 2 cut(s) 363, 593
FatI CATG 4 cut(s) 119, 162, 728, 754
FauI CCCGC 1 cut(s) 433
Fnu4HI GCNGC 1 cut(s) 204
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 1 cut(s) 717
GluI GCNGC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 624
HaeIII GGCC 1 cut(s) 738
HapII CCGG 3 cut(s) 509, 560, 591
Hin1II CATG 4 cut(s) 123, 166, 732, 758
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 5 cut(s) 195, 291, 341, 445, 467
HpaII CCGG 3 cut(s) 509, 560, 591
HphI GGTGA 2 cut(s) 350, 355
Hpy188I TCNGA 2 cut(s) 131, 231
Hpy188III TCNNGA 7 cut(s) 38, 220, 348, 432, 471, 804, 806
HpyAV CCTTC 1 cut(s) 398
HpyCH4III ACNGT 1 cut(s) 823
HpyCH4IV ACGT 2 cut(s) 5, 582
HpyCH4V TGCA 4 cut(s) 123, 142, 206, 212
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 367, 376, 405
HpyF3I CTNAG 3 cut(s) 128, 199, 705
HpySE526I ACGT 2 cut(s) 5, 582
Hsp92II CATG 4 cut(s) 123, 166, 732, 758
Kzo9I GATC 2 cut(s) 222, 631
LguI GCTCTTC 1 cut(s) 614
LmnI GCTCC 2 cut(s) 643, 701
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 129
MaeI CTAG 1 cut(s) 717
MaeII ACGT 2 cut(s) 5, 582
MaeIII GTNAC 3 cut(s) 217, 545, 586
MalI GATC 2 cut(s) 224, 633
MboI GATC 2 cut(s) 222, 631
MboII GAAGA 8 cut(s) 69, 166, 286, 336, 631, 641, 680, 819
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 1 cut(s) 626
MluCI AATT 5 cut(s) 56, 88, 102, 424, 435
MnlI CCTC 3 cut(s) 197, 395, 594
MseI TTAA 3 cut(s) 101, 191, 812
MspA1I CMGCKG 1 cut(s) 203
MspCI CTTAAG 1 cut(s) 190
MspI CCGG 3 cut(s) 509, 560, 591
MspR9I CCNGG 3 cut(s) 509, 642, 836
MunI CAATTG 1 cut(s) 56
MvaI CCWGG 2 cut(s) 642, 836
MwoI GCNNNNNNNGC 4 cut(s) 209, 367, 376, 405
NciI CCSGG 1 cut(s) 509
NdeII GATC 2 cut(s) 222, 631
NlaIII CATG 4 cut(s) 123, 166, 732, 758
NmuCI GTSAC 2 cut(s) 217, 545
PaeR7I CTCGAG 1 cut(s) 804
PciSI GCTCTTC 1 cut(s) 614
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PfeI GAWTC 5 cut(s) 195, 291, 341, 445, 467
PinAI ACCGGT 1 cut(s) 590
PkrI GCNGC 1 cut(s) 205
PshBI ATTAAT 1 cut(s) 101
Psp6I CCWGG 2 cut(s) 640, 834
PspEI GGTNACC 1 cut(s) 586
PspGI CCWGG 2 cut(s) 640, 834
PspPI GGNCC 2 cut(s) 382, 484
PsuI RGATCY 1 cut(s) 631
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 3 cut(s) 8, 657, 820
RsaNI GTAC 3 cut(s) 7, 656, 819
SapI GCTCTTC 1 cut(s) 614
SaqAI TTAA 3 cut(s) 101, 191, 812
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 222, 631
Sau96I GGNCC 2 cut(s) 382, 484
ScrFI CCNGG 3 cut(s) 509, 642, 836
SduI GDGCHC 1 cut(s) 626
SfaNI GCATC 1 cut(s) 129
Sfr274I CTCGAG 1 cut(s) 804
SinI GGWCC 2 cut(s) 382, 484
SlaI CTCGAG 1 cut(s) 804
SmlI CTYRAG 3 cut(s) 148, 190, 804
SmoI CTYRAG 3 cut(s) 148, 190, 804
Sse9I AATT 5 cut(s) 56, 88, 102, 424, 435
SsiI CCGC 3 cut(s) 83, 440, 759
SspMI CTAG 1 cut(s) 717
StyD4I CCNGG 3 cut(s) 507, 640, 834
TaaI ACNGT 1 cut(s) 823
TaiI ACGT 2 cut(s) 8, 585
TaqI TCGA 2 cut(s) 422, 805
TasI AATT 5 cut(s) 56, 88, 102, 424, 435
TfiI GAWTC 5 cut(s) 195, 291, 341, 445, 467
Tru1I TTAA 3 cut(s) 101, 191, 812
Tru9I TTAA 3 cut(s) 101, 191, 812
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 2 cut(s) 217, 545
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 2 cut(s) 217, 545
TspDTI ATGAA 6 cut(s) 151, 297, 417, 581, 710, 785
TspRI CASTG 1 cut(s) 219
Vha464I CTTAAG 1 cut(s) 190
VpaK11BI GGWCC 2 cut(s) 382, 484
VspI ATTAAT 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 639
XapI RAATTY 1 cut(s) 424
XhoI CTCGAG 1 cut(s) 804
XspI CTAG 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.