Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Reverse (-)

1279976 .. 1282348

Gene Structure 2373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0015200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCCTCTGTATGATTGTATGCTCCTGGCGAAGCCGCATGTAAAGAAGGAGGCTCTGTTGGACCTGGTTGCGAGAGTAAGCAAGCATGTTTTCCGACGAAATGGGGTTATTACTGACATGAAGTCCTTCGGCAATGTGCACTTGGGTTATGGTATTAAGAAGCTTGATGGCAGATTTTATCAGGGTCAACTGATGCAGATGACTATGATGGCTACACCTAACATGAACAAGGAGCTGCATTACCTCAACAAGGAAGATCGGTTGCTACGCTGGCTCTTGGTTAAACACCGAGACACAAAGTATGGCATGGAATTTCTTAGCGAACAGGATACCAGAAATGAAATTAATAAGTTTCATCGGGGCAGCATATATGATATGGTTGAAGATGATGACGACGACGACGACGATGACGATGATGAATATGATGTGGACCGGGAAGGAAATAATATGGCTGAAGACGATGACGACGATGATGATGAATATGATGTGGACCAGGAAGGAAAGCAGATTGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

172

Amino Acids

20.25

Weight (kDa)

4.49

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S6	PF01250	4 - 95	3.1e-15	Ribosomal protein S6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	1 cut(s)	383
AhdI	GACNNNNNGTC	1 cut(s)	121
AjnI	CCWGG	3 cut(s)	24, 63, 492
AluBI	AGCT	2 cut(s)	163, 235
AluI	AGCT	2 cut(s)	163, 235
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	285
Alw44I	GTGCAC	1 cut(s)	137
ApaLI	GTGCAC	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	235, 363
ApoI	RAATTY	1 cut(s)	311
AseI	ATTAAT	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	125
AspS9I	GGNCC	3 cut(s)	61, 430, 490
AsuC2I	CCSGG	1 cut(s)	434
AvaII	GGWCC	3 cut(s)	61, 430, 490
BaeGI	GKGCMC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	222, 375
BccI	CCATC	3 cut(s)	161, 202, 506
BciT130I	CCWGG	3 cut(s)	26, 65, 494
BciVI	GTATCC	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	285
BfuI	GTATCC	1 cut(s)	322
BisI	GCNGC	3 cut(s)	35, 236, 364
BlsI	GCNGC	3 cut(s)	36, 237, 365
Bme1390I	CCNGG	4 cut(s)	26, 65, 434, 494
Bme18I	GGWCC	3 cut(s)	61, 430, 490
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmgT120I	GGNCC	3 cut(s)	61, 430, 490
BmrFI	CCNGG	4 cut(s)	26, 65, 434, 494
BmsI	GCATC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	462
BpuMI	CCSGG	1 cut(s)	434
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	3 cut(s)	26, 65, 494
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	139
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	222, 375
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	139
BssMI	GATC	1 cut(s)	256
Bst2UI	CCWGG	3 cut(s)	26, 65, 494
BstC8I	GCNNGC	2 cut(s)	83, 272
BstDEI	CTNAG	1 cut(s)	317
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNI	CCWGG	3 cut(s)	26, 65, 494
BstNSI	RCATGY	2 cut(s)	41, 89
BstSCI	CCNGG	4 cut(s)	24, 63, 432, 492
BstSLI	GKGCMC	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	222, 375
BstV2I	GAAGAC	1 cut(s)	462
BsuI	GTATCC	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	83, 272
Cfr13I	GGNCC	3 cut(s)	61, 430, 490
CsiI	ACCWGGT	1 cut(s)	63
CviAII	CATG	5 cut(s)	38, 86, 118, 223, 307
CviJI	RGCY	7 cut(s)	34, 53, 163, 212, 235, 274, 452
CviKI_1	RGCY	7 cut(s)	34, 53, 163, 212, 235, 274, 452
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
DriI	GACNNNNNGTC	1 cut(s)	121
Eam1105I	GACNNNNNGTC	1 cut(s)	121
Eco47I	GGWCC	3 cut(s)	61, 430, 490
Eco57I	CTGAAG	1 cut(s)	474
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoRII	CCWGG	3 cut(s)	24, 63, 492
FaeI	CATG	5 cut(s)	41, 89, 121, 226, 310
FatI	CATG	5 cut(s)	37, 85, 117, 222, 306
Fnu4HI	GCNGC	3 cut(s)	35, 236, 364
Fsp4HI	GCNGC	3 cut(s)	35, 236, 364
GluI	GCNGC	3 cut(s)	35, 236, 364
HapII	CCGG	1 cut(s)	433
Hin1II	CATG	5 cut(s)	41, 89, 121, 226, 310
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HindIII	AAGCTT	1 cut(s)	161
HpaII	CCGG	1 cut(s)	433
Hpy166II	GTNNAC	4 cut(s)	139, 188, 430, 490
Hpy188I	TCNGA	1 cut(s)	95
Hpy8I	GTNNAC	4 cut(s)	139, 188, 430, 490
Hpy99I	CGWCG	6 cut(s)	99, 398, 401, 404, 407, 470
HpyAV	CCTTC	4 cut(s)	40, 136, 431, 491
HpyCH4V	TGCA	3 cut(s)	139, 196, 238
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	1 cut(s)	317
Hsp92II	CATG	5 cut(s)	41, 89, 121, 226, 310
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	27, 232
Lsp1109I	GCAGC	2 cut(s)	222, 375
LweI	GCATC	1 cut(s)	183
MabI	ACCWGGT	1 cut(s)	63
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	3 cut(s)	266, 395, 467
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	2 cut(s)	311, 342
MmeI	TCCRAC	2 cut(s)	39, 118
MnlI	CCTC	3 cut(s)	15, 43, 254
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	3 cut(s)	156, 282, 345
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	4 cut(s)	26, 65, 434, 494
MvaI	CCWGG	3 cut(s)	26, 65, 494
MwoI	GCNNNNNNNGC	1 cut(s)	271
NciI	CCSGG	1 cut(s)	434
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	5 cut(s)	41, 89, 121, 226, 310
NspI	RCATGY	2 cut(s)	41, 89
PcsI	WCGNNNNNNNCGW	4 cut(s)	399, 402, 408, 465
PdmI	GAANNNNTTC	1 cut(s)	125
PkrI	GCNGC	3 cut(s)	36, 237, 365
PshBI	ATTAAT	1 cut(s)	345
Psp6I	CCWGG	3 cut(s)	24, 63, 492
PspGI	CCWGG	3 cut(s)	24, 63, 492
PspPI	GGNCC	3 cut(s)	61, 430, 490
SaqAI	TTAA	3 cut(s)	156, 282, 345
SatI	GCNGC	3 cut(s)	35, 236, 364
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	3 cut(s)	61, 430, 490
ScrFI	CCNGG	4 cut(s)	26, 65, 434, 494
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	66, 165, 220, 237, 246
SexAI	ACCWGGT	1 cut(s)	63
SfaNI	GCATC	1 cut(s)	183
SinI	GGWCC	3 cut(s)	61, 430, 490
Sse9I	AATT	2 cut(s)	311, 342
SsiI	CCGC	1 cut(s)	35
StyD4I	CCNGG	4 cut(s)	24, 63, 432, 492
TasI	AATT	2 cut(s)	311, 342
TauI	GCSGC	1 cut(s)	37
Tru1I	TTAA	3 cut(s)	156, 282, 345
Tru9I	TTAA	3 cut(s)	156, 282, 345
TseI	GCWGC	2 cut(s)	235, 363
TspDTI	ATGAA	6 cut(s)	134, 239, 344, 354, 432, 492
VneI	GTGCAC	1 cut(s)	137
VpaK11BI	GGWCC	3 cut(s)	61, 430, 490
VspI	ATTAAT	1 cut(s)	345
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	2 cut(s)	41, 89
XmnI	GAANNNNTTC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.