Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Forward (+)

56917667 .. 56919939

Gene Structure 2273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019806

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGTCTGTACCACTGGAACATGACTACATAGGCTTAGCAGAGACTTCTTCAATGGAAAGAAGCTCTGATAGGATTTCCTCTTCCTCCTCCTCTGCCCACTCAACTACAGAGGATGTCAAGACCTCTGCTTTCAACCTCAAGGAGACTGAGCTGAGGCTTGGCTTGCCTGGCTCTCACTCACCTGAGAGAAAACCAGGAATTGCTCTTTCAATTTTTGGCAAAGATTTGGAGGACAATAAGCAAAATGGATATCCTCTTAACCCTTCAAAAACCAACCCTGTGTCTGGGGCTAAGAGGGGTTTCTCTGATGCCATTGATGGGCCTTCTGAGAAATGGGTTTTTCGTATGAGTAATGGATCTGAAGCTGATAAGGGAGCAGTCTTGTTCTCTCCTAAAGGTGAGAGCAATGCTAAAACACAACAGCTATGTGTGTCTGGACAAACCAAGAAAGAGGTTGCTGCTTCTGTTGTTCCTCAGTCACCAAAGCCAGTCCAAGAGAAGCAGAAGTCTCAGGTCTCTGAGCATGTTAGTCCTCCTGCTGCCAAGGCACAGGTGGTAGGATGGCCCCCAATTCGATCCTTTCGAAAGAACACCATGGCCTCTAATTTGGCAAAGAACAATGATGATGCTGAGGGAAAACAAGGTTCTAATGGATTTCCAGAGAAGGATGGCCTGAGTGAGAGTCGGTTGATGGATCTTCTCCACGGTTCTGAATACGTTCTTACTTTTGAAGACAAGGACGATGATTGGATGCTTGTTGGTGATGTTCCTTGGGGGATGTTCACTGAGACATGTAGGAAACTAAGGATCATGAAAGGTTCAGAAGCAATTGGACTTGCTCCAAGGGCTATGGAGAAGTGCAAGAACCGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

292

Amino Acids

31.66

Weight (kDa)

6.98

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	48 - 215	1.8e-21	AUX/IAA family
AUX_IAA	PF02309	212 - 282	2.5e-33	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	868
AclWI	GGATC	4 cut(s)	364, 570, 702, 815
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	284, 318
AflIII	ACRYGT	1 cut(s)	791
AgsI	TTSAA	5 cut(s)	51, 133, 210, 267, 731
AjnI	CCWGG	2 cut(s)	166, 193
AluBI	AGCT	4 cut(s)	63, 151, 365, 424
AluI	AGCT	4 cut(s)	63, 151, 365, 424
Alw26I	GTCTC	5 cut(s)	35, 137, 513, 520, 782
AlwI	GGATC	4 cut(s)	364, 570, 702, 815
AoxI	GGCC	4 cut(s)	320, 563, 597, 670
ApeKI	GCWGC	2 cut(s)	458, 539
Asp700I	GAANNNNTTC	1 cut(s)	717
AspS9I	GGNCC	2 cut(s)	320, 564
AsuHPI	GGTGA	4 cut(s)	171, 410, 471, 773
AsuII	TTCGAA	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	738
BbvCI	CCTCAGC	2 cut(s)	152, 630
BbvI	GCAGC	2 cut(s)	445, 526
BccI	CCATC	4 cut(s)	311, 555, 662, 685
BciT130I	CCWGG	2 cut(s)	168, 195
BcoDI	GTCTC	5 cut(s)	35, 137, 513, 520, 782
BfaI	CTAG	1 cut(s)	874
BfmI	CTRYAG	1 cut(s)	105
BisI	GCNGC	2 cut(s)	459, 540
BlpI	GCTNAGC	1 cut(s)	34
BlsI	GCNGC	2 cut(s)	460, 541
Bme1390I	CCNGG	2 cut(s)	168, 195
BmgT120I	GGNCC	2 cut(s)	320, 564
BmiI	GGNNCC	1 cut(s)	566
BmrFI	CCNGG	2 cut(s)	168, 195
BmsI	GCATC	3 cut(s)	298, 616, 741
BpiI	GAAGAC	1 cut(s)	738
Bpu10I	CCTNAGC	2 cut(s)	152, 630
Bpu1102I	GCTNAGC	1 cut(s)	34
Bpu14I	TTCGAA	1 cut(s)	583
BpuEI	CTTGAG	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	5 cut(s)	543, 594, 703, 770, 842
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 318
Bse1I	ACTGG	2 cut(s)	18, 488
Bse3DI	GCAATG	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	168, 195
BseDI	CCNNGG	5 cut(s)	543, 594, 703, 770, 842
BseGI	GGATG	5 cut(s)	118, 566, 673, 756, 783
BseLI	CCNNNNNNNGG	2 cut(s)	284, 318
BseMI	GCAATG	1 cut(s)	412
BseNI	ACTGG	2 cut(s)	18, 488
BseRI	GAGGAG	2 cut(s)	76, 79
BseXI	GCAGC	2 cut(s)	445, 526
BshFI	GGCC	4 cut(s)	322, 565, 599, 672
BslI	CCNNNNNNNGG	2 cut(s)	284, 318
BsmAI	GTCTC	5 cut(s)	35, 137, 513, 520, 782
BsnI	GGCC	4 cut(s)	322, 565, 599, 672
Bso31I	GGTCTC	1 cut(s)	520
Bsp119I	TTCGAA	1 cut(s)	583
Bsp143I	GATC	4 cut(s)	356, 575, 694, 807
Bsp1720I	GCTNAGC	1 cut(s)	34
Bsp19I	CCATGG	1 cut(s)	594
BspACI	CCGC	1 cut(s)	868
BspANI	GGCC	4 cut(s)	322, 565, 599, 672
BspHI	TCATGA	1 cut(s)	810
BspLI	GGNNCC	1 cut(s)	566
BspPI	GGATC	4 cut(s)	364, 570, 702, 815
BspT104I	TTCGAA	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	18, 488
BssECI	CCNNGG	5 cut(s)	543, 594, 703, 770, 842
BssMI	GATC	4 cut(s)	356, 575, 694, 807
BssT1I	CCWWGG	4 cut(s)	543, 594, 770, 842
Bst2UI	CCWGG	2 cut(s)	168, 195
Bst4CI	ACNGT	1 cut(s)	707
Bst6I	CTCTTC	1 cut(s)	85
BstBI	TTCGAA	1 cut(s)	583
BstC8I	GCNNGC	1 cut(s)	164
BstDSI	CCRYGG	2 cut(s)	594, 703
BstF5I	GGATG	5 cut(s)	118, 566, 673, 756, 783
BstKTI	GATC	4 cut(s)	359, 578, 697, 810
BstMAI	GTCTC	5 cut(s)	35, 137, 513, 520, 782
BstMBI	GATC	4 cut(s)	356, 575, 694, 807
BstMWI	GCNNNNNNNGC	5 cut(s)	163, 168, 545, 845, 867
BstNI	CCWGG	2 cut(s)	168, 195
BstNSI	RCATGY	2 cut(s)	527, 795
BstSCI	CCNGG	2 cut(s)	166, 193
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	445, 526
BstV2I	GAAGAC	1 cut(s)	738
BstX2I	RGATCY	2 cut(s)	356, 694
BstYI	RGATCY	2 cut(s)	356, 694
BsuRI	GGCC	4 cut(s)	322, 565, 599, 672
BtgI	CCRYGG	2 cut(s)	594, 703
BtsCI	GGATG	5 cut(s)	118, 566, 673, 756, 783
BtsIMutI	CAGTG	2 cut(s)	11, 783
Cac8I	GCNNGC	1 cut(s)	164
CciI	TCATGA	1 cut(s)	810
Cfr13I	GGNCC	2 cut(s)	320, 564
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	5 cut(s)	20, 524, 595, 792, 811
CviQI	GTAC	1 cut(s)	8
DpnI	GATC	4 cut(s)	358, 577, 696, 809
DpnII	GATC	4 cut(s)	356, 575, 694, 807
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco130I	CCWWGG	4 cut(s)	543, 594, 770, 842
Eco31I	GGTCTC	1 cut(s)	520
Eco32I	GATATC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	381
EcoRII	CCWGG	2 cut(s)	166, 193
EcoRV	GATATC	1 cut(s)	251
EcoT14I	CCWWGG	4 cut(s)	543, 594, 770, 842
ErhI	CCWWGG	4 cut(s)	543, 594, 770, 842
FaeI	CATG	5 cut(s)	23, 527, 598, 795, 814
FaiI	YATR	9 cut(s)	21, 29, 347, 427, 525, 596, 793, 812, 851
FatI	CATG	5 cut(s)	19, 523, 594, 791, 810
Fnu4HI	GCNGC	2 cut(s)	459, 540
FokI	GGATG	5 cut(s)	125, 573, 680, 763, 790
Fsp4HI	GCNGC	2 cut(s)	459, 540
FspBI	CTAG	1 cut(s)	874
GluI	GCNGC	2 cut(s)	459, 540
HaeIII	GGCC	4 cut(s)	322, 565, 599, 672
Hin1II	CATG	5 cut(s)	23, 527, 598, 795, 814
HinfI	GANTC	1 cut(s)	682
HphI	GGTGA	4 cut(s)	171, 410, 471, 773
Hpy166II	GTNNAC	1 cut(s)	783
Hpy188I	TCNGA	7 cut(s)	67, 307, 328, 361, 520, 712, 823
Hpy188III	TCNNGA	4 cut(s)	118, 435, 659, 811
Hpy8I	GTNNAC	1 cut(s)	783
HpyAV	CCTTC	3 cut(s)	273, 333, 658
HpyCH4III	ACNGT	1 cut(s)	707
HpyCH4IV	ACGT	1 cut(s)	717
HpyCH4V	TGCA	1 cut(s)	861
HpyF10VI	GCNNNNNNNGC	5 cut(s)	163, 168, 545, 845, 867
HpySE526I	ACGT	1 cut(s)	717
Hsp92II	CATG	5 cut(s)	23, 527, 598, 795, 814
Kzo9I	GATC	4 cut(s)	356, 575, 694, 807
LmnI	GCTCC	2 cut(s)	374, 844
Lsp1109I	GCAGC	2 cut(s)	445, 526
LweI	GCATC	3 cut(s)	298, 616, 741
MaeI	CTAG	1 cut(s)	874
MaeII	ACGT	1 cut(s)	717
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	4 cut(s)	358, 577, 696, 809
MboI	GATC	4 cut(s)	356, 575, 694, 807
MboII	GAAGA	4 cut(s)	39, 72, 689, 743
MfeI	CAATTG	1 cut(s)	828
MflI	RGATCY	2 cut(s)	356, 694
MluCI	AATT	5 cut(s)	198, 210, 570, 604, 828
MlyI	GAGTC	1 cut(s)	691
MroXI	GAANNNNTTC	1 cut(s)	717
MseI	TTAA	1 cut(s)	258
MspR9I	CCNGG	2 cut(s)	168, 195
MunI	CAATTG	1 cut(s)	828
MvaI	CCWGG	2 cut(s)	168, 195
MwoI	GCNNNNNNNGC	5 cut(s)	163, 168, 545, 845, 867
NcoI	CCATGG	1 cut(s)	594
NdeII	GATC	4 cut(s)	356, 575, 694, 807
NlaIII	CATG	5 cut(s)	23, 527, 598, 795, 814
NlaIV	GGNNCC	1 cut(s)	566
NmuCI	GTSAC	1 cut(s)	477
NspI	RCATGY	2 cut(s)	527, 795
NspV	TTCGAA	1 cut(s)	583
PagI	TCATGA	1 cut(s)	810
PciI	ACATGT	1 cut(s)	791
PcsI	WCGNNNNNNNCGW	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	717
PkrI	GCNGC	2 cut(s)	460, 541
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
PscI	ACATGT	1 cut(s)	791
Psp6I	CCWGG	2 cut(s)	166, 193
PspGI	CCWGG	2 cut(s)	166, 193
PspN4I	GGNNCC	1 cut(s)	566
PspPI	GGNCC	2 cut(s)	320, 564
PsuI	RGATCY	2 cut(s)	356, 694
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	459, 540
Sau3AI	GATC	4 cut(s)	356, 575, 694, 807
Sau96I	GGNCC	2 cut(s)	320, 564
SchI	GAGTC	1 cut(s)	691
ScrFI	CCNGG	2 cut(s)	168, 195
SfaNI	GCATC	3 cut(s)	298, 616, 741
SfcI	CTRYAG	1 cut(s)	105
SfuI	TTCGAA	1 cut(s)	583
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	5 cut(s)	198, 210, 570, 604, 828
SsiI	CCGC	1 cut(s)	868
SspMI	CTAG	1 cut(s)	874
StyD4I	CCNGG	2 cut(s)	166, 193
StyI	CCWWGG	4 cut(s)	543, 594, 770, 842
TaaI	ACNGT	1 cut(s)	707
TaiI	ACGT	1 cut(s)	720
TaqI	TCGA	2 cut(s)	574, 583
TasI	AATT	5 cut(s)	198, 210, 570, 604, 828
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	2 cut(s)	18, 790
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	2 cut(s)	458, 539
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	1 cut(s)	827
TspRI	CASTG	2 cut(s)	18, 790
XceI	RCATGY	2 cut(s)	527, 795
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.