Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Reverse (-)

28888160 .. 28891333

Gene Structure 3174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTCTGTACCACTGGAACATGACTACATAGGCTTAGCAGAGACTTCTTCAATGGAAAGAAGCTCTGATAGGATTTCCTCTTCCTCCTCCTCTGCCCACTCAACTACAGAGGATGTCAAGACCTCTGCTTTCAACCTCAAGGAGACTGAGCTGAGGCTTGGCTTGCCTGGCTCTCACTCTCCTGAGAGAAAACCAGGAATTGCTCTTTCAATTTTTGGCAAAGATTTGGAGGACAATAAGCAAAATGGATATCCTCTAAACCCTTCAAAAACCAACCCTGTGTCTGGGGCTAAGAGGGGTTTCTCTGATGCCATTGATGGGTCTTCTGAGAAATGGGTTTTTCGTATGAGTAATGGATCTGAAGCTGATAAAGGAGCAGTCTTGTTCTCTCCTAAAGGTGAGAGTAATGCTAAAACACAACAGCTATGTGTGTCTGGACAAACCAACAAAGAGGTTGCTGCTTCTGTTGTTCCTCAGTCACCAAAGCCAGTCCAAGAGAAGCAGAAGTCTCAGGTCTCTGAGCATGTTAGTCCTCCTGCTGCCAAGGCACAGGTGGTCGGATGGCCCCCAATTCGATCATTTCGAAAGAACACCATGGCCTCAAATTTGGCAAAGAACAATGATGATGCTGAGGGAAAACAAGGGTCTGGGTGTCTTTATGTGAAGGTTAGCATGGATGGTGCTCCATATCTAAGGAAGGTTGACCTTAAAATGTACAACAACTACATGGAACTCTCTATGGCTTTGGAGAAGATGTTCAGCTGCTTCACTATTGGGCAGTGCAGTTCTAATGGATATCCAGAGAAGGATGGCCTGAGTGAGAGTCGGTTGATGGATCTTCTCCACGGTTCTGAATATGTTCTTACTTTTGAAGACAAGGACGATGACTGGATGCTTGTTGGTGATGTTCCTTGGGGGATGTTCACTGAGACGTGTAGGAAACTAAGGATCATGAAAGGTTCAGAAGCAATTGGACTTGCAGCTCCAAGGGCTATGGAGAAGTGCAAGAACCGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

339

Amino Acids

37.07

Weight (kDa)

6.96

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	48 - 327	3.1e-89	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1012
AclWI	GGATC	3 cut(s)	364, 843, 956
AcsI	RAATTY	1 cut(s)	604
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	2 cut(s)	9, 716
AfiI	CCNNNNNNNGG	2 cut(s)	284, 318
AflIII	ACRYGT	1 cut(s)	932
AgsI	TTSAA	5 cut(s)	51, 133, 210, 267, 872
AjiI	CACGTC	1 cut(s)	933
AjnI	CCWGG	2 cut(s)	166, 193
AloI	GAACNNNNNNTCC	2 cut(s)	740, 772
AluBI	AGCT	6 cut(s)	63, 151, 365, 424, 762, 983
AluI	AGCT	6 cut(s)	63, 151, 365, 424, 762, 983
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	5 cut(s)	35, 137, 513, 520, 923
AlwI	GGATC	3 cut(s)	364, 843, 956
AoxI	GGCC	3 cut(s)	563, 597, 811
ApeKI	GCWGC	4 cut(s)	458, 539, 762, 980
ApoI	RAATTY	1 cut(s)	604
Asp700I	GAANNNNTTC	2 cut(s)	755, 858
AspS9I	GGNCC	1 cut(s)	564
AsuHPI	GGTGA	3 cut(s)	410, 471, 914
AsuII	TTCGAA	1 cut(s)	583
BbsI	GAAGAC	2 cut(s)	315, 879
Bbv12I	GWGCWC	1 cut(s)	685
BbvCI	CCTCAGC	2 cut(s)	152, 630
BbvI	GCAGC	4 cut(s)	445, 526, 749, 992
BccI	CCATC	5 cut(s)	311, 555, 671, 803, 826
BciT130I	CCWGG	2 cut(s)	168, 195
BcoDI	GTCTC	5 cut(s)	35, 137, 513, 520, 923
BfaI	CTAG	1 cut(s)	1018
BfmI	CTRYAG	1 cut(s)	105
BisI	GCNGC	4 cut(s)	459, 540, 763, 981
BlpI	GCTNAGC	1 cut(s)	34
BlsI	GCNGC	4 cut(s)	460, 541, 764, 982
Bme1390I	CCNGG	2 cut(s)	168, 195
BmgBI	CACGTC	1 cut(s)	933
BmgT120I	GGNCC	1 cut(s)	564
BmiI	GGNNCC	1 cut(s)	566
BmrFI	CCNGG	2 cut(s)	168, 195
BmsI	GCATC	3 cut(s)	298, 616, 882
BpiI	GAAGAC	2 cut(s)	315, 879
Bpu10I	CCTNAGC	2 cut(s)	152, 630
Bpu1102I	GCTNAGC	1 cut(s)	34
Bpu14I	TTCGAA	1 cut(s)	583
BpuEI	CTTGAG	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	5 cut(s)	543, 594, 844, 911, 986
BsaXI	ACNNNNNCTCC	2 cut(s)	740, 770
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 318
Bse1I	ACTGG	3 cut(s)	18, 488, 893
BseBI	CCWGG	2 cut(s)	168, 195
BseDI	CCNNGG	5 cut(s)	543, 594, 844, 911, 986
BseGI	GGATG	6 cut(s)	118, 566, 682, 814, 897, 924
BseLI	CCNNNNNNNGG	2 cut(s)	284, 318
BseNI	ACTGG	3 cut(s)	18, 488, 893
BseRI	GAGGAG	2 cut(s)	76, 79
BseXI	GCAGC	4 cut(s)	445, 526, 749, 992
BsgI	GTGCAG	1 cut(s)	802
BshFI	GGCC	3 cut(s)	565, 599, 813
BsiHKAI	GWGCWC	1 cut(s)	685
BslI	CCNNNNNNNGG	2 cut(s)	284, 318
BsmAI	GTCTC	5 cut(s)	35, 137, 513, 520, 923
BsmBI	CGTCTC	1 cut(s)	923
BsnI	GGCC	3 cut(s)	565, 599, 813
Bso31I	GGTCTC	1 cut(s)	520
Bsp119I	TTCGAA	1 cut(s)	583
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	4 cut(s)	356, 575, 835, 948
Bsp1720I	GCTNAGC	1 cut(s)	34
Bsp19I	CCATGG	1 cut(s)	594
BspACI	CCGC	1 cut(s)	1012
BspANI	GGCC	3 cut(s)	565, 599, 813
BspHI	TCATGA	1 cut(s)	951
BspLI	GGNNCC	1 cut(s)	566
BspPI	GGATC	3 cut(s)	364, 843, 956
BspT104I	TTCGAA	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	520
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	3 cut(s)	18, 488, 893
BssECI	CCNNGG	5 cut(s)	543, 594, 844, 911, 986
BssMI	GATC	4 cut(s)	356, 575, 835, 948
BssT1I	CCWWGG	4 cut(s)	543, 594, 911, 986
Bst2UI	CCWGG	2 cut(s)	168, 195
Bst4CI	ACNGT	1 cut(s)	848
Bst6I	CTCTTC	1 cut(s)	85
BstAUI	TGTACA	1 cut(s)	714
BstBI	TTCGAA	1 cut(s)	583
BstC8I	GCNNGC	1 cut(s)	164
BstDSI	CCRYGG	2 cut(s)	594, 844
BstF5I	GGATG	6 cut(s)	118, 566, 682, 814, 897, 924
BstKTI	GATC	4 cut(s)	359, 578, 838, 951
BstMAI	GTCTC	5 cut(s)	35, 137, 513, 520, 923
BstMBI	GATC	4 cut(s)	356, 575, 835, 948
BstMWI	GCNNNNNNNGC	5 cut(s)	163, 168, 545, 989, 1011
BstNI	CCWGG	2 cut(s)	168, 195
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	166, 193
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	4 cut(s)	445, 526, 749, 992
BstV2I	GAAGAC	2 cut(s)	315, 879
BstX2I	RGATCY	2 cut(s)	356, 835
BstYI	RGATCY	2 cut(s)	356, 835
BsuRI	GGCC	3 cut(s)	565, 599, 813
BtgI	CCRYGG	2 cut(s)	594, 844
BtrI	CACGTC	1 cut(s)	933
BtsCI	GGATG	6 cut(s)	118, 566, 682, 814, 897, 924
BtsI	GCAGTG	1 cut(s)	785
BtsIMutI	CAGTG	3 cut(s)	11, 785, 924
Cac8I	GCNNGC	1 cut(s)	164
CciI	TCATGA	1 cut(s)	951
Cfr13I	GGNCC	1 cut(s)	564
Csp6I	GTAC	2 cut(s)	8, 715
CviAII	CATG	6 cut(s)	20, 524, 595, 673, 727, 952
CviQI	GTAC	2 cut(s)	8, 715
DpnI	GATC	4 cut(s)	358, 577, 837, 950
DpnII	GATC	4 cut(s)	356, 575, 835, 948
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco130I	CCWWGG	4 cut(s)	543, 594, 911, 986
Eco31I	GGTCTC	1 cut(s)	520
Eco32I	GATATC	2 cut(s)	251, 797
Eco57I	CTGAAG	1 cut(s)	381
EcoRII	CCWGG	2 cut(s)	166, 193
EcoRV	GATATC	2 cut(s)	251, 797
EcoT14I	CCWWGG	4 cut(s)	543, 594, 911, 986
ErhI	CCWWGG	4 cut(s)	543, 594, 911, 986
Esp3I	CGTCTC	1 cut(s)	923
FaeI	CATG	6 cut(s)	23, 527, 598, 676, 730, 955
FatI	CATG	6 cut(s)	19, 523, 594, 672, 726, 951
Fnu4HI	GCNGC	4 cut(s)	459, 540, 763, 981
FokI	GGATG	6 cut(s)	125, 573, 689, 821, 904, 931
Fsp4HI	GCNGC	4 cut(s)	459, 540, 763, 981
FspBI	CTAG	1 cut(s)	1018
GluI	GCNGC	4 cut(s)	459, 540, 763, 981
HaeIII	GGCC	3 cut(s)	565, 599, 813
Hin1II	CATG	6 cut(s)	23, 527, 598, 676, 730, 955
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HinfI	GANTC	1 cut(s)	823
HphI	GGTGA	3 cut(s)	410, 471, 914
Hpy166II	GTNNAC	2 cut(s)	703, 924
Hpy188I	TCNGA	8 cut(s)	67, 307, 328, 361, 520, 560, 853, 964
Hpy188III	TCNNGA	5 cut(s)	118, 182, 435, 800, 952
Hpy8I	GTNNAC	2 cut(s)	703, 924
HpyAV	CCTTC	4 cut(s)	273, 658, 691, 799
HpyCH4III	ACNGT	1 cut(s)	848
HpyCH4IV	ACGT	1 cut(s)	932
HpyCH4V	TGCA	3 cut(s)	783, 980, 1005
HpyF10VI	GCNNNNNNNGC	5 cut(s)	163, 168, 545, 989, 1011
HpySE526I	ACGT	1 cut(s)	932
Hsp92II	CATG	6 cut(s)	23, 527, 598, 676, 730, 955
Kzo9I	GATC	4 cut(s)	356, 575, 835, 948
LmnI	GCTCC	3 cut(s)	374, 688, 988
Lsp1109I	GCAGC	4 cut(s)	445, 526, 749, 992
LweI	GCATC	3 cut(s)	298, 616, 882
MaeI	CTAG	1 cut(s)	1018
MaeII	ACGT	1 cut(s)	932
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	4 cut(s)	358, 577, 837, 950
MboI	GATC	4 cut(s)	356, 575, 835, 948
MboII	GAAGA	6 cut(s)	39, 72, 315, 763, 830, 884
MfeI	CAATTG	1 cut(s)	969
MflI	RGATCY	2 cut(s)	356, 835
MhlI	GDGCHC	1 cut(s)	685
MluCI	AATT	5 cut(s)	198, 210, 570, 604, 969
MlyI	GAGTC	1 cut(s)	832
MmeI	TCCRAC	1 cut(s)	538
MroXI	GAANNNNTTC	2 cut(s)	755, 858
MseI	TTAA	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	762
MspR9I	CCNGG	2 cut(s)	168, 195
MunI	CAATTG	1 cut(s)	969
MvaI	CCWGG	2 cut(s)	168, 195
MwoI	GCNNNNNNNGC	5 cut(s)	163, 168, 545, 989, 1011
NcoI	CCATGG	1 cut(s)	594
NdeII	GATC	4 cut(s)	356, 575, 835, 948
NlaIII	CATG	6 cut(s)	23, 527, 598, 676, 730, 955
NlaIV	GGNNCC	1 cut(s)	566
NmuCI	GTSAC	1 cut(s)	477
NspI	RCATGY	1 cut(s)	527
NspV	TTCGAA	1 cut(s)	583
PagI	TCATGA	1 cut(s)	951
PcsI	WCGNNNNNNNCGW	1 cut(s)	580
PdmI	GAANNNNTTC	2 cut(s)	755, 858
PkrI	GCNGC	4 cut(s)	460, 541, 764, 982
PleI	GAGTC	1 cut(s)	831
PpsI	GAGTC	1 cut(s)	831
Psp6I	CCWGG	2 cut(s)	166, 193
PspGI	CCWGG	2 cut(s)	166, 193
PspN4I	GGNNCC	1 cut(s)	566
PspPI	GGNCC	1 cut(s)	564
PsuI	RGATCY	2 cut(s)	356, 835
PvuII	CAGCTG	1 cut(s)	762
RsaI	GTAC	2 cut(s)	9, 716
RsaNI	GTAC	2 cut(s)	8, 715
SaqAI	TTAA	1 cut(s)	708
SatI	GCNGC	4 cut(s)	459, 540, 763, 981
Sau3AI	GATC	4 cut(s)	356, 575, 835, 948
Sau96I	GGNCC	1 cut(s)	564
SchI	GAGTC	1 cut(s)	832
ScrFI	CCNGG	2 cut(s)	168, 195
SduI	GDGCHC	1 cut(s)	685
SfaNI	GCATC	3 cut(s)	298, 616, 882
SfcI	CTRYAG	1 cut(s)	105
SfuI	TTCGAA	1 cut(s)	583
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	5 cut(s)	198, 210, 570, 604, 969
SsiI	CCGC	1 cut(s)	1012
SspMI	CTAG	1 cut(s)	1018
StyD4I	CCNGG	2 cut(s)	166, 193
StyI	CCWWGG	4 cut(s)	543, 594, 911, 986
TaaI	ACNGT	1 cut(s)	848
TaiI	ACGT	1 cut(s)	935
TaqI	TCGA	2 cut(s)	574, 583
TasI	AATT	5 cut(s)	198, 210, 570, 604, 969
TatI	WGTACW	1 cut(s)	714
Tru1I	TTAA	1 cut(s)	708
Tru9I	TTAA	1 cut(s)	708
TscAI	CASTG	3 cut(s)	18, 785, 931
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	4 cut(s)	458, 539, 762, 980
Tsp45I	GTSAC	1 cut(s)	477
TspDTI	ATGAA	1 cut(s)	968
TspRI	CASTG	3 cut(s)	18, 785, 931
XapI	RAATTY	1 cut(s)	604
XceI	RCATGY	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XmnI	GAANNNNTTC	2 cut(s)	755, 858
XspI	CTAG	1 cut(s)	1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.