Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Reverse (-)

87709908 .. 87713838

Gene Structure 3931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00150310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTCTATGTCCTTGGAGCATGATTACATAGGCTTATCTGAGTCTGTTCCTTCAATGGAAGCCTCTGACAGGTCTAACAAGGGAGCTGCTTTGAACCTCAAAGCCACTGAGCTCAGGCTGGGCTTGCCTGGGTCTGAGTCCCCAGAGAGAGATAATGGTGGTGTGGAGGACAAAACTGGGTTTTCACTGCCTGTGCCTAAACCCTCTGTGTCTGGAGCCAAGAGGGTGTTCTCTGACGCCATTGATGGAGCTTCTGGGAAGTGGGTTTTCTCTGGGAGTGGTGGATCTGAGGCTGATTTGGGTAAAGGTGGTAACTTGGTTTCTCCTAGAGGTGTTAATGGTGGAAAAGGTCTTGCTGGGCCTGAGTGTAAAAGTCAACCAATCTCTGCTGTGAAAGATGGGGTACAACAGTCCCCAAACCCTTTGCATGAGAAGAAGCCTCAGGTTTCTGCTCCTGCAGCAAAGGCACAGGTTGTTGGATGGCCACCAATTCGTTCATTCCGGAAGAATTCAATGGCATCCATTCCTCCCAAAAAGGATGATGATGCAGAAGGCAAGATCGGAGCAGGATGTCTTTATATCAAGGTCAGCATGGATGGTGCACCATACCTGAGGAAAGTCGATCTCAAAACCTATTGTAGCTATGTGGATCTATCATTAGCACTGGAGAAGATGTTCAGCTGCTTTACAATTGGTCAATGTGGCCCATATGGAGTTTCAAGTCAAGATGGAATGAGCGAGAGTCGTTTAATGGATCTCCTCCATGGTGCTGAATACGTCCTCACTTATGAAGACAAGGATGGTGACTGGATGTTAGTTGGTGACGTTCCCTGGCAGATGTTCACTGACTCCTGTAGAAGGATGAGGATTATGAAGAGTTCAGAAGCTATAGGGCTAGCCCCAAGAGCCATGCAGAAGTGCAAAAATAGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

311

Amino Acids

33.16

Weight (kDa)

7.52

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	35 - 302	1.6e-87	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	501
AclWI	GGATC	3 cut(s)	292, 657, 762
AcoI	YGGCCR	1 cut(s)	482
AcsI	RAATTY	1 cut(s)	508
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	2 cut(s)	69, 858
AgsI	TTSAA	4 cut(s)	54, 94, 513, 720
AjnI	CCWGG	2 cut(s)	127, 830
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AloI	GAACNNNNNNTCC	2 cut(s)	659, 691
AluBI	AGCT	6 cut(s)	86, 112, 251, 642, 681, 887
AluI	AGCT	6 cut(s)	86, 112, 251, 642, 681, 887
Alw21I	GWGCWC	2 cut(s)	114, 604
Alw44I	GTGCAC	1 cut(s)	600
AlwI	GGATC	3 cut(s)	292, 657, 762
Aor13HI	TCCGGA	1 cut(s)	501
AoxI	GGCC	3 cut(s)	359, 482, 703
ApaLI	GTGCAC	1 cut(s)	600
ApeKI	GCWGC	3 cut(s)	86, 458, 681
ApoI	RAATTY	1 cut(s)	508
Asp700I	GAANNNNTTC	1 cut(s)	674
AspS9I	GGNCC	2 cut(s)	359, 704
AsuHPI	GGTGA	2 cut(s)	815, 833
AsuNHI	GCTAGC	1 cut(s)	895
AxyI	CCTNAGG	2 cut(s)	441, 611
BaeGI	GKGCMC	1 cut(s)	604
BaeI	ACNNNNGTAYC	2 cut(s)	395, 428
BalI	TGGCCA	1 cut(s)	484
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	798
Bbv12I	GWGCWC	2 cut(s)	114, 604
BbvI	GCAGC	3 cut(s)	73, 470, 668
BccI	CCATC	6 cut(s)	239, 392, 474, 590, 722, 794
BciT130I	CCWGG	2 cut(s)	129, 832
BfaI	CTAG	2 cut(s)	327, 896
BfmI	CTRYAG	3 cut(s)	456, 853, 888
BisI	GCNGC	3 cut(s)	87, 459, 682
BlsI	GCNGC	3 cut(s)	88, 460, 683
Bme1390I	CCNGG	2 cut(s)	129, 832
BmgT120I	GGNCC	2 cut(s)	359, 704
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	2 cut(s)	129, 832
BmrI	ACTGGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	527, 535
BmtI	GCTAGC	1 cut(s)	899
BmuI	ACTGGG	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	798
BpmI	CTGGAG	2 cut(s)	234, 686
Bpu10I	CCTNAGC	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	4 cut(s)	12, 128, 763, 830
BsaWI	WCCGGW	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 858
Bse1I	ACTGG	3 cut(s)	181, 669, 812
Bse21I	CCTNAGG	2 cut(s)	441, 611
BseAI	TCCGGA	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	129, 832
BseDI	CCNNGG	4 cut(s)	12, 128, 763, 830
BseGI	GGATG	8 cut(s)	485, 518, 544, 575, 601, 805, 816, 867
BseLI	CCNNNNNNNGG	2 cut(s)	69, 858
BseMII	CTCAG	8 cut(s)	30, 99, 126, 127, 279, 354, 455, 602
BseNI	ACTGG	3 cut(s)	181, 669, 812
BseRI	GAGGAG	1 cut(s)	749
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	3 cut(s)	73, 470, 668
BseYI	CCCAGC	2 cut(s)	118, 356
BshFI	GGCC	3 cut(s)	361, 484, 705
BsiHKAI	GWGCWC	2 cut(s)	114, 604
BsiSI	CCGG	1 cut(s)	502
BslFI	GGGAC	2 cut(s)	124, 397
BslI	CCNNNNNNNGG	2 cut(s)	69, 858
BsmFI	GGGAC	2 cut(s)	124, 397
BsnI	GGCC	3 cut(s)	361, 484, 705
Bsp1286I	GDGCHC	2 cut(s)	114, 604
Bsp13I	TCCGGA	1 cut(s)	501
Bsp143I	GATC	5 cut(s)	284, 558, 622, 649, 754
Bsp19I	CCATGG	1 cut(s)	763
BspANI	GGCC	3 cut(s)	361, 484, 705
BspCNI	CTCAG	8 cut(s)	31, 100, 126, 127, 280, 355, 454, 603
BspEI	TCCGGA	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	460
BspOI	GCTAGC	1 cut(s)	899
BspPI	GGATC	3 cut(s)	292, 657, 762
BsrI	ACTGG	3 cut(s)	181, 669, 812
BssECI	CCNNGG	4 cut(s)	12, 128, 763, 830
BssMI	GATC	5 cut(s)	284, 558, 622, 649, 754
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	2 cut(s)	12, 763
Bst2UI	CCWGG	2 cut(s)	129, 832
Bst4CI	ACNGT	1 cut(s)	411
Bst6I	CTCTTC	1 cut(s)	869
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	125, 897
BstDEI	CTNAG	8 cut(s)	39, 108, 113, 135, 288, 363, 441, 611
BstDSI	CCRYGG	1 cut(s)	763
BstENI	CCTNNNNNAGG	2 cut(s)	67, 856
BstF5I	GGATG	8 cut(s)	485, 518, 544, 575, 601, 805, 816, 867
BstKTI	GATC	5 cut(s)	287, 561, 625, 652, 757
BstMBI	GATC	5 cut(s)	284, 558, 622, 649, 754
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 458, 464, 905
BstNI	CCWGG	2 cut(s)	129, 832
BstSCI	CCNGG	2 cut(s)	127, 830
BstSFI	CTRYAG	3 cut(s)	456, 853, 888
BstSLI	GKGCMC	1 cut(s)	604
BstV1I	GCAGC	3 cut(s)	73, 470, 668
BstV2I	GAAGAC	1 cut(s)	798
BstX2I	RGATCY	3 cut(s)	284, 649, 754
BstYI	RGATCY	3 cut(s)	284, 649, 754
Bsu36I	CCTNAGG	2 cut(s)	441, 611
BsuRI	GGCC	3 cut(s)	361, 484, 705
BtgI	CCRYGG	1 cut(s)	763
BtsCI	GGATG	8 cut(s)	485, 518, 544, 575, 601, 805, 816, 867
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	4 cut(s)	105, 185, 662, 843
Cac8I	GCNNGC	2 cut(s)	125, 897
Cfr13I	GGNCC	2 cut(s)	359, 704
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	5 cut(s)	20, 428, 592, 764, 910
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	8 cut(s)	39, 108, 113, 135, 288, 363, 441, 611
DpnI	GATC	5 cut(s)	286, 560, 624, 651, 756
DpnII	GATC	5 cut(s)	284, 558, 622, 649, 754
EaeI	YGGCCR	1 cut(s)	482
Eam1104I	CTCTTC	1 cut(s)	869
EarI	CTCTTC	1 cut(s)	869
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	2 cut(s)	12, 763
Eco24I	GRGCYC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	112
Eco81I	CCTNAGG	2 cut(s)	441, 611
EcoICRI	GAGCTC	1 cut(s)	112
EcoNI	CCTNNNNNAGG	2 cut(s)	67, 856
EcoRI	GAATTC	1 cut(s)	508
EcoRII	CCWGG	2 cut(s)	127, 830
EcoT14I	CCWWGG	2 cut(s)	12, 763
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	2 cut(s)	12, 763
FaeI	CATG	5 cut(s)	23, 431, 595, 767, 913
FaqI	GGGAC	2 cut(s)	124, 397
FatI	CATG	5 cut(s)	19, 427, 591, 763, 909
FauNDI	CATATG	1 cut(s)	709
Fnu4HI	GCNGC	3 cut(s)	87, 459, 682
FokI	GGATG	8 cut(s)	492, 505, 551, 582, 608, 812, 823, 874
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	3 cut(s)	87, 459, 682
FspBI	CTAG	2 cut(s)	327, 896
GluI	GCNGC	3 cut(s)	87, 459, 682
GsaI	CCCAGC	2 cut(s)	122, 360
GsuI	CTGGAG	2 cut(s)	234, 686
HaeIII	GGCC	3 cut(s)	361, 484, 705
HapII	CCGG	1 cut(s)	502
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	5 cut(s)	23, 431, 595, 767, 913
HincII	GTYRAC	1 cut(s)	377
HindII	GTYRAC	1 cut(s)	377
HinfI	GANTC	4 cut(s)	41, 137, 742, 848
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	2 cut(s)	815, 833
Hpy166II	GTNNAC	3 cut(s)	377, 602, 843
Hpy188I	TCNGA	7 cut(s)	40, 67, 136, 235, 289, 563, 883
Hpy188III	TCNNGA	3 cut(s)	213, 502, 725
Hpy8I	GTNNAC	3 cut(s)	377, 602, 843
HpyAV	CCTTC	3 cut(s)	60, 545, 852
HpyCH4III	ACNGT	1 cut(s)	411
HpyCH4IV	ACGT	2 cut(s)	777, 825
HpyCH4V	TGCA	6 cut(s)	427, 458, 548, 602, 913, 921
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 458, 464, 905
HpyF3I	CTNAG	8 cut(s)	39, 108, 113, 135, 288, 363, 441, 611
HpySE526I	ACGT	2 cut(s)	777, 825
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	5 cut(s)	23, 431, 595, 767, 913
Kpn2I	TCCGGA	1 cut(s)	501
Kzo9I	GATC	5 cut(s)	284, 558, 622, 649, 754
LmnI	GCTCC	6 cut(s)	16, 83, 215, 248, 457, 563
Lsp1109I	GCAGC	3 cut(s)	73, 470, 668
LweI	GCATC	2 cut(s)	527, 535
MaeI	CTAG	2 cut(s)	327, 896
MaeII	ACGT	2 cut(s)	777, 825
MaeIII	GTNAC	3 cut(s)	311, 803, 821
MalI	GATC	5 cut(s)	286, 560, 624, 651, 756
MboI	GATC	5 cut(s)	284, 558, 622, 649, 754
MboII	GAAGA	5 cut(s)	445, 517, 682, 803, 886
MfeI	CAATTG	1 cut(s)	690
MflI	RGATCY	3 cut(s)	284, 649, 754
MhlI	GDGCHC	2 cut(s)	114, 604
MlsI	TGGCCA	1 cut(s)	484
MluCI	AATT	4 cut(s)	489, 508, 690, 931
MluNI	TGGCCA	1 cut(s)	484
MlyI	GAGTC	4 cut(s)	50, 146, 751, 842
MmeI	TCCRAC	1 cut(s)	457
Mox20I	TGGCCA	1 cut(s)	484
MroI	TCCGGA	1 cut(s)	501
MroXI	GAANNNNTTC	1 cut(s)	674
MscI	TGGCCA	1 cut(s)	484
MseI	TTAA	2 cut(s)	336, 749
Msp20I	TGGCCA	1 cut(s)	484
MspA1I	CMGCKG	1 cut(s)	681
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	2 cut(s)	129, 832
MunI	CAATTG	1 cut(s)	690
MvaI	CCWGG	2 cut(s)	129, 832
MwoI	GCNNNNNNNGC	4 cut(s)	124, 458, 464, 905
NcoI	CCATGG	1 cut(s)	763
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	5 cut(s)	284, 558, 622, 649, 754
NheI	GCTAGC	1 cut(s)	895
NlaIII	CATG	5 cut(s)	23, 431, 595, 767, 913
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	803, 821
PdmI	GAANNNNTTC	1 cut(s)	674
PkrI	GCNGC	3 cut(s)	88, 460, 683
PleI	GAGTC	4 cut(s)	49, 145, 750, 842
PpsI	GAGTC	4 cut(s)	49, 145, 750, 842
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	127, 830
PspFI	CCCAGC	2 cut(s)	118, 356
PspGI	CCWGG	2 cut(s)	127, 830
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	2 cut(s)	359, 704
PstI	CTGCAG	1 cut(s)	460
PsuI	RGATCY	3 cut(s)	284, 649, 754
PvuII	CAGCTG	1 cut(s)	681
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	336, 749
SatI	GCNGC	3 cut(s)	87, 459, 682
Sau3AI	GATC	5 cut(s)	284, 558, 622, 649, 754
Sau96I	GGNCC	2 cut(s)	359, 704
SchI	GAGTC	4 cut(s)	50, 146, 751, 842
ScrFI	CCNGG	2 cut(s)	129, 832
SduI	GDGCHC	2 cut(s)	114, 604
SfaNI	GCATC	2 cut(s)	527, 535
SfcI	CTRYAG	3 cut(s)	456, 853, 888
Sse9I	AATT	4 cut(s)	489, 508, 690, 931
SspMI	CTAG	2 cut(s)	327, 896
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	127, 830
StyI	CCWWGG	2 cut(s)	12, 763
TaaI	ACNGT	1 cut(s)	411
TaiI	ACGT	2 cut(s)	780, 828
TaqI	TCGA	1 cut(s)	621
TasI	AATT	4 cut(s)	489, 508, 690, 931
Tru1I	TTAA	2 cut(s)	336, 749
Tru9I	TTAA	2 cut(s)	336, 749
TscAI	CASTG	4 cut(s)	112, 192, 669, 850
TseFI	GTSAC	2 cut(s)	803, 821
TseI	GCWGC	3 cut(s)	86, 458, 681
Tsp45I	GTSAC	2 cut(s)	803, 821
TspDTI	ATGAA	3 cut(s)	486, 804, 887
TspRI	CASTG	4 cut(s)	112, 192, 669, 850
VneI	GTGCAC	1 cut(s)	600
XagI	CCTNNNNNAGG	2 cut(s)	67, 856
XapI	RAATTY	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	674
XspI	CTAG	2 cut(s)	327, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.