Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Forward (+)

4631406 .. 4634380

Gene Structure 2975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1057200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTCTATATCTTTGGAGCATGATTATATAGGCTTATCTCCTTCAATGGAAACCTCTACCAAGTCTGCTGCTTTGAACCTCAAAGCCACTGAGCTGAGGCTGGGTTTGCCTGGCTCTCAGTCTCCAGAGAGAGACGGCTGCGGCGGCGGCGGTAGTGGGGTGGAGGAGAAGGCTACTGGGTTTTCAGTCTGTGGGGTTAAGGGGTTGGTGTCTGGGGCCAAGAGGGGCTTCTCAGACGCCATTGATGGAGCTTCTGGGAAGTGGGTTTTCTCTGGGAGTGGTGGATCTGAGGTGGAGTTAGGCAAAGGTGGGAACTTGCTCTCTCCCAGAGGTGTGAATGCTGGGAAAGCTCTTGCTGCTGGGTGTGAACCCAGCAATCAACCAACAGGTTTAGCTGGCTCTGCTGTGAAAGATGGTGTCCAACAATCTCCAAAGCCATTGCATGAGAAGAAATCCCAAGGGTCTGCTGGGTCTACTGCCCCTGCTGCAAAGGCACAGGTTGTAGGATGGCCACCAATTCGTTCTTTTAGGAAGAATTCAATGGCTTCCGTTCCTTCAAAAAATGGTGATGATGCAGAAGGCAAGATGGGAGCAGGGTGTCTGTATGTTAAGGTCAGCATGGATGGTGCACCGTACCTGAGGAAAGTTGATCTCAAAACCTATGGCAGCTATCTGGATTTATCTCTAGCTCTGGAAAAGATGTTCAGCTGCTTCACAATTGGTCAATGTGGTTCACATGGAGCTTCAAGGGATGGATTGAGCGAGAGTCGATTGATGGACCTCCTACATGGTGCTGAATATGTCCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCCTGGGAAATGTTCACCGACTCGTGTAAGAGGATGAGGATCATGAAGAGTTCAGAGGCTATCGGTCTAGCCCCAAGGGCCATGCAGAAGTGCAAAAATAGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

320

Amino Acids

33.22

Weight (kDa)

8.33

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	29 - 310	1.9e-88	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	473
AciI	CCGC	4 cut(s)	141, 144, 147, 150
AclWI	GGATC	2 cut(s)	292, 899
AcoI	YGGCCR	1 cut(s)	509
AcsI	RAATTY	1 cut(s)	535
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	635
AgsI	TTSAA	5 cut(s)	45, 76, 540, 558, 747
AjnI	CCWGG	2 cut(s)	109, 854
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AloI	GAACNNNNNNTCC	2 cut(s)	686, 718
AluBI	AGCT	8 cut(s)	94, 251, 350, 395, 669, 689, 708, 743
AluI	AGCT	8 cut(s)	94, 251, 350, 395, 669, 689, 708, 743
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	2 cut(s)	126, 126
Alw44I	GTGCAC	1 cut(s)	627
AlwI	GGATC	2 cut(s)	292, 899
AoxI	GGCC	3 cut(s)	216, 509, 930
ApaLI	GTGCAC	1 cut(s)	627
ApeKI	GCWGC	6 cut(s)	68, 138, 356, 485, 666, 708
ApoI	RAATTY	1 cut(s)	535
AspS9I	GGNCC	3 cut(s)	216, 778, 930
AsuHPI	GGTGA	5 cut(s)	578, 799, 839, 857, 859
AvaII	GGWCC	1 cut(s)	778
AxyI	CCTNAGG	1 cut(s)	638
BaeGI	GKGCMC	1 cut(s)	631
BalI	TGGCCA	1 cut(s)	511
BauI	CACGAG	1 cut(s)	874
BbsI	GAAGAC	1 cut(s)	822
Bbv12I	GWGCWC	1 cut(s)	631
BbvCI	CCTCAGC	1 cut(s)	95
BbvI	GCAGC	6 cut(s)	55, 125, 343, 472, 678, 695
BccI	CCATC	8 cut(s)	239, 407, 501, 580, 617, 746, 769, 818
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	111, 856
BcoDI	GTCTC	2 cut(s)	126, 126
BfaI	CTAG	3 cut(s)	686, 839, 920
BglI	GCCNNNNNGGC	1 cut(s)	929
BisI	GCNGC	9 cut(s)	69, 139, 142, 145, 148, 357, 486, 667, 709
BlsI	GCNGC	9 cut(s)	70, 140, 143, 146, 149, 358, 487, 668, 710
Bme1390I	CCNGG	2 cut(s)	111, 856
Bme18I	GGWCC	1 cut(s)	778
BmgT120I	GGNCC	3 cut(s)	216, 778, 930
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	2 cut(s)	111, 856
BmrI	ACTGGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	562, 825
BmuI	ACTGGG	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	822
BpmI	CTGGAG	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	890
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	4 cut(s)	457, 854, 855, 926
Bse1I	ACTGG	1 cut(s)	181
Bse21I	CCTNAGG	1 cut(s)	638
Bse3DI	GCAATG	1 cut(s)	437
Bse8I	GATNNNNATC	1 cut(s)	890
BseBI	CCWGG	2 cut(s)	111, 856
BseDI	CCNNGG	4 cut(s)	457, 854, 855, 926
BseGI	GGATG	6 cut(s)	512, 628, 757, 829, 840, 891
BseJI	GATNNNNATC	1 cut(s)	890
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	6 cut(s)	81, 86, 131, 246, 279, 629
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	631
BseXI	GCAGC	6 cut(s)	55, 125, 343, 472, 678, 695
BseYI	CCCAGC	5 cut(s)	100, 341, 359, 371, 467
BshFI	GGCC	3 cut(s)	218, 511, 932
BsiHKAI	GWGCWC	1 cut(s)	631
BsmAI	GTCTC	2 cut(s)	126, 126
BsmBI	CGTCTC	1 cut(s)	126
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	3 cut(s)	218, 511, 932
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp143I	GATC	3 cut(s)	284, 649, 891
BspACI	CCGC	4 cut(s)	141, 144, 147, 150
BspANI	GGCC	3 cut(s)	218, 511, 932
BspCNI	CTCAG	6 cut(s)	82, 87, 130, 245, 280, 630
BspHI	TCATGA	1 cut(s)	894
BspLI	GGNNCC	1 cut(s)	217
BspPI	GGATC	2 cut(s)	292, 899
BsrDI	GCAATG	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	4 cut(s)	457, 854, 855, 926
BssMI	GATC	3 cut(s)	284, 649, 891
BssNI	GRCGYC	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	874
BssT1I	CCWWGG	2 cut(s)	457, 926
Bst2BI	CACGAG	1 cut(s)	874
Bst2UI	CCWGG	2 cut(s)	111, 856
Bst4CI	ACNGT	1 cut(s)	633
Bst6I	CTCTTC	1 cut(s)	893
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	397
BstDEI	CTNAG	6 cut(s)	90, 95, 117, 232, 288, 638
BstF5I	GGATG	6 cut(s)	512, 628, 757, 829, 840, 891
BstKTI	GATC	3 cut(s)	287, 652, 894
BstMAI	GTCTC	2 cut(s)	126, 126
BstMBI	GATC	3 cut(s)	284, 649, 891
BstMWI	GCNNNNNNNGC	9 cut(s)	106, 144, 147, 347, 356, 401, 485, 491, 929
BstNI	CCWGG	2 cut(s)	111, 856
BstSCI	CCNGG	2 cut(s)	109, 854
BstSLI	GKGCMC	1 cut(s)	631
BstV1I	GCAGC	6 cut(s)	55, 125, 343, 472, 678, 695
BstV2I	GAAGAC	1 cut(s)	822
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
Bsu36I	CCTNAGG	1 cut(s)	638
BsuRI	GGCC	3 cut(s)	218, 511, 932
BtsCI	GGATG	6 cut(s)	512, 628, 757, 829, 840, 891
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	397
CciI	TCATGA	1 cut(s)	894
Cfr13I	GGNCC	3 cut(s)	216, 778, 930
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	634
CviAII	CATG	7 cut(s)	20, 443, 619, 737, 788, 895, 934
CviQI	GTAC	1 cut(s)	634
DdeI	CTNAG	6 cut(s)	90, 95, 117, 232, 288, 638
DpnI	GATC	3 cut(s)	286, 651, 893
DpnII	GATC	3 cut(s)	284, 649, 891
EaeI	YGGCCR	1 cut(s)	509
Eam1104I	CTCTTC	1 cut(s)	893
EarI	CTCTTC	1 cut(s)	893
Eco130I	CCWWGG	2 cut(s)	457, 926
Eco47I	GGWCC	1 cut(s)	778
Eco81I	CCTNAGG	1 cut(s)	638
EcoRI	GAATTC	1 cut(s)	535
EcoRII	CCWGG	2 cut(s)	109, 854
EcoT14I	CCWWGG	2 cut(s)	457, 926
ErhI	CCWWGG	2 cut(s)	457, 926
Esp3I	CGTCTC	1 cut(s)	126
FaeI	CATG	7 cut(s)	23, 446, 622, 740, 791, 898, 937
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	7 cut(s)	19, 442, 618, 736, 787, 894, 933
FblI	GTMKAC	1 cut(s)	473
Fnu4HI	GCNGC	9 cut(s)	69, 139, 142, 145, 148, 357, 486, 667, 709
FokI	GGATG	6 cut(s)	519, 635, 764, 836, 847, 898
Fsp4HI	GCNGC	9 cut(s)	69, 139, 142, 145, 148, 357, 486, 667, 709
FspBI	CTAG	3 cut(s)	686, 839, 920
GluI	GCNGC	9 cut(s)	69, 139, 142, 145, 148, 357, 486, 667, 709
GsaI	CCCAGC	5 cut(s)	104, 345, 363, 375, 471
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	218, 511, 932
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	7 cut(s)	23, 446, 622, 740, 791, 898, 937
HinfI	GANTC	2 cut(s)	766, 872
HphI	GGTGA	5 cut(s)	578, 799, 839, 857, 859
Hpy166II	GTNNAC	5 cut(s)	368, 474, 629, 734, 867
Hpy188I	TCNGA	3 cut(s)	235, 289, 907
Hpy188III	TCNNGA	4 cut(s)	125, 674, 692, 895
Hpy8I	GTNNAC	5 cut(s)	368, 474, 629, 734, 867
HpyAV	CCTTC	4 cut(s)	51, 163, 564, 572
HpyCH4III	ACNGT	1 cut(s)	633
HpyCH4V	TGCA	6 cut(s)	442, 488, 575, 629, 937, 945
HpyF10VI	GCNNNNNNNGC	9 cut(s)	106, 144, 147, 347, 356, 401, 485, 491, 929
HpyF3I	CTNAG	6 cut(s)	90, 95, 117, 232, 288, 638
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	7 cut(s)	23, 446, 622, 740, 791, 898, 937
Kzo9I	GATC	3 cut(s)	284, 649, 891
LmnI	GCTCC	4 cut(s)	16, 248, 590, 740
Lsp1109I	GCAGC	6 cut(s)	55, 125, 343, 472, 678, 695
LweI	GCATC	2 cut(s)	562, 825
MaeI	CTAG	3 cut(s)	686, 839, 920
MalI	GATC	3 cut(s)	286, 651, 893
MboI	GATC	3 cut(s)	284, 649, 891
MboII	GAAGA	4 cut(s)	460, 544, 827, 910
MfeI	CAATTG	1 cut(s)	717
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	631
MlsI	TGGCCA	1 cut(s)	511
MluCI	AATT	4 cut(s)	516, 535, 717, 955
MluNI	TGGCCA	1 cut(s)	511
MlyI	GAGTC	2 cut(s)	775, 866
MmeI	TCCRAC	1 cut(s)	445
Mox20I	TGGCCA	1 cut(s)	511
MscI	TGGCCA	1 cut(s)	511
MseI	TTAA	2 cut(s)	198, 609
Msp20I	TGGCCA	1 cut(s)	511
MspA1I	CMGCKG	1 cut(s)	708
MspR9I	CCNGG	2 cut(s)	111, 856
MunI	CAATTG	1 cut(s)	717
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	2 cut(s)	111, 856
MwoI	GCNNNNNNNGC	9 cut(s)	106, 144, 147, 347, 356, 401, 485, 491, 929
NdeII	GATC	3 cut(s)	284, 649, 891
NlaIII	CATG	7 cut(s)	23, 446, 622, 740, 791, 898, 937
NlaIV	GGNNCC	1 cut(s)	217
PagI	TCATGA	1 cut(s)	894
PasI	CCCWGGG	1 cut(s)	855
PctI	GAATGC	1 cut(s)	343
PkrI	GCNGC	9 cut(s)	70, 140, 143, 146, 149, 358, 487, 668, 710
PleI	GAGTC	2 cut(s)	774, 866
PpsI	GAGTC	2 cut(s)	774, 866
Psp6I	CCWGG	2 cut(s)	109, 854
PspFI	CCCAGC	5 cut(s)	100, 341, 359, 371, 467
PspGI	CCWGG	2 cut(s)	109, 854
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	3 cut(s)	216, 778, 930
PsuI	RGATCY	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	708
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
SaqAI	TTAA	2 cut(s)	198, 609
SatI	GCNGC	9 cut(s)	69, 139, 142, 145, 148, 357, 486, 667, 709
Sau3AI	GATC	3 cut(s)	284, 649, 891
Sau96I	GGNCC	3 cut(s)	216, 778, 930
SchI	GAGTC	2 cut(s)	775, 866
ScrFI	CCNGG	2 cut(s)	111, 856
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	2 cut(s)	562, 825
SinI	GGWCC	1 cut(s)	778
Sse9I	AATT	4 cut(s)	516, 535, 717, 955
SsiI	CCGC	4 cut(s)	141, 144, 147, 150
SspMI	CTAG	3 cut(s)	686, 839, 920
StyD4I	CCNGG	2 cut(s)	109, 854
StyI	CCWWGG	2 cut(s)	457, 926
TaaI	ACNGT	1 cut(s)	633
TaqI	TCGA	1 cut(s)	769
TaqII	GACCGA	1 cut(s)	905
TasI	AATT	4 cut(s)	516, 535, 717, 955
TauI	GCSGC	3 cut(s)	144, 147, 150
Tru1I	TTAA	2 cut(s)	198, 609
Tru9I	TTAA	2 cut(s)	198, 609
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	6 cut(s)	68, 138, 356, 485, 666, 708
TspDTI	ATGAA	2 cut(s)	828, 911
TspGWI	ACGGA	1 cut(s)	538
TspRI	CASTG	1 cut(s)	94
VneI	GTGCAC	1 cut(s)	627
VpaK11BI	GGWCC	1 cut(s)	778
XapI	RAATTY	1 cut(s)	535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	473
XspI	CTAG	3 cut(s)	686, 839, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.