Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Forward (+)

15104026 .. 15107317

Gene Structure 3292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1191800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTCTATTTCTTTGGAGCATGATTACATAGGCTTATCTCCTTCAATGGAAACCTCTGACAAGTCTGCTGCTTTGAACCTCAAAGCCACTGAGCTGAGACTGGGCTTGCCTGGCTCCCAATCCCCACAGAGAGACAGCGGCGGCGGCGGTGGTGGGGTGGAGGAGAAAGCTGCTGGGTTTTCAGCATGTGGGGTTAAGGGGTTGGTGTCTGGGGCCAAGAGGGGATTCTCAGACGCCATTGATGGAGCTTCTGGAAAGTGGGTTTTCTCTGGGAGTGGTGGATCTGAGGTGGAGTTGGGAAAAGGTGGAAACTTGCTTTCTCCTAGAAGTGTGCATGCTGGGAAAACTCTTGCTGCTGGGAGTGAACCCAGCAAGCAACCAACTGGTTTAGCTGGGTCTAATGTGAAAGATGGTGTCCAACAGTCTCCAAAGCCATTGCATGAGAAGAAATCCCAAGGGTCTGCTGGGTCTACTGCCCCTGCTGCAAAGGCACAGGTTGTAGGATGGCCACCAATTCGTTCTTTCCGGAAAAATTCAATGGCTTCCGTTCCTTCGAAAAATGATGATGATGCTGAAGGCAAGATGGGAGCAGGGTGTCTATATGTTAAGGTCAGCATGGATGGTGCACCGTACCTGAGGAAAGTTGATCTGAAAACCTACGGTAGCTATCTGGAGTTATCTCTAGCTCTGGAAAAGATGTTCAGCTGCTTTACAATCGGTCATTGTGGCTCACATGGAGCTTCGAGAGATGGATTGAGCGAGAGTCGATTGATGGATCTTCTACATGGTGCTGAATATGTCCTCACCTATGAAGACAAGGATGGCGATTGGATGCTAGTTGGTGATGTTCCCTGGGAAATGTTTACCGACTCATGTAAGAGGATGAGGATCATGAAGAGTTCAGAGGCTATGGGTCTAGCCCCCAGGGCCATGCAGAAGTGCAAAAATAGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

319

Amino Acids

33.29

Weight (kDa)

8.41

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	29 - 309	2.7e-88	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	470
AccIII	TCCGGA	1 cut(s)	525
AciI	CCGC	4 cut(s)	138, 141, 144, 147
AclWI	GGATC	3 cut(s)	289, 783, 896
AcoI	YGGCCR	1 cut(s)	506
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	594
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	1 cut(s)	632
AgsI	TTSAA	3 cut(s)	45, 76, 537
AjnI	CCWGG	3 cut(s)	109, 851, 923
AjuI	GAANNNNNNNTTGG	2 cut(s)	209, 241
AloI	GAACNNNNNNTCC	2 cut(s)	683, 715
AluBI	AGCT	8 cut(s)	94, 170, 248, 392, 666, 686, 705, 740
AluI	AGCT	8 cut(s)	94, 170, 248, 392, 666, 686, 705, 740
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	3 cut(s)	91, 126, 429
Alw44I	GTGCAC	1 cut(s)	624
AlwI	GGATC	3 cut(s)	289, 783, 896
Aor13HI	TCCGGA	1 cut(s)	525
AoxI	GGCC	3 cut(s)	213, 506, 927
ApaLI	GTGCAC	1 cut(s)	624
ApeKI	GCWGC	5 cut(s)	68, 170, 353, 482, 705
ApoI	RAATTY	1 cut(s)	532
AspS9I	GGNCC	2 cut(s)	213, 927
AsuHPI	GGTGA	2 cut(s)	796, 854
AsuII	TTCGAA	1 cut(s)	554
AxyI	CCTNAGG	1 cut(s)	635
BaeGI	GKGCMC	1 cut(s)	628
BalI	TGGCCA	1 cut(s)	508
BbsI	GAAGAC	1 cut(s)	819
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	5 cut(s)	55, 157, 340, 469, 692
BccI	CCATC	8 cut(s)	236, 404, 498, 577, 614, 743, 766, 815
BciT130I	CCWGG	3 cut(s)	111, 853, 925
BcoDI	GTCTC	3 cut(s)	91, 126, 429
BfaI	CTAG	4 cut(s)	324, 683, 836, 917
BglI	GCCNNNNNGGC	1 cut(s)	926
BisI	GCNGC	8 cut(s)	69, 139, 142, 145, 171, 354, 483, 706
BlsI	GCNGC	8 cut(s)	70, 140, 143, 146, 172, 355, 484, 707
Bme1390I	CCNGG	3 cut(s)	111, 853, 925
BmgT120I	GGNCC	2 cut(s)	213, 927
BmiI	GGNNCC	2 cut(s)	115, 214
BmrFI	CCNGG	3 cut(s)	111, 853, 925
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	2 cut(s)	559, 822
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	819
BpmI	CTGGAG	1 cut(s)	692
Bpu14I	TTCGAA	1 cut(s)	554
BsaBI	GATNNNNATC	1 cut(s)	887
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	5 cut(s)	454, 851, 852, 923, 924
BsaWI	WCCGGW	1 cut(s)	525
Bse1I	ACTGG	2 cut(s)	105, 388
Bse21I	CCTNAGG	1 cut(s)	635
Bse3DI	GCAATG	1 cut(s)	434
Bse8I	GATNNNNATC	1 cut(s)	887
BseAI	TCCGGA	1 cut(s)	525
BseBI	CCWGG	3 cut(s)	111, 853, 925
BseDI	CCNNGG	5 cut(s)	454, 851, 852, 923, 924
BseGI	GGATG	5 cut(s)	509, 625, 826, 837, 888
BseJI	GATNNNNATC	1 cut(s)	887
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	5 cut(s)	81, 86, 243, 276, 626
BseNI	ACTGG	2 cut(s)	105, 388
BseRI	GAGGAG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	5 cut(s)	55, 157, 340, 469, 692
BseYI	CCCAGC	6 cut(s)	173, 338, 356, 368, 392, 464
BshFI	GGCC	3 cut(s)	215, 508, 929
BsiHKAI	GWGCWC	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	526
BsmAI	GTCTC	3 cut(s)	91, 126, 429
BsnI	GGCC	3 cut(s)	215, 508, 929
Bsp119I	TTCGAA	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp13I	TCCGGA	1 cut(s)	525
Bsp143I	GATC	4 cut(s)	281, 646, 775, 888
BspACI	CCGC	4 cut(s)	138, 141, 144, 147
BspANI	GGCC	3 cut(s)	215, 508, 929
BspCNI	CTCAG	5 cut(s)	82, 87, 242, 277, 627
BspEI	TCCGGA	1 cut(s)	525
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	2 cut(s)	115, 214
BspPI	GGATC	3 cut(s)	289, 783, 896
BspT104I	TTCGAA	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	105, 388
BssECI	CCNNGG	5 cut(s)	454, 851, 852, 923, 924
BssMI	GATC	4 cut(s)	281, 646, 775, 888
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	454
Bst2UI	CCWGG	3 cut(s)	111, 853, 925
Bst4CI	ACNGT	3 cut(s)	423, 630, 662
Bst6I	CTCTTC	1 cut(s)	890
BstACI	GRCGYC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	554
BstC8I	GCNNGC	3 cut(s)	107, 336, 374
BstDEI	CTNAG	5 cut(s)	90, 95, 229, 285, 635
BstF5I	GGATG	5 cut(s)	509, 625, 826, 837, 888
BstKTI	GATC	4 cut(s)	284, 649, 778, 891
BstMAI	GTCTC	3 cut(s)	91, 126, 429
BstMBI	GATC	4 cut(s)	281, 646, 775, 888
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 144, 482, 488, 926
BstNI	CCWGG	3 cut(s)	111, 853, 925
BstNSI	RCATGY	2 cut(s)	189, 338
BstSCI	CCNGG	3 cut(s)	109, 851, 923
BstSLI	GKGCMC	1 cut(s)	628
BstV1I	GCAGC	5 cut(s)	55, 157, 340, 469, 692
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	2 cut(s)	281, 775
BstYI	RGATCY	2 cut(s)	281, 775
Bsu36I	CCTNAGG	1 cut(s)	635
BsuRI	GGCC	3 cut(s)	215, 508, 929
BtsCI	GGATG	5 cut(s)	509, 625, 826, 837, 888
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	3 cut(s)	107, 336, 374
CciI	TCATGA	1 cut(s)	891
Cfr13I	GGNCC	2 cut(s)	213, 927
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	631
CviQI	GTAC	1 cut(s)	631
DdeI	CTNAG	5 cut(s)	90, 95, 229, 285, 635
DpnI	GATC	4 cut(s)	283, 648, 777, 890
DpnII	GATC	4 cut(s)	281, 646, 775, 888
EaeI	YGGCCR	1 cut(s)	506
Eam1104I	CTCTTC	1 cut(s)	890
EarI	CTCTTC	1 cut(s)	890
Eco130I	CCWWGG	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	594
Eco81I	CCTNAGG	1 cut(s)	635
EcoRII	CCWGG	3 cut(s)	109, 851, 923
EcoT14I	CCWWGG	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	8 cut(s)	69, 139, 142, 145, 171, 354, 483, 706
FokI	GGATG	5 cut(s)	516, 632, 833, 844, 895
Fsp4HI	GCNGC	8 cut(s)	69, 139, 142, 145, 171, 354, 483, 706
FspBI	CTAG	4 cut(s)	324, 683, 836, 917
GluI	GCNGC	8 cut(s)	69, 139, 142, 145, 171, 354, 483, 706
GsaI	CCCAGC	6 cut(s)	177, 342, 360, 372, 396, 468
GsuI	CTGGAG	1 cut(s)	692
HaeIII	GGCC	3 cut(s)	215, 508, 929
HapII	CCGG	1 cut(s)	526
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	234
HinfI	GANTC	3 cut(s)	225, 763, 869
HpaII	CCGG	1 cut(s)	526
HphI	GGTGA	2 cut(s)	796, 854
Hpy166II	GTNNAC	4 cut(s)	365, 471, 626, 864
Hpy188I	TCNGA	5 cut(s)	58, 232, 286, 651, 904
Hpy188III	TCNNGA	6 cut(s)	252, 526, 671, 689, 744, 892
Hpy8I	GTNNAC	4 cut(s)	365, 471, 626, 864
HpyAV	CCTTC	3 cut(s)	51, 561, 569
HpyCH4III	ACNGT	3 cut(s)	423, 630, 662
HpyCH4V	TGCA	6 cut(s)	334, 439, 485, 626, 934, 942
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 144, 482, 488, 926
HpyF3I	CTNAG	5 cut(s)	90, 95, 229, 285, 635
Hsp92I	GRCGYC	1 cut(s)	234
Kpn2I	TCCGGA	1 cut(s)	525
Kzo9I	GATC	4 cut(s)	281, 646, 775, 888
LmnI	GCTCC	5 cut(s)	16, 119, 245, 587, 737
Lsp1109I	GCAGC	5 cut(s)	55, 157, 340, 469, 692
LweI	GCATC	2 cut(s)	559, 822
MaeI	CTAG	4 cut(s)	324, 683, 836, 917
MalI	GATC	4 cut(s)	283, 648, 777, 890
MboI	GATC	4 cut(s)	281, 646, 775, 888
MboII	GAAGA	4 cut(s)	457, 770, 824, 907
MflI	RGATCY	2 cut(s)	281, 775
MhlI	GDGCHC	1 cut(s)	628
MlsI	TGGCCA	1 cut(s)	508
MluCI	AATT	3 cut(s)	513, 532, 952
MluNI	TGGCCA	1 cut(s)	508
MlyI	GAGTC	2 cut(s)	772, 863
MmeI	TCCRAC	1 cut(s)	442
Mox20I	TGGCCA	1 cut(s)	508
MroI	TCCGGA	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	508
MseI	TTAA	2 cut(s)	195, 606
Msp20I	TGGCCA	1 cut(s)	508
MspA1I	CMGCKG	2 cut(s)	138, 705
MspI	CCGG	1 cut(s)	526
MspR9I	CCNGG	3 cut(s)	111, 853, 925
MvaI	CCWGG	3 cut(s)	111, 853, 925
MwoI	GCNNNNNNNGC	5 cut(s)	111, 144, 482, 488, 926
NdeII	GATC	4 cut(s)	281, 646, 775, 888
NlaIV	GGNNCC	2 cut(s)	115, 214
NspI	RCATGY	2 cut(s)	189, 338
NspV	TTCGAA	1 cut(s)	554
PaeI	GCATGC	1 cut(s)	338
PagI	TCATGA	1 cut(s)	891
PasI	CCCWGGG	2 cut(s)	852, 924
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	8 cut(s)	70, 140, 143, 146, 172, 355, 484, 707
PleI	GAGTC	2 cut(s)	771, 863
PpsI	GAGTC	2 cut(s)	771, 863
Psp6I	CCWGG	3 cut(s)	109, 851, 923
PspFI	CCCAGC	6 cut(s)	173, 338, 356, 368, 392, 464
PspGI	CCWGG	3 cut(s)	109, 851, 923
PspN4I	GGNNCC	2 cut(s)	115, 214
PspPI	GGNCC	2 cut(s)	213, 927
PsuI	RGATCY	2 cut(s)	281, 775
PvuII	CAGCTG	1 cut(s)	705
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
SaqAI	TTAA	2 cut(s)	195, 606
SatI	GCNGC	8 cut(s)	69, 139, 142, 145, 171, 354, 483, 706
Sau3AI	GATC	4 cut(s)	281, 646, 775, 888
Sau96I	GGNCC	2 cut(s)	213, 927
SchI	GAGTC	2 cut(s)	772, 863
ScrFI	CCNGG	3 cut(s)	111, 853, 925
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	2 cut(s)	559, 822
SfuI	TTCGAA	1 cut(s)	554
SphI	GCATGC	1 cut(s)	338
Sse9I	AATT	3 cut(s)	513, 532, 952
SsiI	CCGC	4 cut(s)	138, 141, 144, 147
SspMI	CTAG	4 cut(s)	324, 683, 836, 917
StyD4I	CCNGG	3 cut(s)	109, 851, 923
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	3 cut(s)	423, 630, 662
TaqI	TCGA	3 cut(s)	554, 743, 766
TaqII	GACCGA	1 cut(s)	707
TasI	AATT	3 cut(s)	513, 532, 952
TauI	GCSGC	3 cut(s)	141, 144, 147
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	2 cut(s)	195, 606
Tru9I	TTAA	2 cut(s)	195, 606
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	5 cut(s)	68, 170, 353, 482, 705
TspDTI	ATGAA	2 cut(s)	825, 908
TspGWI	ACGGA	1 cut(s)	535
TspRI	CASTG	1 cut(s)	94
VneI	GTGCAC	1 cut(s)	624
XapI	RAATTY	1 cut(s)	532
XceI	RCATGY	2 cut(s)	189, 338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	4 cut(s)	324, 683, 836, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.