Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Reverse (-)

4585165 .. 4588237

Gene Structure 3073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G064200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTCTATGCCACTGGAGCATGATTACATAGGCTTAACAGAGACTTCTTCAATGGAAAGAAGCTCTGAAAAGATTTCTTCTTCCTCTTCCTCTGCCCTCTCCACAACAGAGGATGAGAAGGGCTCTGCTTTCAACCTCAAGGAGACTGAGCTAAGGCTTGGCTTGCCTGGTTCTCGCTCTCCCGACAGAAAATCAGGACTTGGAATTGGGGTCTCTATTTTTGGTAAAGATTTGGAGGATAACAACCATAATGGTTATTCTCCAAACCCTTCAAAGAACCCTGTGTCTGGGGCTAAGAGGGGCTTCTCTGATGCCATTGATGGCTCTTCTGAGAAATGGGTTTTTGGATCTGAGGTTGATATGGGTAAAGGAGCAATCTTGTTCTCTCCTAGAGGTATGAATAATGTTAAGTCTCTTGGTGTTGAGAGTAATGGTAAAACCCAACAGTTATGTGCTTCTGCACAAGCCAAGCAAGAGGTTGCTTCTGTTCCTCAATCACCAAAGCCAGTCCTGGAGAAGAAGACTCAGGTCTCTGAGCATGCTAGTGCTCCTGCTGCCAAGGCACAGGTGGTAGGATGGCCCCCAATTCGATCATTTCGGAAAAACTCCATGGCCTCTAATTTGGCAAAGAACAATGATGATGCTGAGGGCAAACAAGGGTCTGGGTGCCTTTATGTGAAAGTTAGCATGGATGGTGCTCCTTACCTGCGGAAGGTTGACCTTAAAACCTACAACAACTACACTGAACTCTCCATGGCTTTGGAGAAGATGTTTAGCTGCTTCACCATCGGGCAGTGCAGCTCTAATGGAATTCCAGAGCGAGATGGCCTGAGTGCGAGTCGGTTGATGGATCTTCTCCATGGTTCTGAATTTGTTCTGACTTATGAAGACAAGGATGATGATTGGATGCTTGTTGGTGATGTTCCTTGGAAGATGTTCACTGAGACGTGTAGGAGGCTAAGGATCATGAAAGGTTCCGAAGCAATCGGGCTAGCTCCAAGGGCCGTGGAGAAGTGCAAGAACCGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

344

Amino Acids

37.24

Weight (kDa)

7.56

Isoelectric Point (pI)

46.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	714
AccB1I	GGYRCC	1 cut(s)	666
AciI	CCGC	2 cut(s)	709, 1024
AclWI	GGATC	3 cut(s)	355, 858, 971
AcsI	RAATTY	2 cut(s)	810, 869
AfiI	CCNNNNNNNGG	2 cut(s)	287, 712
AflIII	ACRYGT	1 cut(s)	947
AgsI	TTSAA	3 cut(s)	51, 133, 273
AjiI	CACGTC	1 cut(s)	948
AjnI	CCWGG	2 cut(s)	166, 510
AluBI	AGCT	5 cut(s)	63, 151, 777, 801, 995
AluI	AGCT	5 cut(s)	63, 151, 777, 801, 995
Alw21I	GWGCWC	2 cut(s)	550, 700
Alw26I	GTCTC	6 cut(s)	35, 137, 217, 417, 535, 938
AlwI	GGATC	3 cut(s)	355, 858, 971
AoxI	GGCC	4 cut(s)	578, 612, 826, 1002
ApeKI	GCWGC	3 cut(s)	554, 777, 798
ApoI	RAATTY	2 cut(s)	810, 869
Asp700I	GAANNNNTTC	2 cut(s)	873, 935
AspS9I	GGNCC	2 cut(s)	579, 1002
AsuHPI	GGTGA	3 cut(s)	489, 775, 929
AsuNHI	GCTAGC	1 cut(s)	991
BanI	GGYRCC	1 cut(s)	666
BanII	GRGCYC	1 cut(s)	125
BbsI	GAAGAC	2 cut(s)	527, 894
Bbv12I	GWGCWC	2 cut(s)	550, 700
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	3 cut(s)	541, 764, 810
BccI	CCATC	6 cut(s)	314, 570, 686, 794, 818, 841
BceAI	ACGGC	1 cut(s)	989
BciT130I	CCWGG	2 cut(s)	168, 512
BcoDI	GTCTC	6 cut(s)	35, 137, 217, 417, 535, 938
BfaI	CTAG	3 cut(s)	390, 543, 992
BfuAI	ACCTGC	1 cut(s)	714
BisI	GCNGC	3 cut(s)	555, 778, 799
BlsI	GCNGC	3 cut(s)	556, 779, 800
Bme1390I	CCNGG	2 cut(s)	168, 512
BmgBI	CACGTC	1 cut(s)	948
BmgT120I	GGNCC	2 cut(s)	579, 1002
BmiI	GGNNCC	3 cut(s)	581, 668, 976
BmrFI	CCNGG	2 cut(s)	168, 512
BmsI	GCATC	3 cut(s)	301, 631, 897
BmtI	GCTAGC	1 cut(s)	995
BoxI	GACNNNNGTC	1 cut(s)	527
BpiI	GAAGAC	2 cut(s)	527, 894
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
BpmI	CTGGAG	2 cut(s)	35, 533
Bpu10I	CCTNAGC	3 cut(s)	152, 645, 959
BpuEI	CTTGAG	1 cut(s)	122
BsaI	GGTCTC	2 cut(s)	217, 535
BsaJI	CCNNGG	7 cut(s)	558, 609, 753, 859, 926, 998, 1005
BsaXI	ACNNNNNCTCC	2 cut(s)	755, 785
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 712
Bse1I	ACTGG	2 cut(s)	18, 506
BseBI	CCWGG	2 cut(s)	168, 512
BseDI	CCNNGG	7 cut(s)	558, 609, 753, 859, 926, 998, 1005
BseGI	GGATG	5 cut(s)	118, 581, 697, 901, 912
BseLI	CCNNNNNNNGG	2 cut(s)	287, 712
BseMII	CTCAG	8 cut(s)	138, 321, 342, 525, 539, 636, 821, 933
BseNI	ACTGG	2 cut(s)	18, 506
BseXI	GCAGC	3 cut(s)	541, 764, 810
BsgI	GTGCAG	2 cut(s)	444, 817
BshFI	GGCC	4 cut(s)	580, 614, 828, 1004
BshNI	GGYRCC	1 cut(s)	666
BsiHKAI	GWGCWC	2 cut(s)	550, 700
BslI	CCNNNNNNNGG	2 cut(s)	287, 712
BsmAI	GTCTC	6 cut(s)	35, 137, 217, 417, 535, 938
BsmBI	CGTCTC	1 cut(s)	938
BsnI	GGCC	4 cut(s)	580, 614, 828, 1004
Bso31I	GGTCTC	2 cut(s)	217, 535
Bsp1286I	GDGCHC	3 cut(s)	125, 550, 700
Bsp143I	GATC	4 cut(s)	347, 590, 850, 963
Bsp19I	CCATGG	3 cut(s)	609, 753, 859
BspACI	CCGC	2 cut(s)	709, 1024
BspANI	GGCC	4 cut(s)	580, 614, 828, 1004
BspCNI	CTCAG	8 cut(s)	139, 322, 343, 526, 538, 637, 822, 934
BspHI	TCATGA	1 cut(s)	966
BspLI	GGNNCC	3 cut(s)	581, 668, 976
BspMI	ACCTGC	1 cut(s)	714
BspOI	GCTAGC	1 cut(s)	995
BspPI	GGATC	3 cut(s)	355, 858, 971
BspQI	GCTCTTC	1 cut(s)	331
BspT107I	GGYRCC	1 cut(s)	666
BspTNI	GGTCTC	2 cut(s)	217, 535
BsrI	ACTGG	2 cut(s)	18, 506
BssECI	CCNNGG	7 cut(s)	558, 609, 753, 859, 926, 998, 1005
BssMI	GATC	4 cut(s)	347, 590, 850, 963
BssT1I	CCWWGG	6 cut(s)	558, 609, 753, 859, 926, 998
Bst2UI	CCWGG	2 cut(s)	168, 512
Bst4CI	ACNGT	1 cut(s)	447
Bst6I	CTCTTC	2 cut(s)	91, 331
BstC8I	GCNNGC	3 cut(s)	164, 540, 993
BstDSI	CCRYGG	4 cut(s)	609, 753, 859, 1005
BstENI	CCTNNNNNAGG	1 cut(s)	710
BstF5I	GGATG	5 cut(s)	118, 581, 697, 901, 912
BstKTI	GATC	4 cut(s)	350, 593, 853, 966
BstMAI	GTCTC	6 cut(s)	35, 137, 217, 417, 535, 938
BstMBI	GATC	4 cut(s)	347, 590, 850, 963
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 163, 554, 560, 1001, 1023
BstNI	CCWGG	2 cut(s)	168, 512
BstNSI	RCATGY	1 cut(s)	542
BstPAI	GACNNNNGTC	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	166, 510
BstV1I	GCAGC	3 cut(s)	541, 764, 810
BstV2I	GAAGAC	2 cut(s)	527, 894
BstX2I	RGATCY	2 cut(s)	347, 850
BstXI	CCANNNNNNTGG	1 cut(s)	760
BstYI	RGATCY	2 cut(s)	347, 850
BsuRI	GGCC	4 cut(s)	580, 614, 828, 1004
BtgI	CCRYGG	4 cut(s)	609, 753, 859, 1005
BtrI	CACGTC	1 cut(s)	948
BtsCI	GGATG	5 cut(s)	118, 581, 697, 901, 912
BtsI	GCAGTG	1 cut(s)	800
BtsIMutI	CAGTG	4 cut(s)	11, 741, 800, 939
BveI	ACCTGC	1 cut(s)	714
Cac8I	GCNNGC	3 cut(s)	164, 540, 993
CciI	TCATGA	1 cut(s)	966
Cfr13I	GGNCC	2 cut(s)	579, 1002
CspCI	CAANNNNNGTGG	2 cut(s)	987, 1022
CviAII	CATG	7 cut(s)	20, 539, 610, 688, 754, 860, 967
DpnI	GATC	4 cut(s)	349, 592, 852, 965
DpnII	GATC	4 cut(s)	347, 590, 850, 963
Eam1104I	CTCTTC	2 cut(s)	91, 331
EarI	CTCTTC	2 cut(s)	91, 331
Eco130I	CCWWGG	6 cut(s)	558, 609, 753, 859, 926, 998
Eco24I	GRGCYC	1 cut(s)	125
Eco31I	GGTCTC	2 cut(s)	217, 535
EcoNI	CCTNNNNNAGG	1 cut(s)	710
EcoRI	GAATTC	1 cut(s)	810
EcoRII	CCWGG	2 cut(s)	166, 510
EcoT14I	CCWWGG	6 cut(s)	558, 609, 753, 859, 926, 998
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	6 cut(s)	558, 609, 753, 859, 926, 998
Esp3I	CGTCTC	1 cut(s)	938
FaeI	CATG	7 cut(s)	23, 542, 613, 691, 757, 863, 970
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FatI	CATG	7 cut(s)	19, 538, 609, 687, 753, 859, 966
Fnu4HI	GCNGC	3 cut(s)	555, 778, 799
FokI	GGATG	5 cut(s)	125, 588, 704, 908, 919
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	3 cut(s)	555, 778, 799
FspBI	CTAG	3 cut(s)	390, 543, 992
GluI	GCNGC	3 cut(s)	555, 778, 799
GsuI	CTGGAG	2 cut(s)	35, 533
HaeIII	GGCC	4 cut(s)	580, 614, 828, 1004
Hin1II	CATG	7 cut(s)	23, 542, 613, 691, 757, 863, 970
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HinfI	GANTC	2 cut(s)	523, 838
HphI	GGTGA	3 cut(s)	489, 775, 929
Hpy166II	GTNNAC	2 cut(s)	718, 939
Hpy188I	TCNGA	9 cut(s)	67, 310, 331, 352, 535, 600, 868, 879, 979
Hpy188III	TCNNGA	4 cut(s)	182, 195, 815, 967
Hpy8I	GTNNAC	2 cut(s)	718, 939
HpyAV	CCTTC	3 cut(s)	112, 279, 706
HpyCH4III	ACNGT	1 cut(s)	447
HpyCH4IV	ACGT	1 cut(s)	947
HpyCH4V	TGCA	3 cut(s)	461, 798, 1017
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 163, 554, 560, 1001, 1023
HpySE526I	ACGT	1 cut(s)	947
Hsp92II	CATG	7 cut(s)	23, 542, 613, 691, 757, 863, 970
Kzo9I	GATC	4 cut(s)	347, 590, 850, 963
LguI	GCTCTTC	1 cut(s)	331
LmnI	GCTCC	5 cut(s)	16, 371, 553, 703, 1000
Lsp1109I	GCAGC	3 cut(s)	541, 764, 810
LweI	GCATC	3 cut(s)	301, 631, 897
MaeI	CTAG	3 cut(s)	390, 543, 992
MaeII	ACGT	1 cut(s)	947
MalI	GATC	4 cut(s)	349, 592, 852, 965
MboI	GATC	4 cut(s)	347, 590, 850, 963
MflI	RGATCY	2 cut(s)	347, 850
MhlI	GDGCHC	3 cut(s)	125, 550, 700
MluCI	AATT	5 cut(s)	204, 585, 619, 810, 869
MlyI	GAGTC	2 cut(s)	517, 847
MroXI	GAANNNNTTC	2 cut(s)	873, 935
MseI	TTAA	3 cut(s)	35, 408, 723
MslI	CAYNNNNRTG	1 cut(s)	543
MspR9I	CCNGG	2 cut(s)	168, 512
MvaI	CCWGG	2 cut(s)	168, 512
MwoI	GCNNNNNNNGC	6 cut(s)	16, 163, 554, 560, 1001, 1023
NcoI	CCATGG	3 cut(s)	609, 753, 859
NdeII	GATC	4 cut(s)	347, 590, 850, 963
NheI	GCTAGC	1 cut(s)	991
NlaIII	CATG	7 cut(s)	23, 542, 613, 691, 757, 863, 970
NlaIV	GGNNCC	3 cut(s)	581, 668, 976
NspI	RCATGY	1 cut(s)	542
PaeI	GCATGC	1 cut(s)	542
PagI	TCATGA	1 cut(s)	966
PciSI	GCTCTTC	1 cut(s)	331
PdmI	GAANNNNTTC	2 cut(s)	873, 935
PfoI	TCCNGGA	1 cut(s)	510
PkrI	GCNGC	3 cut(s)	556, 779, 800
PleI	GAGTC	2 cut(s)	517, 846
PpsI	GAGTC	2 cut(s)	517, 846
PshAI	GACNNNNGTC	1 cut(s)	527
Psp6I	CCWGG	2 cut(s)	166, 510
PspGI	CCWGG	2 cut(s)	166, 510
PspN4I	GGNNCC	3 cut(s)	581, 668, 976
PspPI	GGNCC	2 cut(s)	579, 1002
PsuI	RGATCY	2 cut(s)	347, 850
RseI	CAYNNNNRTG	1 cut(s)	543
SapI	GCTCTTC	1 cut(s)	331
SaqAI	TTAA	3 cut(s)	35, 408, 723
SatI	GCNGC	3 cut(s)	555, 778, 799
Sau3AI	GATC	4 cut(s)	347, 590, 850, 963
Sau96I	GGNCC	2 cut(s)	579, 1002
SchI	GAGTC	2 cut(s)	517, 847
ScrFI	CCNGG	2 cut(s)	168, 512
SduI	GDGCHC	3 cut(s)	125, 550, 700
SfaNI	GCATC	3 cut(s)	301, 631, 897
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SphI	GCATGC	1 cut(s)	542
Sse9I	AATT	5 cut(s)	204, 585, 619, 810, 869
SsiI	CCGC	2 cut(s)	709, 1024
SspMI	CTAG	3 cut(s)	390, 543, 992
StyD4I	CCNGG	2 cut(s)	166, 510
StyI	CCWWGG	6 cut(s)	558, 609, 753, 859, 926, 998
TaaI	ACNGT	1 cut(s)	447
TaiI	ACGT	1 cut(s)	950
TaqI	TCGA	1 cut(s)	589
TasI	AATT	5 cut(s)	204, 585, 619, 810, 869
Tru1I	TTAA	3 cut(s)	35, 408, 723
Tru9I	TTAA	3 cut(s)	35, 408, 723
TscAI	CASTG	4 cut(s)	18, 748, 800, 946
TseI	GCWGC	3 cut(s)	554, 777, 798
TspDTI	ATGAA	3 cut(s)	413, 900, 983
TspRI	CASTG	4 cut(s)	18, 748, 800, 946
XagI	CCTNNNNNAGG	1 cut(s)	710
XapI	RAATTY	2 cut(s)	810, 869
XceI	RCATGY	1 cut(s)	542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XmnI	GAANNNNTTC	2 cut(s)	873, 935
XspI	CTAG	3 cut(s)	390, 543, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.