Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Forward (+)

4927961 .. 4932758

Gene Structure 4798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG060800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCTATGTCCTTGGAGCATGATTACATAGGCTTATCTGAGTCTGTTCCTTCAATGGAAGCCTCTGACAGGTCTAACAAGGGAGCTGCTTTGAACCTCAAAGCCACTGAGCTCAGGCTGGGCTTGCCTGGGTCTGAGTCCCCAGAGAGAGATAGTGGTGGTGTGGAGGACAAAACTGGGTTTTCACTGCCTGTGCCTAAACCCTCTGTGTCTGGAGCCAAGAGGGTGTTCTCTGACGCCATTGATGGAGCTTCTGGGAAGTGGGTTTTCTCTGGGAGTGGTGGATCTGAGGCTGATTTGGGTAAAGGTGGTAACTTGGTTTCTCCTAGAGGTGTTAATGGTGGAAAAGGTCTTGCTGGGCCTGAGTGTAAGAGTCAACCAATCTCTGCAGTGAAAGATGGGGTACAACAGTCCCCAAACCCTTTGCATGAGAAGAAGCCTCAGGTTTCTGCTCCTGCAGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

155

Amino Acids

15.76

Weight (kDa)

6.74

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	2 cut(s)	54, 94
AjnI	CCWGG	1 cut(s)	127
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	3 cut(s)	86, 112, 251
AluI	AGCT	3 cut(s)	86, 112, 251
Alw21I	GWGCWC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	2 cut(s)	86, 458
AspS9I	GGNCC	1 cut(s)	359
AxyI	CCTNAGG	1 cut(s)	441
BaeI	ACNNNNGTAYC	2 cut(s)	395, 428
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	2 cut(s)	239, 392
BciT130I	CCWGG	1 cut(s)	129
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	2 cut(s)	387, 456
BisI	GCNGC	2 cut(s)	87, 459
BlsI	GCNGC	2 cut(s)	88, 460
Bme1390I	CCNGG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	1 cut(s)	129
BmrI	ACTGGG	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	12, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	181
Bse21I	CCTNAGG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	12, 128
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	7 cut(s)	30, 99, 126, 127, 279, 354, 455
BseNI	ACTGG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	73
BseYI	CCCAGC	2 cut(s)	118, 356
BshFI	GGCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	114
BslFI	GGGAC	2 cut(s)	124, 397
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmFI	GGGAC	2 cut(s)	124, 397
BsnI	GGCC	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	284
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	7 cut(s)	31, 100, 126, 127, 280, 355, 454
BspLI	GGNNCC	1 cut(s)	217
BspMAI	CTGCAG	2 cut(s)	391, 460
BspPI	GGATC	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	12, 128
BssMI	GATC	1 cut(s)	284
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	411
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	7 cut(s)	39, 108, 113, 135, 288, 363, 441
BstENI	CCTNNNNNAGG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	284
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 458
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	2 cut(s)	387, 456
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
Bsu36I	CCTNAGG	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	361
BtsI	GCAGTG	2 cut(s)	185, 396
BtsIMutI	CAGTG	3 cut(s)	105, 185, 396
Cac8I	GCNNGC	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	359
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	404
CviAII	CATG	2 cut(s)	20, 428
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	7 cut(s)	39, 108, 113, 135, 288, 363, 441
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	112
Eco81I	CCTNAGG	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	112
EcoNI	CCTNNNNNAGG	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	23, 431
FaiI	YATR	4 cut(s)	8, 21, 29, 429
FaqI	GGGAC	2 cut(s)	124, 397
FatI	CATG	2 cut(s)	19, 427
Fnu4HI	GCNGC	2 cut(s)	87, 459
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	87, 459
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	2 cut(s)	87, 459
GsaI	CCCAGC	2 cut(s)	122, 360
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	361
HgaI	GACGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	23, 431
HincII	GTYRAC	1 cut(s)	377
HindII	GTYRAC	1 cut(s)	377
HinfI	GANTC	3 cut(s)	41, 137, 373
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	5 cut(s)	40, 67, 136, 235, 289
Hpy188III	TCNNGA	1 cut(s)	213
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	1 cut(s)	411
HpyCH4V	TGCA	3 cut(s)	389, 427, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 458
HpyF3I	CTNAG	7 cut(s)	39, 108, 113, 135, 288, 363, 441
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	23, 431
Kzo9I	GATC	1 cut(s)	284
LmnI	GCTCC	5 cut(s)	16, 83, 215, 248, 457
Lsp1109I	GCAGC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	1 cut(s)	286
MboI	GATC	1 cut(s)	284
MboII	GAAGA	1 cut(s)	445
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	114
MlyI	GAGTC	3 cut(s)	50, 146, 382
MnlI	CCTC	8 cut(s)	73, 107, 160, 214, 216, 283, 323, 450
MseI	TTAA	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	124, 458
NdeII	GATC	1 cut(s)	284
NlaIII	CATG	2 cut(s)	23, 431
NlaIV	GGNNCC	1 cut(s)	217
PkrI	GCNGC	2 cut(s)	88, 460
PleI	GAGTC	3 cut(s)	49, 145, 381
PpsI	GAGTC	3 cut(s)	49, 145, 381
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	127
PspFI	CCCAGC	2 cut(s)	118, 356
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	1 cut(s)	359
PstI	CTGCAG	2 cut(s)	391, 460
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
SacI	GAGCTC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	2 cut(s)	87, 459
Sau3AI	GATC	1 cut(s)	284
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	3 cut(s)	50, 146, 382
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	9 cut(s)	74, 88, 99, 114, 253, 310, 334, 352, 447
SfcI	CTRYAG	2 cut(s)	387, 456
SspMI	CTAG	1 cut(s)	327
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	411
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	3 cut(s)	112, 192, 396
TseI	GCWGC	2 cut(s)	86, 458
TspRI	CASTG	3 cut(s)	112, 192, 396
XagI	CCTNNNNNAGG	1 cut(s)	67
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.