Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Forward (+)

2974641 .. 2978582

Gene Structure 3942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g05630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTCTATGTCCTTGGAGCATGATTACATAGGCTTATCAGAGTCCATGGAAGCCTCTGACAAGGGAGGAGCTGCAGCTTGGAACCTCAAAGCCACTGAGCTCAGGCTGGGCTTGCCTGGCTCTGAGTCCCCTAAGAGAGATAGTGTGGAGGACAAAACTGGGTTTTCACTTAAACCCTGTGTGTCTGGAGCCAAGAGGGTGTTCTCTGACGCCATTGATGGAGCTTCTGGGAAGTGGGTTTTCTCTGGGAGTGGTGGATCTGAAGCTGAGTTGGGTAAAGGTGGTAGCTTGGTATCTCCTAGAGGTGTTAATGGTGGCAAAGGTCTTGCTGGGTCTGAGTGTAAAAGTCAACAAATCTCTGCTGTGAAAGATGGGGTTTTACAACAGTCTCCAAACCCGTTGCATGAGAAGAAGCCTCAGGTTTCTGCTCCTGCTGCAAAGGCTCAGGTTGTTGGATGGCCACCAATTCGTTCATTCCGGAAGAATTCAATGGCATCCATTCCTTCCAAAAAGGATGATGATGCAGAAGGCAAGATGGGAGCAGGGTGTCTTTATATTAAGGTCAGCATGGATGGTGCACCATACCTGAGGAAAGTTGATCTCAAAACCTATGGCAGCTATGTGGATCTATCATTAGCTTTGGAAAAGATGTTCAGCTGCTTTACAATTGGTCAATGTGGCCCACATGGAGTTTCAAGTCAAGATGGAATGAGCGAGAGTCGATTAATGGATCTTCTCCATGGTGCTGAATACGTCCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTCCCCTGGCAAATGTTCACCGACTCGTGTAGAAGGATGAGGATTATGAAGAGTTCAGAAGCTATAGGGCTAGCCCCAAGGGCCATGCAGAAGTGCAAAAATAGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

304

Amino Acids

32.36

Weight (kDa)

8.07

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	31 - 294	9.2e-89	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	477
AclWI	GGATC	3 cut(s)	265, 633, 738
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	1 cut(s)	484
AcuI	CTGAAG	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	489, 696
AjnI	CCWGG	2 cut(s)	115, 806
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AloI	GAACNNNNNNTCC	2 cut(s)	635, 667
Alw21I	GWGCWC	2 cut(s)	102, 580
Alw26I	GTCTC	1 cut(s)	393
Alw44I	GTGCAC	1 cut(s)	576
AlwI	GGATC	3 cut(s)	265, 633, 738
Aor13HI	TCCGGA	1 cut(s)	477
AoxI	GGCC	3 cut(s)	458, 679, 882
ApaLI	GTGCAC	1 cut(s)	576
ApeKI	GCWGC	5 cut(s)	71, 74, 434, 615, 657
ApoI	RAATTY	1 cut(s)	484
AseI	ATTAAT	1 cut(s)	725
AspS9I	GGNCC	2 cut(s)	680, 882
AsuHPI	GGTGA	4 cut(s)	751, 791, 809, 811
AsuNHI	GCTAGC	1 cut(s)	871
AxyI	CCTNAGG	2 cut(s)	417, 587
BaeGI	GKGCMC	1 cut(s)	580
BalI	TGGCCA	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	102
BauI	CACGAG	1 cut(s)	826
BbsI	GAAGAC	1 cut(s)	774
Bbv12I	GWGCWC	2 cut(s)	102, 580
BbvI	GCAGC	5 cut(s)	58, 86, 421, 627, 644
BccI	CCATC	7 cut(s)	212, 365, 450, 529, 566, 698, 770
BciT130I	CCWGG	2 cut(s)	117, 808
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	3 cut(s)	300, 791, 872
BfmI	CTRYAG	2 cut(s)	72, 864
BglI	GCCNNNNNGGC	1 cut(s)	881
BisI	GCNGC	5 cut(s)	72, 75, 435, 616, 658
BlsI	GCNGC	5 cut(s)	73, 76, 436, 617, 659
Bme1390I	CCNGG	2 cut(s)	117, 808
BmgT120I	GGNCC	2 cut(s)	680, 882
BmiI	GGNNCC	2 cut(s)	83, 190
BmrFI	CCNGG	2 cut(s)	117, 808
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	3 cut(s)	503, 511, 777
BmtI	GCTAGC	1 cut(s)	875
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	774
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	2 cut(s)	101, 444
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	5 cut(s)	12, 45, 739, 806, 878
BsaWI	WCCGGW	1 cut(s)	477
Bse1I	ACTGG	1 cut(s)	163
Bse21I	CCTNAGG	2 cut(s)	417, 587
BseAI	TCCGGA	1 cut(s)	477
BseBI	CCWGG	2 cut(s)	117, 808
BseDI	CCNNGG	5 cut(s)	12, 45, 739, 806, 878
BseGI	GGATG	7 cut(s)	461, 494, 520, 577, 781, 792, 843
BseMII	CTCAG	8 cut(s)	87, 114, 115, 258, 327, 431, 458, 578
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	580
BseXI	GCAGC	5 cut(s)	58, 86, 421, 627, 644
BseYI	CCCAGC	2 cut(s)	106, 329
BshFI	GGCC	3 cut(s)	460, 681, 884
BsiHKAI	GWGCWC	2 cut(s)	102, 580
BsiSI	CCGG	1 cut(s)	478
BslFI	GGGAC	2 cut(s)	112, 788
BsmAI	GTCTC	1 cut(s)	393
BsmFI	GGGAC	2 cut(s)	112, 788
BsnI	GGCC	3 cut(s)	460, 681, 884
Bsp1286I	GDGCHC	2 cut(s)	102, 580
Bsp13I	TCCGGA	1 cut(s)	477
Bsp143I	GATC	4 cut(s)	257, 598, 625, 730
Bsp19I	CCATGG	2 cut(s)	45, 739
BspANI	GGCC	3 cut(s)	460, 681, 884
BspCNI	CTCAG	8 cut(s)	88, 114, 115, 259, 328, 430, 457, 579
BspEI	TCCGGA	1 cut(s)	477
BspLI	GGNNCC	2 cut(s)	83, 190
BspMAI	CTGCAG	1 cut(s)	76
BspOI	GCTAGC	1 cut(s)	875
BspPI	GGATC	3 cut(s)	265, 633, 738
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	5 cut(s)	12, 45, 739, 806, 878
BssMI	GATC	4 cut(s)	257, 598, 625, 730
BssNI	GRCGYC	1 cut(s)	210
BssSI	CACGAG	1 cut(s)	826
BssT1I	CCWWGG	4 cut(s)	12, 45, 739, 878
Bst2BI	CACGAG	1 cut(s)	826
Bst2UI	CCWGG	2 cut(s)	117, 808
Bst4CI	ACNGT	1 cut(s)	387
Bst6I	CTCTTC	1 cut(s)	845
BstACI	GRCGYC	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	113, 873
BstDEI	CTNAG	9 cut(s)	96, 101, 123, 132, 267, 336, 417, 444, 587
BstDSI	CCRYGG	2 cut(s)	45, 739
BstF5I	GGATG	7 cut(s)	461, 494, 520, 577, 781, 792, 843
BstKTI	GATC	4 cut(s)	260, 601, 628, 733
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	4 cut(s)	257, 598, 625, 730
BstMWI	GCNNNNNNNGC	5 cut(s)	112, 117, 434, 440, 881
BstNI	CCWGG	2 cut(s)	117, 808
BstSCI	CCNGG	2 cut(s)	115, 806
BstSFI	CTRYAG	2 cut(s)	72, 864
BstSLI	GKGCMC	1 cut(s)	580
BstV1I	GCAGC	5 cut(s)	58, 86, 421, 627, 644
BstV2I	GAAGAC	1 cut(s)	774
BstX2I	RGATCY	3 cut(s)	257, 625, 730
BstYI	RGATCY	3 cut(s)	257, 625, 730
Bsu36I	CCTNAGG	2 cut(s)	417, 587
BsuRI	GGCC	3 cut(s)	460, 681, 884
BtgI	CCRYGG	2 cut(s)	45, 739
BtsCI	GGATG	7 cut(s)	461, 494, 520, 577, 781, 792, 843
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	2 cut(s)	113, 873
Cfr13I	GGNCC	2 cut(s)	680, 882
CseI	GACGC	1 cut(s)	218
CviAII	CATG	7 cut(s)	20, 46, 404, 568, 686, 740, 886
DdeI	CTNAG	9 cut(s)	96, 101, 123, 132, 267, 336, 417, 444, 587
DpnI	GATC	4 cut(s)	259, 600, 627, 732
DpnII	GATC	4 cut(s)	257, 598, 625, 730
EaeI	YGGCCR	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	845
EarI	CTCTTC	1 cut(s)	845
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	4 cut(s)	12, 45, 739, 878
Eco24I	GRGCYC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	282
Eco81I	CCTNAGG	2 cut(s)	417, 587
EcoICRI	GAGCTC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	484
EcoRII	CCWGG	2 cut(s)	115, 806
EcoT14I	CCWWGG	4 cut(s)	12, 45, 739, 878
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	4 cut(s)	12, 45, 739, 878
FaeI	CATG	7 cut(s)	23, 49, 407, 571, 689, 743, 889
FaqI	GGGAC	2 cut(s)	112, 788
FatI	CATG	7 cut(s)	19, 45, 403, 567, 685, 739, 885
Fnu4HI	GCNGC	5 cut(s)	72, 75, 435, 616, 658
FokI	GGATG	7 cut(s)	468, 481, 527, 584, 788, 799, 850
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	5 cut(s)	72, 75, 435, 616, 658
FspBI	CTAG	3 cut(s)	300, 791, 872
GluI	GCNGC	5 cut(s)	72, 75, 435, 616, 658
GsaI	CCCAGC	2 cut(s)	110, 333
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	3 cut(s)	460, 681, 884
HapII	CCGG	1 cut(s)	478
HgaI	GACGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	7 cut(s)	23, 49, 407, 571, 689, 743, 889
HincII	GTYRAC	1 cut(s)	350
HindII	GTYRAC	1 cut(s)	350
HinfI	GANTC	4 cut(s)	41, 125, 718, 824
HpaII	CCGG	1 cut(s)	478
HphI	GGTGA	4 cut(s)	751, 791, 809, 811
Hpy166II	GTNNAC	3 cut(s)	350, 578, 819
Hpy188I	TCNGA	7 cut(s)	40, 58, 124, 208, 262, 337, 859
Hpy188III	TCNNGA	3 cut(s)	186, 478, 701
Hpy8I	GTNNAC	3 cut(s)	350, 578, 819
HpyAV	CCTTC	3 cut(s)	513, 521, 828
HpyCH4III	ACNGT	1 cut(s)	387
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	7 cut(s)	74, 403, 437, 524, 578, 889, 897
HpyF10VI	GCNNNNNNNGC	5 cut(s)	112, 117, 434, 440, 881
HpyF3I	CTNAG	9 cut(s)	96, 101, 123, 132, 267, 336, 417, 444, 587
HpySE526I	ACGT	1 cut(s)	753
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	7 cut(s)	23, 49, 407, 571, 689, 743, 889
Kpn2I	TCCGGA	1 cut(s)	477
Kzo9I	GATC	4 cut(s)	257, 598, 625, 730
LmnI	GCTCC	6 cut(s)	16, 68, 188, 221, 433, 539
Lsp1109I	GCAGC	5 cut(s)	58, 86, 421, 627, 644
LweI	GCATC	3 cut(s)	503, 511, 777
MaeI	CTAG	3 cut(s)	300, 791, 872
MaeII	ACGT	1 cut(s)	753
MalI	GATC	4 cut(s)	259, 600, 627, 732
MboI	GATC	4 cut(s)	257, 598, 625, 730
MboII	GAAGA	5 cut(s)	421, 493, 725, 779, 862
MfeI	CAATTG	1 cut(s)	666
MflI	RGATCY	3 cut(s)	257, 625, 730
MhlI	GDGCHC	2 cut(s)	102, 580
MlsI	TGGCCA	1 cut(s)	460
MluCI	AATT	4 cut(s)	465, 484, 666, 907
MluNI	TGGCCA	1 cut(s)	460
MlyI	GAGTC	4 cut(s)	50, 134, 727, 818
MmeI	TCCRAC	1 cut(s)	433
Mox20I	TGGCCA	1 cut(s)	460
MroI	TCCGGA	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	460
MseI	TTAA	4 cut(s)	171, 309, 558, 725
Msp20I	TGGCCA	1 cut(s)	460
MspA1I	CMGCKG	1 cut(s)	657
MspI	CCGG	1 cut(s)	478
MspR9I	CCNGG	2 cut(s)	117, 808
MunI	CAATTG	1 cut(s)	666
MvaI	CCWGG	2 cut(s)	117, 808
MwoI	GCNNNNNNNGC	5 cut(s)	112, 117, 434, 440, 881
NcoI	CCATGG	2 cut(s)	45, 739
NdeII	GATC	4 cut(s)	257, 598, 625, 730
NheI	GCTAGC	1 cut(s)	871
NlaIII	CATG	7 cut(s)	23, 49, 407, 571, 689, 743, 889
NlaIV	GGNNCC	2 cut(s)	83, 190
PkrI	GCNGC	5 cut(s)	73, 76, 436, 617, 659
PleI	GAGTC	4 cut(s)	49, 133, 726, 818
PpsI	GAGTC	4 cut(s)	49, 133, 726, 818
PshBI	ATTAAT	1 cut(s)	725
Psp124BI	GAGCTC	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	115, 806
PspFI	CCCAGC	2 cut(s)	106, 329
PspGI	CCWGG	2 cut(s)	115, 806
PspN4I	GGNNCC	2 cut(s)	83, 190
PspPI	GGNCC	2 cut(s)	680, 882
PstI	CTGCAG	1 cut(s)	76
PsuI	RGATCY	3 cut(s)	257, 625, 730
PvuII	CAGCTG	1 cut(s)	657
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	4 cut(s)	171, 309, 558, 725
SatI	GCNGC	5 cut(s)	72, 75, 435, 616, 658
Sau3AI	GATC	4 cut(s)	257, 598, 625, 730
Sau96I	GGNCC	2 cut(s)	680, 882
SchI	GAGTC	4 cut(s)	50, 134, 727, 818
ScrFI	CCNGG	2 cut(s)	117, 808
SduI	GDGCHC	2 cut(s)	102, 580
SfaNI	GCATC	3 cut(s)	503, 511, 777
SfcI	CTRYAG	2 cut(s)	72, 864
Sse9I	AATT	4 cut(s)	465, 484, 666, 907
SspMI	CTAG	3 cut(s)	300, 791, 872
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	115, 806
StyI	CCWWGG	4 cut(s)	12, 45, 739, 878
TaaI	ACNGT	1 cut(s)	387
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	1 cut(s)	721
TasI	AATT	4 cut(s)	465, 484, 666, 907
Tru1I	TTAA	4 cut(s)	171, 309, 558, 725
Tru9I	TTAA	4 cut(s)	171, 309, 558, 725
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	5 cut(s)	71, 74, 434, 615, 657
TspDTI	ATGAA	3 cut(s)	462, 780, 863
TspRI	CASTG	1 cut(s)	100
VneI	GTGCAC	1 cut(s)	576
VspI	ATTAAT	1 cut(s)	725
XapI	RAATTY	1 cut(s)	484
XspI	CTAG	3 cut(s)	300, 791, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.