Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G29080 |
| fragaria_vesca | FvH4_1g05630 FvH4_6g31930 |
| malus_domestica | MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1 |
| prunus_persica | Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1 |
| pyrus_communis | pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740 |
| rosa_chinensis | RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301 |
| rosa_laevigata | RLG00000016198 RLG00000019806 |
| rosa_multiflora | Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008 |
| rosa_roxburghii | Rroxscaffold_2G00105480 Rroxscaffold_2G00150310 |
| rosa_rugosa | Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900 |
| rosa_samantha | Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100 |
| rosa_wichuraiana | Rw2G004900 Rw2G032950 Rw2G033210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 292 |
| AcyI | GRCGYC | 1 cut(s) | 237 |
| AfaI | GTAC | 1 cut(s) | 405 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 69 |
| AgsI | TTSAA | 2 cut(s) | 54, 94 |
| AjnI | CCWGG | 1 cut(s) | 127 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 212, 244 |
| AluBI | AGCT | 3 cut(s) | 86, 112, 251 |
| AluI | AGCT | 3 cut(s) | 86, 112, 251 |
| Alw21I | GWGCWC | 1 cut(s) | 114 |
| AlwI | GGATC | 1 cut(s) | 292 |
| AoxI | GGCC | 1 cut(s) | 359 |
| ApeKI | GCWGC | 2 cut(s) | 86, 458 |
| AspS9I | GGNCC | 1 cut(s) | 359 |
| AxyI | CCTNAGG | 1 cut(s) | 441 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 395, 428 |
| BanII | GRGCYC | 1 cut(s) | 114 |
| Bbv12I | GWGCWC | 1 cut(s) | 114 |
| BbvI | GCAGC | 1 cut(s) | 73 |
| BccI | CCATC | 2 cut(s) | 239, 392 |
| BciT130I | CCWGG | 1 cut(s) | 129 |
| BfaI | CTAG | 1 cut(s) | 327 |
| BfmI | CTRYAG | 2 cut(s) | 387, 456 |
| BisI | GCNGC | 2 cut(s) | 87, 459 |
| BlsI | GCNGC | 2 cut(s) | 88, 460 |
| Bme1390I | CCNGG | 1 cut(s) | 129 |
| BmgT120I | GGNCC | 1 cut(s) | 359 |
| BmiI | GGNNCC | 1 cut(s) | 217 |
| BmrFI | CCNGG | 1 cut(s) | 129 |
| BmrI | ACTGGG | 1 cut(s) | 186 |
| BmuI | ACTGGG | 1 cut(s) | 186 |
| BpmI | CTGGAG | 1 cut(s) | 234 |
| Bpu10I | CCTNAGC | 1 cut(s) | 113 |
| BsaHI | GRCGYC | 1 cut(s) | 237 |
| BsaJI | CCNNGG | 2 cut(s) | 12, 128 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 69 |
| Bse1I | ACTGG | 1 cut(s) | 181 |
| Bse21I | CCTNAGG | 1 cut(s) | 441 |
| BseBI | CCWGG | 1 cut(s) | 129 |
| BseDI | CCNNGG | 2 cut(s) | 12, 128 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 69 |
| BseMII | CTCAG | 7 cut(s) | 30, 99, 126, 127, 279, 354, 455 |
| BseNI | ACTGG | 1 cut(s) | 181 |
| BseXI | GCAGC | 1 cut(s) | 73 |
| BseYI | CCCAGC | 2 cut(s) | 118, 356 |
| BshFI | GGCC | 1 cut(s) | 361 |
| BsiHKAI | GWGCWC | 1 cut(s) | 114 |
| BslFI | GGGAC | 2 cut(s) | 124, 397 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 69 |
| BsmFI | GGGAC | 2 cut(s) | 124, 397 |
| BsnI | GGCC | 1 cut(s) | 361 |
| Bsp1286I | GDGCHC | 1 cut(s) | 114 |
| Bsp143I | GATC | 1 cut(s) | 284 |
| BspANI | GGCC | 1 cut(s) | 361 |
| BspCNI | CTCAG | 7 cut(s) | 31, 100, 126, 127, 280, 355, 454 |
| BspLI | GGNNCC | 1 cut(s) | 217 |
| BspMAI | CTGCAG | 2 cut(s) | 391, 460 |
| BspPI | GGATC | 1 cut(s) | 292 |
| BsrI | ACTGG | 1 cut(s) | 181 |
| BssECI | CCNNGG | 2 cut(s) | 12, 128 |
| BssMI | GATC | 1 cut(s) | 284 |
| BssNI | GRCGYC | 1 cut(s) | 237 |
| BssT1I | CCWWGG | 1 cut(s) | 12 |
| Bst2UI | CCWGG | 1 cut(s) | 129 |
| Bst4CI | ACNGT | 1 cut(s) | 411 |
| BstACI | GRCGYC | 1 cut(s) | 237 |
| BstC8I | GCNNGC | 1 cut(s) | 125 |
| BstDEI | CTNAG | 7 cut(s) | 39, 108, 113, 135, 288, 363, 441 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 67 |
| BstKTI | GATC | 1 cut(s) | 287 |
| BstMBI | GATC | 1 cut(s) | 284 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 124, 458 |
| BstNI | CCWGG | 1 cut(s) | 129 |
| BstSCI | CCNGG | 1 cut(s) | 127 |
| BstSFI | CTRYAG | 2 cut(s) | 387, 456 |
| BstV1I | GCAGC | 1 cut(s) | 73 |
| BstX2I | RGATCY | 1 cut(s) | 284 |
| BstYI | RGATCY | 1 cut(s) | 284 |
| Bsu36I | CCTNAGG | 1 cut(s) | 441 |
| BsuRI | GGCC | 1 cut(s) | 361 |
| BtsI | GCAGTG | 2 cut(s) | 185, 396 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 185, 396 |
| Cac8I | GCNNGC | 1 cut(s) | 125 |
| Cfr13I | GGNCC | 1 cut(s) | 359 |
| CseI | GACGC | 1 cut(s) | 245 |
| Csp6I | GTAC | 1 cut(s) | 404 |
| CviAII | CATG | 2 cut(s) | 20, 428 |
| CviQI | GTAC | 1 cut(s) | 404 |
| DdeI | CTNAG | 7 cut(s) | 39, 108, 113, 135, 288, 363, 441 |
| DpnI | GATC | 1 cut(s) | 286 |
| DpnII | GATC | 1 cut(s) | 284 |
| Ecl136II | GAGCTC | 1 cut(s) | 112 |
| Eco130I | CCWWGG | 1 cut(s) | 12 |
| Eco24I | GRGCYC | 1 cut(s) | 114 |
| Eco53kI | GAGCTC | 1 cut(s) | 112 |
| Eco81I | CCTNAGG | 1 cut(s) | 441 |
| EcoICRI | GAGCTC | 1 cut(s) | 112 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 127 |
| EcoT14I | CCWWGG | 1 cut(s) | 12 |
| EcoT38I | GRGCYC | 1 cut(s) | 114 |
| ErhI | CCWWGG | 1 cut(s) | 12 |
| FaeI | CATG | 2 cut(s) | 23, 431 |
| FaiI | YATR | 4 cut(s) | 8, 21, 29, 429 |
| FaqI | GGGAC | 2 cut(s) | 124, 397 |
| FatI | CATG | 2 cut(s) | 19, 427 |
| Fnu4HI | GCNGC | 2 cut(s) | 87, 459 |
| FriOI | GRGCYC | 1 cut(s) | 114 |
| Fsp4HI | GCNGC | 2 cut(s) | 87, 459 |
| FspBI | CTAG | 1 cut(s) | 327 |
| GluI | GCNGC | 2 cut(s) | 87, 459 |
| GsaI | CCCAGC | 2 cut(s) | 122, 360 |
| GsuI | CTGGAG | 1 cut(s) | 234 |
| HaeIII | GGCC | 1 cut(s) | 361 |
| HgaI | GACGC | 1 cut(s) | 245 |
| Hin1I | GRCGYC | 1 cut(s) | 237 |
| Hin1II | CATG | 2 cut(s) | 23, 431 |
| HincII | GTYRAC | 1 cut(s) | 377 |
| HindII | GTYRAC | 1 cut(s) | 377 |
| HinfI | GANTC | 2 cut(s) | 41, 137 |
| Hpy166II | GTNNAC | 1 cut(s) | 377 |
| Hpy188I | TCNGA | 5 cut(s) | 40, 67, 136, 235, 289 |
| Hpy188III | TCNNGA | 1 cut(s) | 213 |
| Hpy8I | GTNNAC | 1 cut(s) | 377 |
| HpyAV | CCTTC | 1 cut(s) | 60 |
| HpyCH4III | ACNGT | 1 cut(s) | 411 |
| HpyCH4V | TGCA | 3 cut(s) | 389, 427, 458 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 124, 458 |
| HpyF3I | CTNAG | 7 cut(s) | 39, 108, 113, 135, 288, 363, 441 |
| Hsp92I | GRCGYC | 1 cut(s) | 237 |
| Hsp92II | CATG | 2 cut(s) | 23, 431 |
| Kzo9I | GATC | 1 cut(s) | 284 |
| LmnI | GCTCC | 5 cut(s) | 16, 83, 215, 248, 457 |
| Lsp1109I | GCAGC | 1 cut(s) | 73 |
| MaeI | CTAG | 1 cut(s) | 327 |
| MaeIII | GTNAC | 1 cut(s) | 311 |
| MalI | GATC | 1 cut(s) | 286 |
| MboI | GATC | 1 cut(s) | 284 |
| MboII | GAAGA | 1 cut(s) | 445 |
| MflI | RGATCY | 1 cut(s) | 284 |
| MhlI | GDGCHC | 1 cut(s) | 114 |
| MlyI | GAGTC | 2 cut(s) | 50, 146 |
| MnlI | CCTC | 8 cut(s) | 73, 107, 160, 214, 216, 283, 323, 450 |
| MseI | TTAA | 1 cut(s) | 336 |
| MspR9I | CCNGG | 1 cut(s) | 129 |
| MvaI | CCWGG | 1 cut(s) | 129 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 124, 458 |
| NdeII | GATC | 1 cut(s) | 284 |
| NlaIII | CATG | 2 cut(s) | 23, 431 |
| NlaIV | GGNNCC | 1 cut(s) | 217 |
| PkrI | GCNGC | 2 cut(s) | 88, 460 |
| PleI | GAGTC | 2 cut(s) | 49, 145 |
| PpsI | GAGTC | 2 cut(s) | 49, 145 |
| Psp124BI | GAGCTC | 1 cut(s) | 114 |
| Psp6I | CCWGG | 1 cut(s) | 127 |
| PspFI | CCCAGC | 2 cut(s) | 118, 356 |
| PspGI | CCWGG | 1 cut(s) | 127 |
| PspN4I | GGNNCC | 1 cut(s) | 217 |
| PspPI | GGNCC | 1 cut(s) | 359 |
| PstI | CTGCAG | 2 cut(s) | 391, 460 |
| PsuI | RGATCY | 1 cut(s) | 284 |
| RsaI | GTAC | 1 cut(s) | 405 |
| RsaNI | GTAC | 1 cut(s) | 404 |
| SacI | GAGCTC | 1 cut(s) | 114 |
| SaqAI | TTAA | 1 cut(s) | 336 |
| SatI | GCNGC | 2 cut(s) | 87, 459 |
| Sau3AI | GATC | 1 cut(s) | 284 |
| Sau96I | GGNCC | 1 cut(s) | 359 |
| SchI | GAGTC | 2 cut(s) | 50, 146 |
| ScrFI | CCNGG | 1 cut(s) | 129 |
| SduI | GDGCHC | 1 cut(s) | 114 |
| SetI | ASST | 9 cut(s) | 74, 88, 99, 114, 253, 310, 334, 352, 447 |
| SfcI | CTRYAG | 2 cut(s) | 387, 456 |
| SspMI | CTAG | 1 cut(s) | 327 |
| SstI | GAGCTC | 1 cut(s) | 114 |
| StyD4I | CCNGG | 1 cut(s) | 127 |
| StyI | CCWWGG | 1 cut(s) | 12 |
| TaaI | ACNGT | 1 cut(s) | 411 |
| Tru1I | TTAA | 1 cut(s) | 336 |
| Tru9I | TTAA | 1 cut(s) | 336 |
| TscAI | CASTG | 3 cut(s) | 112, 192, 396 |
| TseI | GCWGC | 2 cut(s) | 86, 458 |
| TspRI | CASTG | 3 cut(s) | 112, 192, 396 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 67 |
| XspI | CTAG | 1 cut(s) | 327 |