Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Forward (+)

60558409 .. 60558957

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG406600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCTGTACCACTGGAACATGACTACATAGGCTTAGCAGAGACTTCTTCAATGGAAAGAAGCTCTGATAGGATTTCCTCTTCCTCCTCCTCTGCCCACTCAACTACAGAGGATGTCAAGACCTCTGCTTTCAACCTCAAGGAGACTGAGCTGAGGCTTGGCTTGCCTGGCTCTCACTCTCCTGAGAGAAAACCAGGAATTGCTCTTTCAATTTTTCGCAAAGATTTGGAGGACAATAAGCAAAATGGATATCCTCTAAACCCTTCAAAAACCAACCCTGTGTCTGGTGCTAAGAGGGGTTTCTCTGATGCCATTGATGGGTCTTCTGAGAAATGGGTTTTTCGTATGAGTAATGGATCTGAAGCTGATAAAGGAGCAGTCTTGTTCTCTCCTAAAGGTGAGAGTAATGCTAAAACACAACAGCTATGTGTGTCTGGACAAACCAAGAAAGAGGTTGCTGCTTCTGTTGTTCCTCAGTCACCAAAGCCAGTCCAAGAGAAGCAGAAGTCTCAGGTCTCTGAGCATGTTAGTCCTCCTGCTGCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

182

Amino Acids

19.52

Weight (kDa)

8.61

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	2 cut(s)	284, 318
AgsI	TTSAA	4 cut(s)	51, 133, 210, 267
AjnI	CCWGG	2 cut(s)	166, 193
AluBI	AGCT	4 cut(s)	63, 151, 365, 424
AluI	AGCT	4 cut(s)	63, 151, 365, 424
Alw26I	GTCTC	4 cut(s)	35, 137, 513, 520
AlwI	GGATC	1 cut(s)	364
ApeKI	GCWGC	2 cut(s)	458, 539
AsuHPI	GGTGA	2 cut(s)	410, 471
BbsI	GAAGAC	1 cut(s)	315
BbvCI	CCTCAGC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	445, 526
BccI	CCATC	1 cut(s)	311
BciT130I	CCWGG	2 cut(s)	168, 195
BcoDI	GTCTC	4 cut(s)	35, 137, 513, 520
BfmI	CTRYAG	1 cut(s)	105
BisI	GCNGC	2 cut(s)	459, 540
BlpI	GCTNAGC	1 cut(s)	34
BlsI	GCNGC	2 cut(s)	460, 541
Bme1390I	CCNGG	2 cut(s)	168, 195
BmrFI	CCNGG	2 cut(s)	168, 195
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	152
Bpu1102I	GCTNAGC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 318
Bse1I	ACTGG	2 cut(s)	18, 488
BseBI	CCWGG	2 cut(s)	168, 195
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	284, 318
BseMII	CTCAG	7 cut(s)	138, 143, 174, 318, 488, 510, 524
BseNI	ACTGG	2 cut(s)	18, 488
BseRI	GAGGAG	2 cut(s)	76, 79
BseXI	GCAGC	2 cut(s)	445, 526
BslI	CCNNNNNNNGG	2 cut(s)	284, 318
BsmAI	GTCTC	4 cut(s)	35, 137, 513, 520
Bso31I	GGTCTC	1 cut(s)	520
Bsp143I	GATC	1 cut(s)	356
Bsp1720I	GCTNAGC	1 cut(s)	34
BspCNI	CTCAG	7 cut(s)	139, 144, 175, 319, 487, 511, 523
BspPI	GGATC	1 cut(s)	364
BspTNI	GGTCTC	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	18, 488
BssMI	GATC	1 cut(s)	356
Bst2UI	CCWGG	2 cut(s)	168, 195
Bst6I	CTCTTC	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	9 cut(s)	34, 147, 152, 183, 291, 327, 474, 510, 519
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	359
BstMAI	GTCTC	4 cut(s)	35, 137, 513, 520
BstMBI	GATC	1 cut(s)	356
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 168
BstNI	CCWGG	2 cut(s)	168, 195
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	166, 193
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	445, 526
BstV2I	GAAGAC	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	8
CviAII	CATG	2 cut(s)	20, 524
CviJI	RGCY	9 cut(s)	33, 63, 151, 157, 162, 171, 365, 424, 487
CviKI_1	RGCY	9 cut(s)	33, 63, 151, 157, 162, 171, 365, 424, 487
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	9 cut(s)	34, 147, 152, 183, 291, 327, 474, 510, 519
DpnI	GATC	1 cut(s)	358
DpnII	GATC	1 cut(s)	356
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	520
Eco32I	GATATC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	381
EcoRII	CCWGG	2 cut(s)	166, 193
EcoRV	GATATC	1 cut(s)	251
FaeI	CATG	2 cut(s)	23, 527
FaiI	YATR	5 cut(s)	21, 29, 347, 427, 525
FatI	CATG	2 cut(s)	19, 523
Fnu4HI	GCNGC	2 cut(s)	459, 540
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	459, 540
GluI	GCNGC	2 cut(s)	459, 540
Hin1II	CATG	2 cut(s)	23, 527
HphI	GGTGA	2 cut(s)	410, 471
Hpy188I	TCNGA	5 cut(s)	67, 307, 328, 361, 520
Hpy188III	TCNNGA	3 cut(s)	118, 182, 435
HpyAV	CCTTC	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 168
HpyF3I	CTNAG	9 cut(s)	34, 147, 152, 183, 291, 327, 474, 510, 519
Hsp92II	CATG	2 cut(s)	23, 527
Kzo9I	GATC	1 cut(s)	356
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	2 cut(s)	445, 526
LweI	GCATC	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	477
MalI	GATC	1 cut(s)	358
MboI	GATC	1 cut(s)	356
MboII	GAAGA	3 cut(s)	39, 72, 315
MflI	RGATCY	1 cut(s)	356
MluCI	AATT	2 cut(s)	198, 210
MspR9I	CCNGG	2 cut(s)	168, 195
MvaI	CCWGG	2 cut(s)	168, 195
MwoI	GCNNNNNNNGC	2 cut(s)	163, 168
NdeII	GATC	1 cut(s)	356
NlaIII	CATG	2 cut(s)	23, 527
NmuCI	GTSAC	1 cut(s)	477
NspI	RCATGY	1 cut(s)	527
PkrI	GCNGC	2 cut(s)	460, 541
Psp6I	CCWGG	2 cut(s)	166, 193
PspGI	CCWGG	2 cut(s)	166, 193
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
SatI	GCNGC	2 cut(s)	459, 540
Sau3AI	GATC	1 cut(s)	356
ScrFI	CCNGG	2 cut(s)	168, 195
SetI	ASST	9 cut(s)	65, 125, 138, 153, 367, 400, 426, 456, 516
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	198, 210
StyD4I	CCNGG	2 cut(s)	166, 193
TasI	AATT	2 cut(s)	198, 210
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	477
TseI	GCWGC	2 cut(s)	458, 539
Tsp45I	GTSAC	1 cut(s)	477
TspRI	CASTG	1 cut(s)	18
XceI	RCATGY	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.