Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003380

Physical Location & Seq

Genomic Coordinates Reverse (-)

19999625 .. 20002918

Gene Structure 3294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G225600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTCTATGTCACTGGAGCATGATTACATAGGCTTATCAGAGTCTGCTTCTTCAATGGAAAGCTCTGACAAGTCTGCTGAGAGGGACAGAGGGACTGCTCTGAACCTCAAAGCCACTGAGCTGAGGCTGGGCTTGCCAGGCTCTGAGTCCCCAGACAGAGATTGTGGTGGTGGGTTAGTGGAGGATAAGACTGGGTACTCAGTATGTGTGGTTAAAGGCTTGGTCTCTGGGGCCAAGAGGGGCTTCTCTGACGCCATTGATGGAGCTTCCGGGAAGTGGATTTTCTCTGGGAGTGGTGGATCTGAGGTTGATATGGGTAAAGGTGGTAACTTGCTCTCTCCCAGAGGTGTTAATGGTGGGAAAGCTCTTGCTGGGTCTGAGTCTAACAACCAACCAACAAGTTTAGCTGTCTCAGCCGTGAAAGATGGTGGACAACAGTCTCCAAAGCCATTGCATGAGAAGAAGCCCCAGGTTTCTGCTTCTGCTTCTGCAGCAAAGGCACAGGTTGTAGGATGGCCACCAATTCGTTCTTTCAGGAAGAATTCAATGGCTTCCGTTCCTCCGAGAAATGATGATGATGCAGAAGGCAAGATGGGACCAGGGTGTCTTTACGTTAAAGTCAGCATGGATGGTGCACCATACCTGAGGAAAGTCGATCTCAAAACATATGGCAGCTATGTGGAGTTATCTTTGGCGCTGGAAAAGATGTTTAGCTGCTTTACAATTGGTCAATGTGGCTCACATGGAGTTTCAAGAGATGGACTGAGCGAGAGCCGGTTAATGGATCTCCTAAATGGTGCTGAATATGTCCTCACCTATGAAGATAAGGATGGAGATTGGATGCTAGTTGGCGATGTTCCGTGGGAAATGTTCACTGACACATGCAAGAGGATGAGGATCATGAAGAGTTCAGAGGCTATAGGGCTAGCCCCAAGGGCCATGCAGAAGTGCAAAAAGAGTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

322

Amino Acids

34.05

Weight (kDa)

6.84

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29080
fragaria_vesca	FvH4_1g05630 FvH4_6g31930
malus_domestica	MD02G1057200.v1.1 MD09G1208000.v1.1 MD15G1191800.v1.1 MD17G1189100.v1.1
prunus_persica	Prupe.3G064200_v2.0.a1 Prupe.7G225600_v2.0.a1
pyrus_communis	pycom02g04630 pycom09g12420 pycom15g17170 pycom17g19740
rosa_chinensis	RchiOBHm_Chr2g0091261 RchiOBHm_Chr2g0139301
rosa_laevigata	RLG00000016198 RLG00000019806
rosa_multiflora	Rmu_sc0002270.1_g000025 Rmu_sc0002525.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105480 Rroxscaffold_2G00150310
rosa_rugosa	Rorug02G0015100 Rorug02G0015200 Rorug02G0356800 Rorug02G0356900
rosa_samantha	Rh2AG060800 Rh2AG406600 Rh2BG059500 Rh2BG417000 Rh2CG061400 Rh2CG392800 Rh2DG060100 Rh2DG426100
rosa_wichuraiana	Rw2G004900 Rw2G032950 Rw2G033210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	603
AclWI	GGATC	3 cut(s)	307, 792, 905
AcoI	YGGCCR	1 cut(s)	515
AcsI	RAATTY	1 cut(s)	541
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	276, 781
AgsI	TTSAA	3 cut(s)	54, 546, 753
AjnI	CCWGG	3 cut(s)	136, 468, 598
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	7 cut(s)	63, 121, 266, 365, 407, 675, 714
AluI	AGCT	7 cut(s)	63, 121, 266, 365, 407, 675, 714
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	3 cut(s)	229, 415, 444
Alw44I	GTGCAC	1 cut(s)	633
AlwI	GGATC	3 cut(s)	307, 792, 905
AlwNI	CAGNNNCTG	2 cut(s)	44, 143
AoxI	GGCC	3 cut(s)	231, 515, 936
ApaLI	GTGCAC	1 cut(s)	633
ApeKI	GCWGC	3 cut(s)	491, 672, 714
ApoI	RAATTY	1 cut(s)	541
AspLEI	GCGC	1 cut(s)	697
AspS9I	GGNCC	3 cut(s)	231, 596, 936
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	805
AsuNHI	GCTAGC	1 cut(s)	925
AvaII	GGWCC	1 cut(s)	596
AxyI	CCTNAGG	1 cut(s)	644
BaeGI	GKGCMC	1 cut(s)	637
BalI	TGGCCA	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	637
BbvCI	CCTCAGC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	503, 684, 701
BccI	CCATC	7 cut(s)	254, 419, 507, 586, 623, 752, 824
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	3 cut(s)	138, 470, 600
BcnI	CCSGG	1 cut(s)	271
BcoDI	GTCTC	3 cut(s)	229, 415, 444
BfaI	CTAG	2 cut(s)	845, 926
BfmI	CTRYAG	2 cut(s)	489, 918
BfoI	RGCGCY	1 cut(s)	698
BglI	GCCNNNNNGGC	1 cut(s)	935
BisI	GCNGC	3 cut(s)	492, 673, 715
BlsI	GCNGC	3 cut(s)	493, 674, 716
Bme1390I	CCNGG	4 cut(s)	138, 271, 470, 600
Bme18I	GGWCC	1 cut(s)	596
BmgT120I	GGNCC	3 cut(s)	231, 596, 936
BmiI	GGNNCC	2 cut(s)	232, 597
BmrFI	CCNGG	4 cut(s)	138, 271, 470, 600
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	568, 831
BmtI	GCTAGC	1 cut(s)	929
BmuI	ACTGGG	1 cut(s)	201
BoxI	GACNNNNGTC	1 cut(s)	436
BpmI	CTGGAG	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	896
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	229
BsaJI	CCNNGG	4 cut(s)	468, 599, 860, 932
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 781
Bse118I	RCCGGY	1 cut(s)	774
Bse1I	ACTGG	2 cut(s)	18, 196
Bse21I	CCTNAGG	1 cut(s)	644
Bse3DI	GCAATG	1 cut(s)	449
Bse8I	GATNNNNATC	1 cut(s)	896
BseBI	CCWGG	3 cut(s)	138, 470, 600
BseDI	CCNNGG	4 cut(s)	468, 599, 860, 932
BseGI	GGATG	5 cut(s)	518, 634, 835, 846, 897
BseJI	GATNNNNATC	1 cut(s)	896
BseLI	CCNNNNNNNGG	2 cut(s)	276, 781
BseMI	GCAATG	1 cut(s)	449
BseNI	ACTGG	2 cut(s)	18, 196
BseSI	GKGCMC	1 cut(s)	637
BseXI	GCAGC	3 cut(s)	503, 684, 701
BseYI	CCCAGC	2 cut(s)	127, 371
BshFI	GGCC	3 cut(s)	233, 517, 938
BsiHKAI	GWGCWC	1 cut(s)	637
BsiSI	CCGG	2 cut(s)	270, 775
BslFI	GGGAC	4 cut(s)	98, 106, 133, 609
BslI	CCNNNNNNNGG	2 cut(s)	276, 781
BsmAI	GTCTC	3 cut(s)	229, 415, 444
BsmFI	GGGAC	4 cut(s)	98, 106, 133, 609
BsnI	GGCC	3 cut(s)	233, 517, 938
Bso31I	GGTCTC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	4 cut(s)	299, 655, 784, 897
BspANI	GGCC	3 cut(s)	233, 517, 938
BspHI	TCATGA	1 cut(s)	900
BspLI	GGNNCC	2 cut(s)	232, 597
BspMAI	CTGCAG	1 cut(s)	493
BspOI	GCTAGC	1 cut(s)	929
BspPI	GGATC	3 cut(s)	307, 792, 905
BspTNI	GGTCTC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	449
BsrFI	RCCGGY	1 cut(s)	774
BsrI	ACTGG	2 cut(s)	18, 196
BssAI	RCCGGY	1 cut(s)	774
BssECI	CCNNGG	4 cut(s)	468, 599, 860, 932
BssMI	GATC	4 cut(s)	299, 655, 784, 897
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	932
Bst2UI	CCWGG	3 cut(s)	138, 470, 600
Bst4CI	ACNGT	1 cut(s)	438
Bst6I	CTCTTC	1 cut(s)	899
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	2 cut(s)	134, 927
BstDSI	CCRYGG	1 cut(s)	860
BstF5I	GGATG	5 cut(s)	518, 634, 835, 846, 897
BstH2I	RGCGCY	1 cut(s)	698
BstHHI	GCGC	1 cut(s)	697
BstKTI	GATC	4 cut(s)	302, 658, 787, 900
BstMAI	GTCTC	3 cut(s)	229, 415, 444
BstMBI	GATC	4 cut(s)	299, 655, 784, 897
BstMWI	GCNNNNNNNGC	6 cut(s)	133, 138, 413, 491, 497, 935
BstNI	CCWGG	3 cut(s)	138, 470, 600
BstNSI	RCATGY	1 cut(s)	885
BstPAI	GACNNNNGTC	1 cut(s)	436
BstSCI	CCNGG	4 cut(s)	136, 269, 468, 598
BstSFI	CTRYAG	2 cut(s)	489, 918
BstSLI	GKGCMC	1 cut(s)	637
BstV1I	GCAGC	3 cut(s)	503, 684, 701
BstX2I	RGATCY	2 cut(s)	299, 784
BstYI	RGATCY	2 cut(s)	299, 784
Bsu36I	CCTNAGG	1 cut(s)	644
BsuRI	GGCC	3 cut(s)	233, 517, 938
BtgI	CCRYGG	1 cut(s)	860
BtgZI	GCGATG	1 cut(s)	867
BtsCI	GGATG	5 cut(s)	518, 634, 835, 846, 897
BtsIMutI	CAGTG	3 cut(s)	11, 114, 873
Cac8I	GCNNGC	2 cut(s)	134, 927
CaiI	CAGNNNCTG	2 cut(s)	44, 143
CciI	TCATGA	1 cut(s)	900
CfoI	GCGC	1 cut(s)	697
Cfr10I	RCCGGY	1 cut(s)	774
Cfr13I	GGNCC	3 cut(s)	231, 596, 936
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	7 cut(s)	20, 455, 625, 743, 882, 901, 940
CviQI	GTAC	1 cut(s)	196
DpnI	GATC	4 cut(s)	301, 657, 786, 899
DpnII	GATC	4 cut(s)	299, 655, 784, 897
DrdI	GACNNNNNNGTC	1 cut(s)	603
DseDI	GACNNNNNNGTC	1 cut(s)	603
EaeI	YGGCCR	1 cut(s)	515
Eam1104I	CTCTTC	1 cut(s)	899
EarI	CTCTTC	1 cut(s)	899
Eco130I	CCWWGG	1 cut(s)	932
Eco31I	GGTCTC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	596
Eco81I	CCTNAGG	1 cut(s)	644
EcoRI	GAATTC	1 cut(s)	541
EcoRII	CCWGG	3 cut(s)	136, 468, 598
EcoT14I	CCWWGG	1 cut(s)	932
ErhI	CCWWGG	1 cut(s)	932
FaeI	CATG	7 cut(s)	23, 458, 628, 746, 885, 904, 943
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	4 cut(s)	98, 106, 133, 609
FatI	CATG	7 cut(s)	19, 454, 624, 742, 881, 900, 939
FauNDI	CATATG	1 cut(s)	667
Fnu4HI	GCNGC	3 cut(s)	492, 673, 715
FokI	GGATG	5 cut(s)	525, 641, 842, 853, 904
Fsp4HI	GCNGC	3 cut(s)	492, 673, 715
FspBI	CTAG	2 cut(s)	845, 926
GlaI	GCGC	1 cut(s)	696
GluI	GCNGC	3 cut(s)	492, 673, 715
GsaI	CCCAGC	2 cut(s)	131, 375
GsuI	CTGGAG	1 cut(s)	35
HaeII	RGCGCY	1 cut(s)	698
HaeIII	GGCC	3 cut(s)	233, 517, 938
HapII	CCGG	2 cut(s)	270, 775
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	1 cut(s)	697
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	7 cut(s)	23, 458, 628, 746, 885, 904, 943
Hin6I	GCGC	1 cut(s)	695
HinP1I	GCGC	1 cut(s)	695
HinfI	GANTC	3 cut(s)	41, 146, 380
HpaII	CCGG	2 cut(s)	270, 775
HphI	GGTGA	1 cut(s)	805
Hpy166II	GTNNAC	3 cut(s)	431, 635, 873
Hpy188I	TCNGA	9 cut(s)	40, 67, 102, 145, 250, 304, 379, 564, 913
Hpy188III	TCNNGA	3 cut(s)	535, 753, 901
Hpy8I	GTNNAC	3 cut(s)	431, 635, 873
HpyAV	CCTTC	1 cut(s)	578
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	7 cut(s)	454, 491, 581, 635, 885, 943, 951
HpyF10VI	GCNNNNNNNGC	6 cut(s)	133, 138, 413, 491, 497, 935
HpySE526I	ACGT	1 cut(s)	612
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	7 cut(s)	23, 458, 628, 746, 885, 904, 943
HspAI	GCGC	1 cut(s)	695
Kzo9I	GATC	4 cut(s)	299, 655, 784, 897
LmnI	GCTCC	2 cut(s)	16, 263
Lsp1109I	GCAGC	3 cut(s)	503, 684, 701
LweI	GCATC	2 cut(s)	568, 831
MaeI	CTAG	2 cut(s)	845, 926
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	2 cut(s)	9, 326
MalI	GATC	4 cut(s)	301, 657, 786, 899
MboI	GATC	4 cut(s)	299, 655, 784, 897
MboII	GAAGA	5 cut(s)	42, 472, 550, 833, 916
MfeI	CAATTG	1 cut(s)	723
MflI	RGATCY	2 cut(s)	299, 784
MhlI	GDGCHC	1 cut(s)	637
MlsI	TGGCCA	1 cut(s)	517
MluCI	AATT	4 cut(s)	522, 541, 723, 961
MluNI	TGGCCA	1 cut(s)	517
MlyI	GAGTC	3 cut(s)	50, 155, 389
Mox20I	TGGCCA	1 cut(s)	517
MscI	TGGCCA	1 cut(s)	517
MseI	TTAA	4 cut(s)	213, 351, 615, 779
Msp20I	TGGCCA	1 cut(s)	517
MspI	CCGG	2 cut(s)	270, 775
MspR9I	CCNGG	4 cut(s)	138, 271, 470, 600
MunI	CAATTG	1 cut(s)	723
MvaI	CCWGG	3 cut(s)	138, 470, 600
MwoI	GCNNNNNNNGC	6 cut(s)	133, 138, 413, 491, 497, 935
NciI	CCSGG	1 cut(s)	271
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	4 cut(s)	299, 655, 784, 897
NheI	GCTAGC	1 cut(s)	925
NlaIII	CATG	7 cut(s)	23, 458, 628, 746, 885, 904, 943
NlaIV	GGNNCC	2 cut(s)	232, 597
NmuCI	GTSAC	1 cut(s)	9
NspI	RCATGY	1 cut(s)	885
PagI	TCATGA	1 cut(s)	900
PfoI	TCCNGGA	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	493, 674, 716
PleI	GAGTC	3 cut(s)	49, 154, 388
PpsI	GAGTC	3 cut(s)	49, 154, 388
PshAI	GACNNNNGTC	1 cut(s)	436
Psp6I	CCWGG	3 cut(s)	136, 468, 598
PspFI	CCCAGC	2 cut(s)	127, 371
PspGI	CCWGG	3 cut(s)	136, 468, 598
PspN4I	GGNNCC	2 cut(s)	232, 597
PspPI	GGNCC	3 cut(s)	231, 596, 936
PstI	CTGCAG	1 cut(s)	493
PstNI	CAGNNNCTG	2 cut(s)	44, 143
PsuI	RGATCY	2 cut(s)	299, 784
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	4 cut(s)	213, 351, 615, 779
SatI	GCNGC	3 cut(s)	492, 673, 715
Sau3AI	GATC	4 cut(s)	299, 655, 784, 897
Sau96I	GGNCC	3 cut(s)	231, 596, 936
SchI	GAGTC	3 cut(s)	50, 155, 389
ScrFI	CCNGG	4 cut(s)	138, 271, 470, 600
SduI	GDGCHC	1 cut(s)	637
SfaNI	GCATC	2 cut(s)	568, 831
SfcI	CTRYAG	2 cut(s)	489, 918
SinI	GGWCC	1 cut(s)	596
Sse9I	AATT	4 cut(s)	522, 541, 723, 961
SspMI	CTAG	2 cut(s)	845, 926
StyD4I	CCNGG	4 cut(s)	136, 269, 468, 598
StyI	CCWWGG	1 cut(s)	932
TaaI	ACNGT	1 cut(s)	438
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	1 cut(s)	654
TasI	AATT	4 cut(s)	522, 541, 723, 961
Tru1I	TTAA	4 cut(s)	213, 351, 615, 779
Tru9I	TTAA	4 cut(s)	213, 351, 615, 779
TscAI	CASTG	3 cut(s)	18, 121, 880
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	3 cut(s)	491, 672, 714
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	2 cut(s)	834, 917
TspGWI	ACGGA	2 cut(s)	544, 849
TspRI	CASTG	3 cut(s)	18, 121, 880
VneI	GTGCAC	1 cut(s)	633
VpaK11BI	GGWCC	1 cut(s)	596
XapI	RAATTY	1 cut(s)	541
XceI	RCATGY	1 cut(s)	885
XspI	CTAG	2 cut(s)	845, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.