Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001280

Physical Location & Seq

Genomic Coordinates Forward (+)

15862117 .. 15862814

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGAACGGAAACGGTGTCGTTTAAGTGGGAGGGTAAGAAAGTCGCTCAAGTCAACGGTGTCACGGCTGAGAAAGTTTGGTCGGTTTTTTCTGACTTCTGCAACGTCCAAGAGTGGTTCCCATCAGTCGATACGTGTTACCGAGTCCAAGGAACCGATGGTGTACCGGGTCTGATCCGATACTGCTCCACCACCAAAACCAAGGAAGAGGGAAGCAGGTGGGCTAAAGAGAAGCTGGTCAAGATCGATCCCATTGGACGGTGTTTGAGCTATGAGATCCTCGAGAATAACGTAGGGTTTAGATCTTACGTGGCGACAGTCCAAGTAACGCCAGTGGACGGTGAAGATCAAGTGTCTCGAATCGAGTGGTCGTTTGTTGCCGATCCTGTTGATGGTTGGAAGAAGGAAGACCTCGAATCATACGTTGACTTTTGCCTTCAACATATGGCCAACAAAATGGAACTCAATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

157

Amino Acids

17.88

Weight (kDa)

4.88

Isoelectric Point (pI)

27.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	16 - 154	3.2e-25	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32870
fragaria_vesca	FvH4_2g35410 FvH4_2g35420 FvH4_7g16550
malus_domestica	MD08G1112200.v1.1 MD08G1112400.v1.1 MD15G1091600.v1.1
prunus_persica	Prupe.1G446300_v2.0.a1 Prupe.1G446400_v2.0.a1 Prupe.1G446600_v2.0.a1
pyrus_communis	pycom08g09320 pycom08g09330
rosa_chinensis	RchiOBHm_Chr1g0359611 RchiOBHm_Chr6g0306471 RchiOBHm_Chr6g0306481 RchiOBHm_Chr6g0306491 RchiOBHm_Chr7g0223821
rosa_laevigata	RLG00000001927 RLG00000010792 RLG00000010793 RLG00000010794 RLG00000027858
rosa_multiflora	Rmu_co8209076.1_g000001 Rmu_sc0002971.1_g000012 Rmu_sc0002971.1_g000013 Rmu_sc0013097.1_g000009
rosa_roxburghii	Rroxscaffold_3G00235260 Rroxscaffold_4G00296890 Rroxscaffold_7G00161730 Rroxscaffold_7G00161740
rosa_rugosa	Rorug01G0272300 Rorug06G0349800 Rorug06G0349900 Rorug06G0349900 Rorug07G0220700
rosa_samantha	Rh1AG286000 Rh1BG252200 Rh1CG269400 Rh1DG281300 Rh6AG461900 Rh6AG462000 Rh6BG438800 Rh6BG438900 Rh6BG439100 Rh6CG476100 Rh6CG476300 Rh6DG462800 Rh6DG462900 Rh6DG463000 Rh7AG363400 Rh7BG354500 Rh7CG381800
rosa_wichuraiana	Rw1G025410 Rw6G040260 Rw6G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	207
AclWI	GGATC	4 cut(s)	169, 242, 271, 377
AcoI	YGGCCR	1 cut(s)	447
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	3 cut(s)	258, 338, 392
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	440
AluBI	AGCT	2 cut(s)	235, 270
AluI	AGCT	2 cut(s)	235, 270
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	4 cut(s)	169, 242, 271, 377
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	447
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	414
BccI	CCATC	3 cut(s)	130, 152, 386
BceAI	ACGGC	1 cut(s)	81
BcnI	CCSGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	207
BglII	AGATCT	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	281
BmiI	GGNNCC	2 cut(s)	119, 154
BmrFI	CCNGG	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	168
Bsa29I	ATCGAT	1 cut(s)	246
BsaAI	YACGTR	2 cut(s)	135, 310
BsaJI	CCNNGG	2 cut(s)	148, 201
Bsc4I	CCNNNNNNNGG	3 cut(s)	258, 338, 392
Bse1I	ACTGG	1 cut(s)	332
BseCI	ATCGAT	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	148, 201
BseLI	CCNNNNNNNGG	3 cut(s)	258, 338, 392
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	332
BshFI	GGCC	1 cut(s)	449
BshVI	ATCGAT	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	3 cut(s)	258, 338, 392
BsmAI	GTCTC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	449
BsoBI	CYCGRG	1 cut(s)	281
Bsp143I	GATC	7 cut(s)	174, 243, 247, 276, 302, 346, 382
BspANI	GGCC	1 cut(s)	449
BspCNI	CTCAG	1 cut(s)	61
BspDI	ATCGAT	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	119, 154
BspMI	ACCTGC	1 cut(s)	207
BspPI	GGATC	4 cut(s)	169, 242, 271, 377
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	148, 201
BssMI	GATC	7 cut(s)	174, 243, 247, 276, 302, 346, 382
BssT1I	CCWWGG	2 cut(s)	148, 201
Bst4CI	ACNGT	5 cut(s)	16, 59, 261, 319, 341
Bst6I	CTCTTC	1 cut(s)	201
BstBAI	YACGTR	2 cut(s)	135, 310
BstDEI	CTNAG	1 cut(s)	69
BstKTI	GATC	7 cut(s)	177, 246, 250, 279, 305, 349, 385
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	7 cut(s)	174, 243, 247, 276, 302, 346, 382
BstSCI	CCNGG	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	2 cut(s)	276, 302
BstXI	CCANNNNNNTGG	1 cut(s)	457
BstYI	RGATCY	2 cut(s)	276, 302
Bsu15I	ATCGAT	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	449
BsuTUI	ATCGAT	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	339
BveI	ACCTGC	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	164
CviJI	RGCY	5 cut(s)	68, 224, 235, 270, 449
CviKI_1	RGCY	5 cut(s)	68, 224, 235, 270, 449
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	7 cut(s)	176, 245, 249, 278, 304, 348, 384
DpnII	GATC	7 cut(s)	174, 243, 247, 276, 302, 346, 382
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	2 cut(s)	148, 201
Eco88I	CYCGRG	1 cut(s)	281
EcoT14I	CCWWGG	2 cut(s)	148, 201
ErhI	CCWWGG	2 cut(s)	148, 201
FaiI	YATR	4 cut(s)	273, 421, 444, 446
FauNDI	CATATG	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	449
HapII	CCGG	1 cut(s)	167
HincII	GTYRAC	2 cut(s)	55, 427
HindII	GTYRAC	2 cut(s)	55, 427
HinfI	GANTC	3 cut(s)	144, 360, 416
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	4 cut(s)	55, 164, 337, 427
Hpy188I	TCNGA	3 cut(s)	94, 174, 179
Hpy188III	TCNNGA	3 cut(s)	241, 283, 357
Hpy8I	GTNNAC	4 cut(s)	55, 164, 337, 427
HpyAV	CCTTC	2 cut(s)	397, 446
HpyCH4III	ACNGT	5 cut(s)	16, 59, 261, 319, 341
HpyCH4IV	ACGT	5 cut(s)	105, 134, 291, 309, 423
HpyCH4V	TGCA	1 cut(s)	102
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	5 cut(s)	105, 134, 291, 309, 423
Kzo9I	GATC	7 cut(s)	174, 243, 247, 276, 302, 346, 382
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	5 cut(s)	180, 202, 221, 345, 399
MaeII	ACGT	5 cut(s)	105, 134, 291, 309, 423
MaeIII	GTNAC	3 cut(s)	61, 137, 325
MalI	GATC	7 cut(s)	176, 245, 249, 278, 304, 348, 384
MboI	GATC	7 cut(s)	174, 243, 247, 276, 302, 346, 382
MboII	GAAGA	4 cut(s)	218, 356, 412, 419
MflI	RGATCY	2 cut(s)	276, 302
MlsI	TGGCCA	1 cut(s)	449
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	1 cut(s)	153
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	4 cut(s)	25, 202, 290, 422
Mox20I	TGGCCA	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	449
MseI	TTAA	1 cut(s)	24
Msp20I	TGGCCA	1 cut(s)	449
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	168
NciI	CCSGG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	444
NdeII	GATC	7 cut(s)	174, 243, 247, 276, 302, 346, 382
NlaIV	GGNNCC	2 cut(s)	119, 154
NmuCI	GTSAC	1 cut(s)	61
PaeR7I	CTCGAG	1 cut(s)	281
PaqCI	CACCTGC	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	2 cut(s)	288, 420
PfeI	GAWTC	2 cut(s)	360, 416
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Ppu21I	YACGTR	2 cut(s)	135, 310
PspN4I	GGNNCC	2 cut(s)	119, 154
PsuI	RGATCY	2 cut(s)	276, 302
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	24
Sau3AI	GATC	7 cut(s)	174, 243, 247, 276, 302, 346, 382
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	9 cut(s)	108, 137, 221, 237, 272, 294, 312, 414, 426
Sfr274I	CTCGAG	1 cut(s)	281
SlaI	CTCGAG	1 cut(s)	281
SmlI	CTYRAG	2 cut(s)	48, 281
SmoI	CTYRAG	2 cut(s)	48, 281
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	2 cut(s)	148, 201
TaaI	ACNGT	5 cut(s)	16, 59, 261, 319, 341
TaiI	ACGT	5 cut(s)	108, 137, 294, 312, 426
TaqI	TCGA	6 cut(s)	129, 246, 282, 358, 363, 414
TfiI	GAWTC	2 cut(s)	360, 416
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	61
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	155
XhoI	CTCGAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.