Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001280

Physical Location & Seq

Genomic Coordinates Reverse (-)

4405426 .. 4405902

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010794

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAAGAACAAGCACAGCCCAAATGGCGAGGCAGGTCCTCTGCTGAGGTGAATGGCCATGCAGCACAAGAGGTGTGGCCTCTCTTGACTGATTTCTGCAACCTACACAAAGTATTCCCCAAAGTCGAGACATGTTACCAACTAGAAGGAATCGCCGGCCAAACTGGTCTAGTTCGATACTGCGCCGGATTTGCGAGCAATCGTGACGAGTCGACCATCAAGTGGGCCAAAGAGAGACTCCTGATGATCGACCCAATGAAACGGTGCTTAAGCTACGAGGTCATTGATAGTAACATGGCGTTTAAGTCATACGTAGCAATAATGCATGTAGTCCCGATAAACGACGATGGTTCCATGATCGAGTGGTCATTTGTTTGTGATCCGACCGAGGGCAGGAAAATGGAAGACGTTCAATCCTTTGGTGAATCTTCTCTTCAATCTATAGCAAAGAAGATCGAGCATGTTCTTACCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

159

Amino Acids

17.9

Weight (kDa)

5.38

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	12 - 152	6.8e-18	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32870
fragaria_vesca	FvH4_2g35410 FvH4_2g35420 FvH4_7g16550
malus_domestica	MD08G1112200.v1.1 MD08G1112400.v1.1 MD15G1091600.v1.1
prunus_persica	Prupe.1G446300_v2.0.a1 Prupe.1G446400_v2.0.a1 Prupe.1G446600_v2.0.a1
pyrus_communis	pycom08g09320 pycom08g09330
rosa_chinensis	RchiOBHm_Chr1g0359611 RchiOBHm_Chr6g0306471 RchiOBHm_Chr6g0306481 RchiOBHm_Chr6g0306491 RchiOBHm_Chr7g0223821
rosa_laevigata	RLG00000001927 RLG00000010792 RLG00000010793 RLG00000010794 RLG00000027858
rosa_multiflora	Rmu_co8209076.1_g000001 Rmu_sc0002971.1_g000012 Rmu_sc0002971.1_g000013 Rmu_sc0013097.1_g000009
rosa_roxburghii	Rroxscaffold_3G00235260 Rroxscaffold_4G00296890 Rroxscaffold_7G00161730 Rroxscaffold_7G00161740
rosa_rugosa	Rorug01G0272300 Rorug06G0349800 Rorug06G0349900 Rorug06G0349900 Rorug07G0220700
rosa_samantha	Rh1AG286000 Rh1BG252200 Rh1CG269400 Rh1DG281300 Rh6AG461900 Rh6AG462000 Rh6BG438800 Rh6BG438900 Rh6BG439100 Rh6CG476100 Rh6CG476300 Rh6DG462800 Rh6DG462900 Rh6DG463000 Rh7AG363400 Rh7BG354500 Rh7CG381800
rosa_wichuraiana	Rw1G025410 Rw6G040260 Rw6G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	24
AccB7I	CCANNNNNTGG	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	212
AclWI	GGATC	1 cut(s)	374
AcoI	YGGCCR	2 cut(s)	55, 157
AfiI	CCNNNNNNNGG	3 cut(s)	222, 389, 393
AflII	CTTAAG	1 cut(s)	268
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	413, 437
AluBI	AGCT	1 cut(s)	273
AluI	AGCT	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	122, 229
AlwI	GGATC	1 cut(s)	374
AoxI	GGCC	4 cut(s)	55, 77, 157, 225
ApeKI	GCWGC	1 cut(s)	62
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	36, 225
AsuHPI	GGTGA	2 cut(s)	61, 434
AvaII	GGWCC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	411
BbvCI	CCTCAGC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	224, 341
BcoDI	GTCTC	2 cut(s)	122, 229
BfaI	CTAG	2 cut(s)	143, 170
BfmI	CTRYAG	1 cut(s)	441
BfrI	CTTAAG	1 cut(s)	268
BfuAI	ACCTGC	1 cut(s)	24
BglI	GCCNNNNNGGC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	36, 225
BmiI	GGNNCC	1 cut(s)	352
BpiI	GAAGAC	1 cut(s)	411
Bpu10I	CCTNAGC	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	313
BsaJI	CCNNGG	1 cut(s)	387
Bsc4I	CCNNNNNNNGG	3 cut(s)	222, 389, 393
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	169, 471
BseDI	CCNNGG	1 cut(s)	387
BseLI	CCNNNNNNNGG	3 cut(s)	222, 389, 393
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	169, 471
BseXI	GCAGC	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	4 cut(s)	57, 79, 159, 227
BsiEI	CGRYCG	1 cut(s)	387
BsiSI	CCGG	2 cut(s)	156, 186
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	3 cut(s)	222, 389, 393
BsmAI	GTCTC	2 cut(s)	122, 229
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	4 cut(s)	57, 79, 159, 227
Bsp143I	GATC	4 cut(s)	246, 357, 379, 453
BspANI	GGCC	4 cut(s)	57, 79, 159, 227
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	352
BspMI	ACCTGC	1 cut(s)	24
BspPI	GGATC	1 cut(s)	374
BspTI	CTTAAG	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	169, 471
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	4 cut(s)	246, 357, 379, 453
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	438
BstAFI	CTTAAG	1 cut(s)	268
BstBAI	YACGTR	1 cut(s)	313
BstC8I	GCNNGC	2 cut(s)	157, 196
BstDEI	CTNAG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	4 cut(s)	249, 360, 382, 456
BstMAI	GTCTC	2 cut(s)	122, 229
BstMBI	GATC	4 cut(s)	246, 357, 379, 453
BstMCI	CGRYCG	1 cut(s)	387
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 191
BstNSI	RCATGY	3 cut(s)	135, 329, 464
BstSFI	CTRYAG	1 cut(s)	441
BstSNI	TACGTA	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	411
BsuRI	GGCC	4 cut(s)	57, 79, 159, 227
BveI	ACCTGC	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	157, 196
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	36, 225
CspCI	CAANNNNNGTGG	2 cut(s)	56, 91
CviAII	CATG	6 cut(s)	59, 132, 295, 326, 355, 461
CviJI	RGCY	6 cut(s)	19, 57, 79, 159, 227, 273
CviKI_1	RGCY	6 cut(s)	19, 57, 79, 159, 227, 273
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	4 cut(s)	248, 359, 381, 455
DpnII	GATC	4 cut(s)	246, 357, 379, 453
EaeI	YGGCCR	2 cut(s)	55, 157
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco105I	TACGTA	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	327
FaeI	CATG	6 cut(s)	62, 135, 298, 329, 358, 464
FaiI	YATR	8 cut(s)	60, 133, 296, 310, 327, 356, 443, 462
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	6 cut(s)	58, 131, 294, 325, 354, 460
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	2 cut(s)	143, 170
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	4 cut(s)	57, 79, 159, 227
HapII	CCGG	2 cut(s)	156, 186
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	6 cut(s)	62, 135, 298, 329, 358, 464
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	4 cut(s)	150, 209, 237, 425
HpaII	CCGG	2 cut(s)	156, 186
HphI	GGTGA	2 cut(s)	61, 434
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	384
Hpy188III	TCNNGA	5 cut(s)	85, 127, 203, 241, 334
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4IV	ACGT	2 cut(s)	312, 408
HpyCH4V	TGCA	3 cut(s)	62, 99, 325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 191
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	2 cut(s)	312, 408
Hsp92II	CATG	6 cut(s)	62, 135, 298, 329, 358, 464
HspAI	GCGC	1 cut(s)	183
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	246, 357, 379, 453
LpnPI	CCDG	6 cut(s)	19, 150, 169, 199, 254, 379
Lsp1109I	GCAGC	1 cut(s)	74
MaeI	CTAG	2 cut(s)	143, 170
MaeII	ACGT	2 cut(s)	312, 408
MaeIII	GTNAC	3 cut(s)	134, 203, 290
MalI	GATC	4 cut(s)	248, 359, 381, 455
MboI	GATC	4 cut(s)	246, 357, 379, 453
MboII	GAAGA	5 cut(s)	17, 416, 420, 425, 463
MlsI	TGGCCA	1 cut(s)	57
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	2 cut(s)	218, 231
MmeI	TCCRAC	1 cut(s)	407
MnlI	CCTC	7 cut(s)	23, 40, 49, 64, 90, 271, 382
Mox20I	TGGCCA	1 cut(s)	57
Mph1103I	ATGCAT	1 cut(s)	327
MroNI	GCCGGC	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	408
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	2 cut(s)	269, 303
Msp20I	TGGCCA	1 cut(s)	57
MspCI	CTTAAG	1 cut(s)	268
MspI	CCGG	2 cut(s)	156, 186
MwoI	GCNNNNNNNGC	2 cut(s)	25, 191
NaeI	GCCGGC	1 cut(s)	157
NdeII	GATC	4 cut(s)	246, 357, 379, 453
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	6 cut(s)	62, 135, 298, 329, 358, 464
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	203
NsiI	ATGCAT	1 cut(s)	327
NspI	RCATGY	3 cut(s)	135, 329, 464
PciI	ACATGT	1 cut(s)	131
PdiI	GCCGGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	150, 425
PflMI	CCANNNNNTGG	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	2 cut(s)	217, 231
PpsI	GAGTC	2 cut(s)	217, 231
Ppu21I	YACGTR	1 cut(s)	313
PpuMI	RGGWCCY	1 cut(s)	36
PscI	ACATGT	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	2 cut(s)	36, 225
PspPPI	RGGWCCY	1 cut(s)	36
SalI	GTCGAC	1 cut(s)	211
SaqAI	TTAA	2 cut(s)	269, 303
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	246, 357, 379, 453
Sau96I	GGNCC	2 cut(s)	36, 225
SchI	GAGTC	2 cut(s)	218, 231
SetI	ASST	8 cut(s)	38, 51, 75, 105, 275, 282, 315, 411
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SnaBI	TACGTA	1 cut(s)	313
SspMI	CTAG	2 cut(s)	143, 170
TaaI	ACNGT	1 cut(s)	264
TaiI	ACGT	2 cut(s)	315, 411
TaqI	TCGA	6 cut(s)	126, 175, 212, 249, 360, 456
TaqII	GACCGA	1 cut(s)	401
TfiI	GAWTC	2 cut(s)	150, 425
Tru1I	TTAA	2 cut(s)	269, 303
Tru9I	TTAA	2 cut(s)	269, 303
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	272
Van91I	CCANNNNNTGG	1 cut(s)	222
Vha464I	CTTAAG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	36
XceI	RCATGY	3 cut(s)	135, 329, 464
XmiI	GTMKAC	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	2 cut(s)	143, 170
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.