Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8209076.1

Orthogroup ID

OG0001280

Physical Location & Seq

Genomic Coordinates Reverse (-)

245 .. 723

Gene Structure 479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8209076.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 479 bp

aatgggaaggtaaaacctcagccgagctcaaaagctcaccagcacaacaggtctggcctttccttgccgatttctgcaacttacacaaagtcttcccaggccttgaaacttgctaccaggtcgagggagtccccggccagccgggcctgatccgctgctgcgccggactggctaccaataacgacgagagcaccgtaatgtgggccaaagagaagctgatcgcggttgatccaatcaaacggtgcttcagctaccagatgcttgagaataacaaggggttcaagtcgtatgtcgcaaccatgcaagtggttccggtgataaacgacgatgaagggtgcatgatcgagtggtcgtttgtttctgatccggtggaagggtggggattggaggagtttcagtcttttcgtgagtcgagtctacaagggatggcaaagaagattgaggatgctcttcagtccagtactagtgctaccgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

158

Amino Acids

17.55

Weight (kDa)

4.64

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32870
fragaria_vesca	FvH4_2g35410 FvH4_2g35420 FvH4_7g16550
malus_domestica	MD08G1112200.v1.1 MD08G1112400.v1.1 MD15G1091600.v1.1
prunus_persica	Prupe.1G446300_v2.0.a1 Prupe.1G446400_v2.0.a1 Prupe.1G446600_v2.0.a1
pyrus_communis	pycom08g09320 pycom08g09330
rosa_chinensis	RchiOBHm_Chr1g0359611 RchiOBHm_Chr6g0306471 RchiOBHm_Chr6g0306481 RchiOBHm_Chr6g0306491 RchiOBHm_Chr7g0223821
rosa_laevigata	RLG00000001927 RLG00000010792 RLG00000010793 RLG00000010794 RLG00000027858
rosa_multiflora	Rmu_co8209076.1_g000001 Rmu_sc0002971.1_g000012 Rmu_sc0002971.1_g000013 Rmu_sc0013097.1_g000009
rosa_roxburghii	Rroxscaffold_3G00235260 Rroxscaffold_4G00296890 Rroxscaffold_7G00161730 Rroxscaffold_7G00161740
rosa_rugosa	Rorug01G0272300 Rorug06G0349800 Rorug06G0349900 Rorug06G0349900 Rorug07G0220700
rosa_samantha	Rh1AG286000 Rh1BG252200 Rh1CG269400 Rh1DG281300 Rh6AG461900 Rh6AG462000 Rh6BG438800 Rh6BG438900 Rh6BG439100 Rh6CG476100 Rh6CG476300 Rh6DG462800 Rh6DG462900 Rh6DG463000 Rh7AG363400 Rh7BG354500 Rh7CG381800
rosa_wichuraiana	Rw1G025410 Rw6G040260 Rw6G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	417
AccII	CGCG	1 cut(s)	223
AciI	CCGC	2 cut(s)	153, 223
AclWI	GGATC	3 cut(s)	144, 223, 358
AcoI	YGGCCR	1 cut(s)	135
AcuI	CTGAAG	2 cut(s)	231, 436
AfaI	GTAC	1 cut(s)	462
AfiI	CCNNNNNNNGG	3 cut(s)	123, 200, 373
AgsI	TTSAA	2 cut(s)	106, 282
AhlI	ACTAGT	1 cut(s)	463
AjnI	CCWGG	2 cut(s)	96, 116
AluBI	AGCT	4 cut(s)	27, 35, 216, 251
AluI	AGCT	4 cut(s)	27, 35, 216, 251
Alw21I	GWGCWC	2 cut(s)	29, 193
AlwI	GGATC	3 cut(s)	144, 223, 358
AoxI	GGCC	5 cut(s)	55, 99, 135, 144, 203
ApeKI	GCWGC	2 cut(s)	155, 158
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	144, 203
AsuC2I	CCSGG	2 cut(s)	134, 143
AsuHPI	GGTGA	2 cut(s)	29, 327
BanII	GRGCYC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	2 cut(s)	29, 193
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	142, 145
BccI	CCATC	1 cut(s)	420
BciT130I	CCWGG	2 cut(s)	98, 118
BcnI	CCSGG	2 cut(s)	134, 143
BcuI	ACTAGT	1 cut(s)	463
BfaI	CTAG	1 cut(s)	464
BglI	GCCNNNNNGGC	2 cut(s)	143, 169
BisI	GCNGC	2 cut(s)	156, 159
BlsI	GCNGC	2 cut(s)	157, 160
BmcAI	AGTACT	1 cut(s)	462
Bme1390I	CCNGG	4 cut(s)	98, 118, 134, 143
BmgT120I	GGNCC	2 cut(s)	144, 203
BmiI	GGNNCC	1 cut(s)	311
BmrFI	CCNGG	4 cut(s)	98, 118, 134, 143
BmsI	GCATC	2 cut(s)	248, 435
BpiI	GAAGAC	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	283
BpuMI	CCSGG	2 cut(s)	134, 143
BsaJI	CCNNGG	2 cut(s)	96, 132
BsaWI	WCCGGW	2 cut(s)	312, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 200, 373
Bse1I	ACTGG	2 cut(s)	173, 458
BseBI	CCWGG	2 cut(s)	98, 118
BseDI	CCNNGG	2 cut(s)	96, 132
BseGI	GGATG	2 cut(s)	431, 450
BseLI	CCNNNNNNNGG	3 cut(s)	123, 200, 373
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	173, 458
BseRI	GAGGAG	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	142, 145
Bsh1236I	CGCG	1 cut(s)	223
BshFI	GGCC	5 cut(s)	57, 101, 137, 146, 205
BsiHKAI	GWGCWC	2 cut(s)	29, 193
BsiSI	CCGG	5 cut(s)	134, 142, 164, 313, 367
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	123, 200, 373
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	5 cut(s)	57, 101, 137, 146, 205
Bsp1286I	GDGCHC	2 cut(s)	29, 193
Bsp143I	GATC	5 cut(s)	149, 218, 228, 341, 363
BspACI	CCGC	2 cut(s)	153, 223
BspANI	GGCC	5 cut(s)	57, 101, 137, 146, 205
BspCNI	CTCAG	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	144, 223, 358
BspQI	GCTCTTC	1 cut(s)	455
BsrI	ACTGG	2 cut(s)	173, 458
BssECI	CCNNGG	2 cut(s)	96, 132
BssMI	GATC	5 cut(s)	149, 218, 228, 341, 363
Bst2UI	CCWGG	2 cut(s)	98, 118
Bst4CI	ACNGT	3 cut(s)	195, 242, 474
Bst6I	CTCTTC	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	431, 450
BstFNI	CGCG	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	5 cut(s)	152, 221, 231, 344, 366
BstMBI	GATC	5 cut(s)	149, 218, 228, 341, 363
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 152, 169
BstNI	CCWGG	2 cut(s)	98, 118
BstSCI	CCNGG	4 cut(s)	96, 116, 132, 141
BstUI	CGCG	1 cut(s)	223
BstV1I	GCAGC	2 cut(s)	142, 145
BstV2I	GAAGAC	1 cut(s)	84
BstXI	CCANNNNNNTGG	1 cut(s)	306
BsuRI	GGCC	5 cut(s)	57, 101, 137, 146, 205
BtsCI	GGATG	2 cut(s)	431, 450
Cac8I	GCNNGC	1 cut(s)	139
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	144, 203
CsiI	ACCWGGT	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	461
CviAII	CATG	2 cut(s)	300, 339
CviQI	GTAC	1 cut(s)	461
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	5 cut(s)	151, 220, 230, 343, 365
DpnII	GATC	5 cut(s)	149, 218, 228, 341, 363
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Ecl136II	GAGCTC	1 cut(s)	27
Eco147I	AGGCCT	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	2 cut(s)	231, 436
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	96, 116
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	2 cut(s)	303, 342
FaiI	YATR	3 cut(s)	290, 301, 340
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	2 cut(s)	299, 338
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	156, 159
FokI	GGATG	2 cut(s)	438, 457
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	156, 159
FspBI	CTAG	1 cut(s)	464
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	2 cut(s)	156, 159
HaeIII	GGCC	5 cut(s)	57, 101, 137, 146, 205
HapII	CCGG	5 cut(s)	134, 142, 164, 313, 367
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	303, 342
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	3 cut(s)	128, 409, 414
HpaII	CCGG	5 cut(s)	134, 142, 164, 313, 367
HphI	GGTGA	2 cut(s)	29, 327
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	1 cut(s)	406
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	2 cut(s)	187, 328
HpyAV	CCTTC	2 cut(s)	325, 367
HpyCH4III	ACNGT	3 cut(s)	195, 242, 474
HpyCH4V	TGCA	3 cut(s)	77, 303, 338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 152, 169
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	303, 342
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	5 cut(s)	149, 218, 228, 341, 363
LguI	GCTCTTC	1 cut(s)	455
Lsp1109I	GCAGC	2 cut(s)	142, 145
LweI	GCATC	2 cut(s)	248, 435
MabI	ACCWGGT	1 cut(s)	116
MaeI	CTAG	1 cut(s)	464
MalI	GATC	5 cut(s)	151, 220, 230, 343, 365
MboI	GATC	5 cut(s)	149, 218, 228, 341, 363
MboII	GAAGA	3 cut(s)	84, 442, 447
MhlI	GDGCHC	2 cut(s)	29, 193
MlyI	GAGTC	3 cut(s)	137, 418, 423
MnlI	CCTC	4 cut(s)	27, 117, 381, 435
MslI	CAYNNNNRTG	2 cut(s)	196, 304
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	5 cut(s)	134, 142, 164, 313, 367
MspR9I	CCNGG	4 cut(s)	98, 118, 134, 143
MvaI	CCWGG	2 cut(s)	98, 118
MvnI	CGCG	1 cut(s)	223
MwoI	GCNNNNNNNGC	3 cut(s)	143, 152, 169
NciI	CCSGG	2 cut(s)	134, 143
NdeII	GATC	5 cut(s)	149, 218, 228, 341, 363
NlaIII	CATG	2 cut(s)	303, 342
NlaIV	GGNNCC	1 cut(s)	311
NmeAIII	GCCGAG	1 cut(s)	48
PceI	AGGCCT	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	157, 160
PleI	GAGTC	3 cut(s)	136, 417, 422
PpsI	GAGTC	3 cut(s)	136, 417, 422
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	96, 116
PspGI	CCWGG	2 cut(s)	96, 116
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	2 cut(s)	144, 203
RsaI	GTAC	1 cut(s)	462
RsaNI	GTAC	1 cut(s)	461
RseI	CAYNNNNRTG	2 cut(s)	196, 304
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	455
SatI	GCNGC	2 cut(s)	156, 159
Sau3AI	GATC	5 cut(s)	149, 218, 228, 341, 363
Sau96I	GGNCC	2 cut(s)	144, 203
ScaI	AGTACT	1 cut(s)	462
SchI	GAGTC	3 cut(s)	137, 418, 423
ScrFI	CCNGG	4 cut(s)	98, 118, 134, 143
SduI	GDGCHC	2 cut(s)	29, 193
SetI	ASST	8 cut(s)	12, 19, 29, 37, 53, 122, 218, 253
SexAI	ACCWGGT	1 cut(s)	116
SfaNI	GCATC	2 cut(s)	248, 435
SfiI	GGCCNNNNNGGCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	2 cut(s)	196, 304
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
SpeI	ACTAGT	1 cut(s)	463
SseBI	AGGCCT	1 cut(s)	101
SsiI	CCGC	2 cut(s)	153, 223
SspMI	CTAG	1 cut(s)	464
SstI	GAGCTC	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	101
StyD4I	CCNGG	4 cut(s)	96, 116, 132, 141
TaaI	ACNGT	3 cut(s)	195, 242, 474
TaqI	TCGA	3 cut(s)	122, 344, 412
TatI	WGTACW	1 cut(s)	460
TseI	GCWGC	2 cut(s)	155, 158
TspDTI	ATGAA	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	1 cut(s)	464
ZrmI	AGTACT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.