Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001280

Physical Location & Seq

Genomic Coordinates Reverse (-)

26117526 .. 26118457

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGAAGAACAAGCACGGCCTAAATGGCGAGGCAAGTCATCTGCTGAGGTGAAAGGCCATGCAGCACAAGAGGTGTGGCCTCTCCTGGCTGATTTCTGCAACCTACACAAAGTATTCCCCAGAGTCGAGAAATGTTACCAAATTGAGGGAGTCGCCGGCCAACCCGGTATGGTTCGATACTGCGCCGGATTTTCGAGCAATCACGACGAGTCGACGATCAAGTGGGCAAAAGAGAGATTAGTGATGATTGACCCGACCAAACGGTGCTTAAGCTACGAGGTCATTGATAGTAACATGGGGTTTAAGTCGTACGTAGCAACGATGCACGTAGTCCCGAGCAACGACGATGATAGCTCCATGATCGAGTGGTCGTTTGTTTGTGATCCGAACGAGGGAGGCAGAATGGAAGACGTTCAATCCTTTGGTGAATCTGCTCTTCAGTCCATAGCAAAGAAGATCGAGCATGTTCTTTCTTCTTGCAATTTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

164

Amino Acids

18.34

Weight (kDa)

5.54

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	14 - 152	2e-18	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32870
fragaria_vesca	FvH4_2g35410 FvH4_2g35420 FvH4_7g16550
malus_domestica	MD08G1112200.v1.1 MD08G1112400.v1.1 MD15G1091600.v1.1
prunus_persica	Prupe.1G446300_v2.0.a1 Prupe.1G446400_v2.0.a1 Prupe.1G446600_v2.0.a1
pyrus_communis	pycom08g09320 pycom08g09330
rosa_chinensis	RchiOBHm_Chr1g0359611 RchiOBHm_Chr6g0306471 RchiOBHm_Chr6g0306481 RchiOBHm_Chr6g0306491 RchiOBHm_Chr7g0223821
rosa_laevigata	RLG00000001927 RLG00000010792 RLG00000010793 RLG00000010794 RLG00000027858
rosa_multiflora	Rmu_co8209076.1_g000001 Rmu_sc0002971.1_g000012 Rmu_sc0002971.1_g000013 Rmu_sc0013097.1_g000009
rosa_roxburghii	Rroxscaffold_3G00235260 Rroxscaffold_4G00296890 Rroxscaffold_7G00161730 Rroxscaffold_7G00161740
rosa_rugosa	Rorug01G0272300 Rorug06G0349800 Rorug06G0349900 Rorug06G0349900 Rorug07G0220700
rosa_samantha	Rh1AG286000 Rh1BG252200 Rh1CG269400 Rh1DG281300 Rh6AG461900 Rh6AG462000 Rh6BG438800 Rh6BG438900 Rh6BG439100 Rh6CG476100 Rh6CG476300 Rh6DG462800 Rh6DG462900 Rh6DG463000 Rh7AG363400 Rh7BG354500 Rh7CG381800
rosa_wichuraiana	Rw1G025410 Rw6G040260 Rw6G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	212
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	145, 392
AflII	CTTAAG	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	416, 487
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	2 cut(s)	273, 354
AluI	AGCT	2 cut(s)	273, 354
AlwI	GGATC	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	334
AoxI	GGCC	4 cut(s)	17, 55, 77, 157
ApeKI	GCWGC	1 cut(s)	62
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	61, 437
AvaI	CYCGRG	1 cut(s)	334
BbsI	GAAGAC	1 cut(s)	414
BbvCI	CCTCAGC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	268
BglI	GCCNNNNNGGC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	86, 165
BmeT110I	CYCGRG	1 cut(s)	334
BmrFI	CCNGG	2 cut(s)	86, 165
BmsI	GCATC	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	45
BpuMI	CCSGG	1 cut(s)	165
BsaAI	YACGTR	2 cut(s)	313, 328
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 392
Bse118I	RCCGGY	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	145, 392
BseMII	CTCAG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	74
BshFI	GGCC	4 cut(s)	19, 57, 79, 159
BsiHKCI	CYCGRG	1 cut(s)	334
BsiSI	CCGG	3 cut(s)	156, 165, 186
BsiWI	CGTACG	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	2 cut(s)	145, 392
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	4 cut(s)	19, 57, 79, 159
BsoBI	CYCGRG	1 cut(s)	334
Bsp143I	GATC	4 cut(s)	216, 360, 382, 456
BspANI	GGCC	4 cut(s)	19, 57, 79, 159
BspCNI	CTCAG	1 cut(s)	37
BspPI	GGATC	1 cut(s)	377
BspQI	GCTCTTC	1 cut(s)	441
BspTI	CTTAAG	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssMI	GATC	4 cut(s)	216, 360, 382, 456
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	1 cut(s)	441
BstAFI	CTTAAG	1 cut(s)	268
BstBAI	YACGTR	2 cut(s)	313, 328
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	4 cut(s)	219, 363, 385, 459
BstMBI	GATC	4 cut(s)	216, 360, 382, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	84, 163
BstSNI	TACGTA	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	414
BsuRI	GGCC	4 cut(s)	19, 57, 79, 159
Cac8I	GCNNGC	1 cut(s)	157
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	310
CspCI	CAANNNNNGTGG	2 cut(s)	56, 91
CviAII	CATG	4 cut(s)	59, 295, 358, 464
CviJI	RGCY	7 cut(s)	19, 57, 79, 89, 159, 273, 354
CviKI_1	RGCY	7 cut(s)	19, 57, 79, 89, 159, 273, 354
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	4 cut(s)	218, 362, 384, 458
DpnII	GATC	4 cut(s)	216, 360, 382, 456
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	441
EarI	CTCTTC	1 cut(s)	441
Eco105I	TACGTA	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	84
FaeI	CATG	4 cut(s)	62, 298, 361, 467
FaiI	YATR	6 cut(s)	60, 170, 296, 359, 446, 465
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	4 cut(s)	58, 294, 357, 463
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	63
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	4 cut(s)	19, 57, 79, 159
HapII	CCGG	3 cut(s)	156, 165, 186
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	4 cut(s)	62, 298, 361, 467
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	4 cut(s)	123, 150, 209, 428
HpaII	CCGG	3 cut(s)	156, 165, 186
HphI	GGTGA	2 cut(s)	61, 437
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	1 cut(s)	387
Hpy188III	TCNNGA	3 cut(s)	127, 203, 334
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	3 cut(s)	209, 217, 347
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4IV	ACGT	3 cut(s)	312, 327, 411
HpyCH4V	TGCA	4 cut(s)	62, 99, 325, 480
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	3 cut(s)	312, 327, 411
Hsp92II	CATG	4 cut(s)	62, 298, 361, 467
HspAI	GCGC	1 cut(s)	183
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	216, 360, 382, 456
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	359
LpnPI	CCDG	6 cut(s)	71, 98, 133, 169, 178, 199
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	312
MaeII	ACGT	3 cut(s)	312, 327, 411
MaeIII	GTNAC	2 cut(s)	134, 290
MalI	GATC	4 cut(s)	218, 362, 384, 458
MboI	GATC	4 cut(s)	216, 360, 382, 456
MboII	GAAGA	5 cut(s)	17, 419, 428, 465, 466
MluCI	AATT	3 cut(s)	141, 481, 487
MlyI	GAGTC	3 cut(s)	132, 159, 218
MnlI	CCTC	8 cut(s)	23, 40, 64, 90, 139, 271, 385, 389
MroNI	GCCGGC	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	3 cut(s)	269, 303, 490
MspCI	CTTAAG	1 cut(s)	268
MspI	CCGG	3 cut(s)	156, 165, 186
MspR9I	CCNGG	2 cut(s)	86, 165
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	25
NaeI	GCCGGC	1 cut(s)	157
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	4 cut(s)	216, 360, 382, 456
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	4 cut(s)	62, 298, 361, 467
NspI	RCATGY	1 cut(s)	467
PciSI	GCTCTTC	1 cut(s)	441
PdiI	GCCGGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	428
Pfl23II	CGTACG	1 cut(s)	309
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	3 cut(s)	131, 158, 217
PpsI	GAGTC	3 cut(s)	131, 158, 217
Ppu21I	YACGTR	2 cut(s)	313, 328
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspLI	CGTACG	1 cut(s)	309
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SalI	GTCGAC	1 cut(s)	211
SapI	GCTCTTC	1 cut(s)	441
SaqAI	TTAA	3 cut(s)	269, 303, 490
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	4 cut(s)	216, 360, 382, 456
SchI	GAGTC	3 cut(s)	132, 159, 218
ScrFI	CCNGG	2 cut(s)	86, 165
SetI	ASST	9 cut(s)	51, 75, 105, 275, 282, 315, 330, 356, 414
SfaNI	GCATC	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SnaBI	TACGTA	1 cut(s)	313
Sse9I	AATT	3 cut(s)	141, 481, 487
StyD4I	CCNGG	2 cut(s)	84, 163
TaaI	ACNGT	1 cut(s)	264
TaiI	ACGT	3 cut(s)	315, 330, 414
TaqI	TCGA	6 cut(s)	126, 175, 194, 212, 363, 459
TasI	AATT	3 cut(s)	141, 481, 487
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	3 cut(s)	269, 303, 490
Tru9I	TTAA	3 cut(s)	269, 303, 490
TseI	GCWGC	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	268
XceI	RCATGY	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.