Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001280

Physical Location & Seq

Genomic Coordinates Forward (+)

37762460 .. 37763216

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G446300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCAAGAACAAACACAGCCAAAATGGGAAGGCAGAACCTCTGCTGACCTAAAAGGTCCAGCAGCTGAGCAAGTTTGGCCTCTCTTGGCTGATTTCTGCAACCTACACAAGTGGTTCCCCAAACTTGAGACATCTTACCAAGTTGGGGGAATTCTTGGCCAGCCGGGTCTGATCCGGTACTGCGCAACTCCCCCTGCTGATCCTGACGATCAGACGACCATCAAGTGGGTCAAGGAGAAGCTACTGATGATAGATCCAATCAAACGGTGTTTAAGCTATGAGATCCTTGAGAACAACATGGGATTTCACTCATATGTTGGCACAATGCAAGTAGTGCCCATACACGACATTCATCATGATGTCGTTCTTGGGTGCAAGATCGAGTGGTGGGTTGTTTGTGATCCGGTTGATGGATGGAGGTTGGAAAACCTTCTTGATTTTCTTGAGTCTTCTCTCCCGTTGGTAGCAAAAACAATGGAGCATGCTCTTCTTTCTACTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

168

Amino Acids

19.01

Weight (kDa)

5.13

Isoelectric Point (pI)

25.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32870
fragaria_vesca	FvH4_2g35410 FvH4_2g35420 FvH4_7g16550
malus_domestica	MD08G1112200.v1.1 MD08G1112400.v1.1 MD15G1091600.v1.1
prunus_persica	Prupe.1G446300_v2.0.a1 Prupe.1G446400_v2.0.a1 Prupe.1G446600_v2.0.a1
pyrus_communis	pycom08g09320 pycom08g09330
rosa_chinensis	RchiOBHm_Chr1g0359611 RchiOBHm_Chr6g0306471 RchiOBHm_Chr6g0306481 RchiOBHm_Chr6g0306491 RchiOBHm_Chr7g0223821
rosa_laevigata	RLG00000001927 RLG00000010792 RLG00000010793 RLG00000010794 RLG00000027858
rosa_multiflora	Rmu_co8209076.1_g000001 Rmu_sc0002971.1_g000012 Rmu_sc0002971.1_g000013 Rmu_sc0013097.1_g000009
rosa_roxburghii	Rroxscaffold_3G00235260 Rroxscaffold_4G00296890 Rroxscaffold_7G00161730 Rroxscaffold_7G00161740
rosa_rugosa	Rorug01G0272300 Rorug06G0349800 Rorug06G0349900 Rorug06G0349900 Rorug07G0220700
rosa_samantha	Rh1AG286000 Rh1BG252200 Rh1CG269400 Rh1DG281300 Rh6AG461900 Rh6AG462000 Rh6BG438800 Rh6BG438900 Rh6BG439100 Rh6CG476100 Rh6CG476300 Rh6DG462800 Rh6DG462900 Rh6DG463000 Rh7AG363400 Rh7BG354500 Rh7CG381800
rosa_wichuraiana	Rw1G025410 Rw6G040260 Rw6G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	184
AccB7I	CCANNNNNTGG	1 cut(s)	225
AclWI	GGATC	5 cut(s)	166, 194, 248, 277, 395
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	1 cut(s)	150
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	3 cut(s)	145, 225, 410
AluBI	AGCT	4 cut(s)	65, 241, 276, 501
AluI	AGCT	4 cut(s)	65, 241, 276, 501
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	5 cut(s)	166, 194, 248, 277, 395
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	2 cut(s)	77, 157
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	150
Asp700I	GAANNNNTTC	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	56
AsuC2I	CCSGG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	339
BalI	TGGCCA	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	3 cut(s)	227, 404, 408
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	498
BisI	GCNGC	1 cut(s)	63
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	3 cut(s)	146, 308, 464
BpuMI	CCSGG	1 cut(s)	165
BsaWI	WCCGGW	2 cut(s)	174, 403
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 225, 410
BseGI	GGATG	1 cut(s)	419
BseLI	CCNNNNNNNGG	3 cut(s)	145, 225, 410
BseMII	CTCAG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	74
BshFI	GGCC	2 cut(s)	79, 159
BsiSI	CCGG	3 cut(s)	164, 175, 404
BslI	CCNNNNNNNGG	3 cut(s)	145, 225, 410
BsmAI	GTCTC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	79, 159
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	7 cut(s)	171, 199, 208, 253, 282, 378, 400
Bsp1720I	GCTNAGC	1 cut(s)	66
BspANI	GGCC	2 cut(s)	79, 159
BspCNI	CTCAG	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	116
BspPI	GGATC	5 cut(s)	166, 194, 248, 277, 395
BspQI	GCTCTTC	1 cut(s)	492
BssMI	GATC	7 cut(s)	171, 199, 208, 253, 282, 378, 400
Bst4CI	ACNGT	1 cut(s)	267
Bst6I	CTCTTC	1 cut(s)	492
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	161, 483
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	7 cut(s)	174, 202, 211, 256, 285, 381, 403
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	7 cut(s)	171, 199, 208, 253, 282, 378, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 334
BstNSI	RCATGY	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	2 cut(s)	253, 282
BstYI	RGATCY	2 cut(s)	253, 282
BsuRI	GGCC	2 cut(s)	79, 159
BtsCI	GGATG	1 cut(s)	419
Cac8I	GCNNGC	2 cut(s)	161, 483
CaiI	CAGNNNCTG	1 cut(s)	65
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	3 cut(s)	298, 356, 482
CviJI	RGCY	9 cut(s)	19, 65, 79, 89, 159, 163, 241, 276, 501
CviKI_1	RGCY	9 cut(s)	19, 65, 79, 89, 159, 163, 241, 276, 501
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	7 cut(s)	173, 201, 210, 255, 284, 380, 402
DpnII	GATC	7 cut(s)	171, 199, 208, 253, 282, 378, 400
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	150
FaeI	CATG	3 cut(s)	301, 359, 485
FaiI	YATR	7 cut(s)	279, 299, 313, 315, 341, 357, 483
FatI	CATG	3 cut(s)	297, 355, 481
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	426
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	498
FspI	TGCGCA	1 cut(s)	184
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	79, 159
HapII	CCGG	3 cut(s)	164, 175, 404
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	301, 359, 485
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	446
HpaII	CCGG	3 cut(s)	164, 175, 404
Hpy188I	TCNGA	2 cut(s)	171, 213
Hpy188III	TCNNGA	4 cut(s)	203, 356, 434, 443
HpyAV	CCTTC	2 cut(s)	23, 440
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4V	TGCA	4 cut(s)	4, 99, 328, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 334
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	301, 359, 485
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	7 cut(s)	171, 199, 208, 253, 282, 378, 400
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	1 cut(s)	478
LpnPI	CCDG	7 cut(s)	72, 173, 177, 188, 207, 216, 417
Lsp1109I	GCAGC	1 cut(s)	74
MaeI	CTAG	1 cut(s)	498
MalI	GATC	7 cut(s)	173, 201, 210, 255, 284, 380, 402
MboI	GATC	7 cut(s)	171, 199, 208, 253, 282, 378, 400
MboII	GAAGA	2 cut(s)	441, 479
MflI	RGATCY	2 cut(s)	253, 282
MhlI	GDGCHC	1 cut(s)	339
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	1 cut(s)	150
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	3 cut(s)	49, 90, 411
Mox20I	TGGCCA	1 cut(s)	159
MroXI	GAANNNNTTC	1 cut(s)	429
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	2 cut(s)	312, 357
Msp20I	TGGCCA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	3 cut(s)	164, 175, 404
MspR9I	CCNGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	76, 334
NciI	CCSGG	1 cut(s)	165
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	7 cut(s)	171, 199, 208, 253, 282, 378, 400
NlaIII	CATG	3 cut(s)	301, 359, 485
NlaIV	GGNNCC	1 cut(s)	116
NsbI	TGCGCA	1 cut(s)	184
NspI	RCATGY	1 cut(s)	485
PaeI	GCATGC	1 cut(s)	485
PagI	TCATGA	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	429
PflMI	CCANNNNNTGG	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	56
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	2 cut(s)	253, 282
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	2 cut(s)	312, 357
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	7 cut(s)	171, 199, 208, 253, 282, 378, 400
Sau96I	GGNCC	1 cut(s)	56
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	1 cut(s)	339
SinI	GGWCC	1 cut(s)	56
SmiMI	CAYNNNNRTG	2 cut(s)	312, 357
SmlI	CTYRAG	3 cut(s)	125, 287, 443
SmoI	CTYRAG	3 cut(s)	125, 287, 443
SphI	GCATGC	1 cut(s)	485
Sse9I	AATT	1 cut(s)	150
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	381
TasI	AATT	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	341
Van91I	CCANNNNNTGG	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	150
XceI	RCATGY	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.