Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001280

Physical Location & Seq

Genomic Coordinates Forward (+)

23136695 .. 23138260

Gene Structure 1566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAGTCGCCGCTGGTTACGACGTTCAAAGAGATTTGGCGGAAGCACCATCCGATTCGGAAGGAACCTGAACAGCCAAAATGGGGAGGCCAAACCTCTGCCAAGCTCAAAGGCTCAAAAGCGCAAGAGGTTTGGCCTCTCCTGGCAGACTTCTGCAACATGGACAAGTGGTTCCCCGGCCTCCACACTTGCTACCAAGTTAGCGGAGTTCCTGGCCAACCCGGTCTGGTTCGGTACTGCGAGAGCGGCACGGATGAGACAACTATCCTGTGGGCAAAAGAGAAGCTACTCACGATCGACCCAATCAACCAGTGTATGACCTACGAGATTGTTGACAACAATATGGGTTTCGAGTCGTATGTTGCAACAATGCAAGTAGTCCCTATCAACAACCATGGCTGCAAGATCGAGTGGTCGTTTGTTTGTGATCAGATTGAGGGCACGAGTTTGGAAGATCTCCAATCTTTCGTTGAGTCTTCACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

162

Amino Acids

18.31

Weight (kDa)

5.06

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	41 - 146	2.1e-19	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32870
fragaria_vesca	FvH4_2g35410 FvH4_2g35420 FvH4_7g16550
malus_domestica	MD08G1112200.v1.1 MD08G1112400.v1.1 MD15G1091600.v1.1
prunus_persica	Prupe.1G446300_v2.0.a1 Prupe.1G446400_v2.0.a1 Prupe.1G446600_v2.0.a1
pyrus_communis	pycom08g09320 pycom08g09330
rosa_chinensis	RchiOBHm_Chr1g0359611 RchiOBHm_Chr6g0306471 RchiOBHm_Chr6g0306481 RchiOBHm_Chr6g0306491 RchiOBHm_Chr7g0223821
rosa_laevigata	RLG00000001927 RLG00000010792 RLG00000010793 RLG00000010794 RLG00000027858
rosa_multiflora	Rmu_co8209076.1_g000001 Rmu_sc0002971.1_g000012 Rmu_sc0002971.1_g000013 Rmu_sc0013097.1_g000009
rosa_roxburghii	Rroxscaffold_3G00235260 Rroxscaffold_4G00296890 Rroxscaffold_7G00161730 Rroxscaffold_7G00161740
rosa_rugosa	Rorug01G0272300 Rorug06G0349800 Rorug06G0349900 Rorug06G0349900 Rorug07G0220700
rosa_samantha	Rh1AG286000 Rh1BG252200 Rh1CG269400 Rh1DG281300 Rh6AG461900 Rh6AG462000 Rh6BG438800 Rh6BG438900 Rh6BG439100 Rh6CG476100 Rh6CG476300 Rh6DG462800 Rh6DG462900 Rh6DG463000 Rh7AG363400 Rh7BG354500 Rh7CG381800
rosa_wichuraiana	Rw1G025410 Rw6G040260 Rw6G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	246
AciI	CCGC	4 cut(s)	11, 40, 204, 246
AcoI	YGGCCR	1 cut(s)	214
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	141, 211
AloI	GAACNNNNNNTCC	2 cut(s)	155, 187
AluBI	AGCT	2 cut(s)	106, 286
AluI	AGCT	2 cut(s)	106, 286
Alw26I	GTCTC	1 cut(s)	251
AoxI	GGCC	4 cut(s)	88, 134, 178, 214
ApeKI	GCWGC	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	124
AsuC2I	CCSGG	2 cut(s)	177, 222
BaeGI	GKGCMC	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	216
BauI	CACGAG	1 cut(s)	442
BbsI	GAAGAC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	1 cut(s)	57
BciT130I	CCWGG	2 cut(s)	143, 213
BclI	TGATCA	1 cut(s)	427
BcnI	CCSGG	2 cut(s)	177, 222
BcoDI	GTCTC	1 cut(s)	251
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	3 cut(s)	11, 247, 400
BlsI	GCNGC	3 cut(s)	12, 248, 401
Bme1390I	CCNGG	4 cut(s)	143, 177, 213, 222
BmiI	GGNNCC	2 cut(s)	66, 173
BmrFI	CCNGG	4 cut(s)	143, 177, 213, 222
BpiI	GAAGAC	1 cut(s)	468
BpuMI	CCSGG	2 cut(s)	177, 222
BsaJI	CCNNGG	2 cut(s)	175, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	2 cut(s)	143, 213
BseDI	CCNNGG	2 cut(s)	175, 394
BseGI	GGATG	2 cut(s)	49, 259
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	1 cut(s)	386
Bsh1285I	CGRYCG	1 cut(s)	297
BshFI	GGCC	4 cut(s)	90, 136, 180, 216
BsiEI	CGRYCG	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	177, 222
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	4 cut(s)	90, 136, 180, 216
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp143I	GATC	4 cut(s)	294, 405, 427, 454
Bsp19I	CCATGG	1 cut(s)	394
BspACI	CCGC	4 cut(s)	11, 40, 204, 246
BspANI	GGCC	4 cut(s)	90, 136, 180, 216
BspLI	GGNNCC	2 cut(s)	66, 173
BsrBI	CCGCTC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	175, 394
BssMI	GATC	4 cut(s)	294, 405, 427, 454
BssSI	CACGAG	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	394
Bst2BI	CACGAG	1 cut(s)	442
Bst2UI	CCWGG	2 cut(s)	143, 213
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	2 cut(s)	49, 259
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	4 cut(s)	297, 408, 430, 457
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	4 cut(s)	294, 405, 427, 454
BstMCI	CGRYCG	1 cut(s)	297
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	2 cut(s)	143, 213
BstSCI	CCNGG	4 cut(s)	141, 175, 211, 220
BstSLI	GKGCMC	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	386
BstV2I	GAAGAC	1 cut(s)	468
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuRI	GGCC	4 cut(s)	90, 136, 180, 216
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	49, 259
BtsIMutI	CAGTG	1 cut(s)	317
CfoI	GCGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	2 cut(s)	160, 395
CviJI	RGCY	9 cut(s)	76, 90, 106, 114, 136, 180, 216, 286, 399
CviKI_1	RGCY	9 cut(s)	76, 90, 106, 114, 136, 180, 216, 286, 399
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	4 cut(s)	296, 407, 429, 456
DpnII	GATC	4 cut(s)	294, 405, 427, 454
EaeI	YGGCCR	1 cut(s)	214
EciI	GGCGGA	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	141, 211
EcoT14I	CCWWGG	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	2 cut(s)	163, 398
FaiI	YATR	5 cut(s)	161, 317, 344, 360, 396
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	2 cut(s)	159, 394
FbaI	TGATCA	1 cut(s)	427
Fnu4HI	GCNGC	3 cut(s)	11, 247, 400
FokI	GGATG	2 cut(s)	36, 266
Fsp4HI	GCNGC	3 cut(s)	11, 247, 400
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	3 cut(s)	11, 247, 400
HaeIII	GGCC	4 cut(s)	90, 136, 180, 216
HapII	CCGG	2 cut(s)	177, 222
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	2 cut(s)	163, 398
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	4 cut(s)	5, 55, 353, 473
HpaII	CCGG	2 cut(s)	177, 222
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	3 cut(s)	54, 60, 432
Hpy188III	TCNNGA	1 cut(s)	292
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	156, 365, 373, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	163, 398
HspAI	GCGC	1 cut(s)	122
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	294, 405, 427, 454
Lsp1109I	GCAGC	1 cut(s)	386
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	4 cut(s)	296, 407, 429, 456
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	4 cut(s)	294, 405, 427, 454
MboII	GAAGA	2 cut(s)	464, 468
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	443
MlsI	TGGCCA	1 cut(s)	216
MluNI	TGGCCA	1 cut(s)	216
MlyI	GAGTC	3 cut(s)	14, 362, 482
MnlI	CCTC	6 cut(s)	80, 106, 121, 147, 191, 430
Mox20I	TGGCCA	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	2 cut(s)	177, 222
MspR9I	CCNGG	4 cut(s)	143, 177, 213, 222
MvaI	CCWGG	2 cut(s)	143, 213
MwoI	GCNNNNNNNGC	1 cut(s)	246
NciI	CCSGG	2 cut(s)	177, 222
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	4 cut(s)	294, 405, 427, 454
NlaIII	CATG	2 cut(s)	163, 398
NlaIV	GGNNCC	2 cut(s)	66, 173
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	3 cut(s)	12, 248, 401
Ple19I	CGATCG	1 cut(s)	297
PleI	GAGTC	3 cut(s)	13, 361, 481
PpsI	GAGTC	3 cut(s)	13, 361, 481
Psp6I	CCWGG	2 cut(s)	141, 211
PspGI	CCWGG	2 cut(s)	141, 211
PspN4I	GGNNCC	2 cut(s)	66, 173
PsuI	RGATCY	1 cut(s)	454
PvuI	CGATCG	1 cut(s)	297
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SatI	GCNGC	3 cut(s)	11, 247, 400
Sau3AI	GATC	4 cut(s)	294, 405, 427, 454
SchI	GAGTC	3 cut(s)	14, 362, 482
ScrFI	CCNGG	4 cut(s)	143, 177, 213, 222
SduI	GDGCHC	1 cut(s)	443
SetI	ASST	7 cut(s)	26, 70, 98, 108, 132, 288, 323
SsiI	CCGC	4 cut(s)	11, 40, 204, 246
StyD4I	CCNGG	4 cut(s)	141, 175, 211, 220
StyI	CCWWGG	1 cut(s)	394
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	297, 351, 408
TauI	GCSGC	2 cut(s)	13, 249
TfiI	GAWTC	1 cut(s)	55
TscAI	CASTG	1 cut(s)	317
TseI	GCWGC	1 cut(s)	399
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.