Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001280

Physical Location & Seq

Genomic Coordinates Reverse (-)

48111078 .. 48111747

Gene Structure 670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG381800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCATTAGAAGAACCTGAACAGCCAAAATGGGGAGGCCAAACCTCTGCCAAGCTCAAAGGCTCAAAAGCGCAGGAGGTTTGGCCTCTCCTGGCGGACTTCTGCAACATGGACAAGTGGTTCCCCGGCCTCCACACTTGCTACCAAGTTGGCGGAGTTCCTGGCCAACCCGGTCTGGTTCGGTACTGCGAGCGCGGCACGGATGAGACAACTATCCTGTGGGCAAAAGAGAAGCTACTCACGATCGACCCAATCAACCAGTGTATGACCTACGAGATTGTTGACAACAATATGGGTTTCGAGTCGTATGTTGCAACAATGCAAGTAGTCCCTATCAACAACCATGGCTGCAAGATCGAGTGGTCGTTTGTTTGTGATCAGATTGAGGGCACGAGTTTGGAAGATCTCCAATCTTTCGTTGAGTCTTCACTCCAAGGGATAGAAAAGAAGATGGAGCTTGCTCTTCTATCTAATACTCAAGTAGTAGAAGATATCTTGTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

168

Amino Acids

18.91

Weight (kDa)

4.47

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	24 - 149	2.4e-20	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32870
fragaria_vesca	FvH4_2g35410 FvH4_2g35420 FvH4_7g16550
malus_domestica	MD08G1112200.v1.1 MD08G1112400.v1.1 MD15G1091600.v1.1
prunus_persica	Prupe.1G446300_v2.0.a1 Prupe.1G446400_v2.0.a1 Prupe.1G446600_v2.0.a1
pyrus_communis	pycom08g09320 pycom08g09330
rosa_chinensis	RchiOBHm_Chr1g0359611 RchiOBHm_Chr6g0306471 RchiOBHm_Chr6g0306481 RchiOBHm_Chr6g0306491 RchiOBHm_Chr7g0223821
rosa_laevigata	RLG00000001927 RLG00000010792 RLG00000010793 RLG00000010794 RLG00000027858
rosa_multiflora	Rmu_co8209076.1_g000001 Rmu_sc0002971.1_g000012 Rmu_sc0002971.1_g000013 Rmu_sc0013097.1_g000009
rosa_roxburghii	Rroxscaffold_3G00235260 Rroxscaffold_4G00296890 Rroxscaffold_7G00161730 Rroxscaffold_7G00161740
rosa_rugosa	Rorug01G0272300 Rorug06G0349800 Rorug06G0349900 Rorug06G0349900 Rorug07G0220700
rosa_samantha	Rh1AG286000 Rh1BG252200 Rh1CG269400 Rh1DG281300 Rh6AG461900 Rh6AG462000 Rh6BG438800 Rh6BG438900 Rh6BG439100 Rh6CG476100 Rh6CG476300 Rh6DG462800 Rh6DG462900 Rh6DG463000 Rh7AG363400 Rh7BG354500 Rh7CG381800
rosa_wichuraiana	Rw1G025410 Rw6G040260 Rw6G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	195
AciI	CCGC	3 cut(s)	95, 153, 195
AcoI	YGGCCR	1 cut(s)	163
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	32
AjnI	CCWGG	2 cut(s)	90, 160
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
AluBI	AGCT	3 cut(s)	55, 235, 457
AluI	AGCT	3 cut(s)	55, 235, 457
Alw26I	GTCTC	1 cut(s)	200
AoxI	GGCC	4 cut(s)	37, 83, 127, 163
ApeKI	GCWGC	1 cut(s)	348
AspLEI	GCGC	2 cut(s)	73, 195
AsuC2I	CCSGG	2 cut(s)	126, 171
BaeGI	GKGCMC	1 cut(s)	392
BalI	TGGCCA	1 cut(s)	165
BauI	CACGAG	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	1 cut(s)	445
BciT130I	CCWGG	2 cut(s)	92, 162
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	2 cut(s)	126, 171
BcoDI	GTCTC	1 cut(s)	200
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	2 cut(s)	196, 349
BlsI	GCNGC	2 cut(s)	197, 350
Bme1390I	CCNGG	4 cut(s)	92, 126, 162, 171
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	4 cut(s)	92, 126, 162, 171
BpiI	GAAGAC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	462
BpuMI	CCSGG	2 cut(s)	126, 171
BsaJI	CCNNGG	3 cut(s)	124, 343, 433
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	259
BseBI	CCWGG	2 cut(s)	92, 162
BseDI	CCNNGG	3 cut(s)	124, 343, 433
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	259
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	4 cut(s)	39, 85, 129, 165
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	126, 171
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	4 cut(s)	39, 85, 129, 165
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	4 cut(s)	243, 354, 376, 403
Bsp19I	CCATGG	1 cut(s)	343
BspACI	CCGC	3 cut(s)	95, 153, 195
BspANI	GGCC	4 cut(s)	39, 85, 129, 165
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	122
BspQI	GCTCTTC	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	3 cut(s)	124, 343, 433
BssMI	GATC	4 cut(s)	243, 354, 376, 403
BssSI	CACGAG	1 cut(s)	391
BssT1I	CCWWGG	2 cut(s)	343, 433
Bst2BI	CACGAG	1 cut(s)	391
Bst2UI	CCWGG	2 cut(s)	92, 162
Bst6I	CTCTTC	1 cut(s)	468
BstC8I	GCNNGC	2 cut(s)	191, 459
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	195
BstHHI	GCGC	2 cut(s)	73, 195
BstKTI	GATC	4 cut(s)	246, 357, 379, 406
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	4 cut(s)	243, 354, 376, 403
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstNI	CCWGG	2 cut(s)	92, 162
BstSCI	CCNGG	4 cut(s)	90, 124, 160, 169
BstSLI	GKGCMC	1 cut(s)	392
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	335
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	4 cut(s)	39, 85, 129, 165
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	2 cut(s)	191, 459
CfoI	GCGC	2 cut(s)	73, 195
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	3 cut(s)	109, 344, 502
CviQI	GTAC	1 cut(s)	184
DpnI	GATC	4 cut(s)	245, 356, 378, 405
DpnII	GATC	4 cut(s)	243, 354, 376, 403
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
EciI	GGCGGA	2 cut(s)	110, 168
Eco130I	CCWWGG	2 cut(s)	343, 433
Eco32I	GATATC	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	90, 160
EcoRV	GATATC	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	343, 433
ErhI	CCWWGG	2 cut(s)	343, 433
FaeI	CATG	3 cut(s)	112, 347, 505
FaiI	YATR	6 cut(s)	110, 266, 293, 309, 345, 503
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	3 cut(s)	108, 343, 501
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	2 cut(s)	196, 349
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	196, 349
GlaI	GCGC	2 cut(s)	72, 194
GluI	GCNGC	2 cut(s)	196, 349
HaeIII	GGCC	4 cut(s)	39, 85, 129, 165
HapII	CCGG	2 cut(s)	126, 171
HhaI	GCGC	2 cut(s)	73, 195
Hin1II	CATG	3 cut(s)	112, 347, 505
Hin6I	GCGC	2 cut(s)	71, 193
HinP1I	GCGC	2 cut(s)	71, 193
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	2 cut(s)	302, 422
HpaII	CCGG	2 cut(s)	126, 171
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	381
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	1 cut(s)	283
HpyCH4V	TGCA	4 cut(s)	105, 314, 322, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
Hsp92II	CATG	3 cut(s)	112, 347, 505
HspAI	GCGC	2 cut(s)	71, 193
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	4 cut(s)	243, 354, 376, 403
LguI	GCTCTTC	1 cut(s)	468
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	1 cut(s)	335
MalI	GATC	4 cut(s)	245, 356, 378, 405
MboI	GATC	4 cut(s)	243, 354, 376, 403
MboII	GAAGA	6 cut(s)	23, 413, 417, 455, 460, 500
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	392
MlsI	TGGCCA	1 cut(s)	165
MluNI	TGGCCA	1 cut(s)	165
MlyI	GAGTC	2 cut(s)	311, 431
MnlI	CCTC	6 cut(s)	29, 55, 70, 96, 140, 379
Mox20I	TGGCCA	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	165
Msp20I	TGGCCA	1 cut(s)	165
MspI	CCGG	2 cut(s)	126, 171
MspR9I	CCNGG	4 cut(s)	92, 126, 162, 171
MvaI	CCWGG	2 cut(s)	92, 162
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	195
NciI	CCSGG	2 cut(s)	126, 171
NcoI	CCATGG	1 cut(s)	343
NdeII	GATC	4 cut(s)	243, 354, 376, 403
NlaIII	CATG	3 cut(s)	112, 347, 505
NlaIV	GGNNCC	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	468
PkrI	GCNGC	2 cut(s)	197, 350
Ple19I	CGATCG	1 cut(s)	246
PleI	GAGTC	2 cut(s)	310, 430
PpsI	GAGTC	2 cut(s)	310, 430
Psp6I	CCWGG	2 cut(s)	90, 160
PspGI	CCWGG	2 cut(s)	90, 160
PspN4I	GGNNCC	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	403
PvuI	CGATCG	1 cut(s)	246
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	468
SatI	GCNGC	2 cut(s)	196, 349
Sau3AI	GATC	4 cut(s)	243, 354, 376, 403
SchI	GAGTC	2 cut(s)	311, 431
ScrFI	CCNGG	4 cut(s)	92, 126, 162, 171
SduI	GDGCHC	1 cut(s)	392
SetI	ASST	7 cut(s)	19, 47, 57, 81, 237, 272, 459
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
SsiI	CCGC	3 cut(s)	95, 153, 195
StyD4I	CCNGG	4 cut(s)	90, 124, 160, 169
StyI	CCWWGG	2 cut(s)	343, 433
TaqI	TCGA	3 cut(s)	246, 300, 357
TauI	GCSGC	1 cut(s)	198
TscAI	CASTG	1 cut(s)	266
TseI	GCWGC	1 cut(s)	348
TspDTI	ATGAA	1 cut(s)	490
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.