Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001280

Physical Location & Seq

Genomic Coordinates Forward (+)

64118594 .. 64121772

Gene Structure 3179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G040270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGGATCAGAAGGTCAAGCACAGCCGAAATGGGAAGGCAAAACCTCAGCCGAGCTCAAAAGCTCACCAGCACAACAGGTCTGGCCTTTCCTAGCCGATTTCTGCAACTTACAAGAAGTCTTACCAGGCCTTGAAACTTGCTACCAAGTCGAGGGAGTCCCCGGCCAGCCGGGCCTGATCCGCTGCTGCGCCGGACTGGCTGCCAATAACGACGAGAGCACCGTAATGTGGGCCAAAGAGAAGCTGATCGTGGTTGATCCAATCAAACGGTGCTTCAGCTACCAGATGCTTGAGAATAACAAGGGGTACAAGTCTTATGTTGCAACCATGCAAGTGGTTCCGGTGATAAACGACGATGAAGGGTGCATGATCGAGTGGTCGTTTGTTTCTGATCCGGTGGAAGGGTGGGGATTGGAGGAGTTTCAGTCTTTTCGTGAGTCGAGTCTACAAGGGATGGCAAAGAAGATTGAGGATGCTCTTCAGTCCAGTACTAGTGCTACCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

168

Amino Acids

18.54

Weight (kDa)

4.46

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	22 - 156	1.6e-18	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32870
fragaria_vesca	FvH4_2g35410 FvH4_2g35420 FvH4_7g16550
malus_domestica	MD08G1112200.v1.1 MD08G1112400.v1.1 MD15G1091600.v1.1
prunus_persica	Prupe.1G446300_v2.0.a1 Prupe.1G446400_v2.0.a1 Prupe.1G446600_v2.0.a1
pyrus_communis	pycom08g09320 pycom08g09330
rosa_chinensis	RchiOBHm_Chr1g0359611 RchiOBHm_Chr6g0306471 RchiOBHm_Chr6g0306481 RchiOBHm_Chr6g0306491 RchiOBHm_Chr7g0223821
rosa_laevigata	RLG00000001927 RLG00000010792 RLG00000010793 RLG00000010794 RLG00000027858
rosa_multiflora	Rmu_co8209076.1_g000001 Rmu_sc0002971.1_g000012 Rmu_sc0002971.1_g000013 Rmu_sc0013097.1_g000009
rosa_roxburghii	Rroxscaffold_3G00235260 Rroxscaffold_4G00296890 Rroxscaffold_7G00161730 Rroxscaffold_7G00161740
rosa_rugosa	Rorug01G0272300 Rorug06G0349800 Rorug06G0349900 Rorug06G0349900 Rorug07G0220700
rosa_samantha	Rh1AG286000 Rh1BG252200 Rh1CG269400 Rh1DG281300 Rh6AG461900 Rh6AG462000 Rh6BG438800 Rh6BG438900 Rh6BG439100 Rh6CG476100 Rh6CG476300 Rh6DG462800 Rh6DG462900 Rh6DG463000 Rh7AG363400 Rh7BG354500 Rh7CG381800
rosa_wichuraiana	Rw1G025410 Rw6G040260 Rw6G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	445
AciI	CCGC	1 cut(s)	181
AclWI	GGATC	4 cut(s)	13, 172, 251, 386
AcoI	YGGCCR	1 cut(s)	163
AcuI	CTGAAG	2 cut(s)	259, 464
AfaI	GTAC	2 cut(s)	308, 490
AfiI	CCNNNNNNNGG	3 cut(s)	151, 228, 401
AgsI	TTSAA	1 cut(s)	134
AhlI	ACTAGT	1 cut(s)	491
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	4 cut(s)	55, 63, 244, 279
AluI	AGCT	4 cut(s)	55, 63, 244, 279
Alw21I	GWGCWC	2 cut(s)	57, 221
AlwI	GGATC	4 cut(s)	13, 172, 251, 386
AoxI	GGCC	5 cut(s)	83, 127, 163, 172, 231
ApeKI	GCWGC	3 cut(s)	183, 186, 200
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	172, 231
AsuC2I	CCSGG	2 cut(s)	162, 171
AsuHPI	GGTGA	2 cut(s)	57, 355
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	2 cut(s)	57, 221
BbvCI	CCTCAGC	1 cut(s)	46
BbvI	GCAGC	3 cut(s)	170, 173, 187
BccI	CCATC	1 cut(s)	448
BciT130I	CCWGG	1 cut(s)	126
BcnI	CCSGG	2 cut(s)	162, 171
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	2 cut(s)	92, 492
BglI	GCCNNNNNGGC	2 cut(s)	171, 197
BisI	GCNGC	3 cut(s)	184, 187, 201
BlsI	GCNGC	3 cut(s)	185, 188, 202
BmcAI	AGTACT	1 cut(s)	490
Bme1390I	CCNGG	3 cut(s)	126, 162, 171
BmgT120I	GGNCC	2 cut(s)	172, 231
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	3 cut(s)	126, 162, 171
BmsI	GCATC	2 cut(s)	276, 463
Bpu10I	CCTNAGC	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	2 cut(s)	162, 171
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	2 cut(s)	340, 394
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 228, 401
Bse1I	ACTGG	2 cut(s)	201, 486
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	2 cut(s)	459, 478
BseLI	CCNNNNNNNGG	3 cut(s)	151, 228, 401
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	201, 486
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	3 cut(s)	170, 173, 187
BshFI	GGCC	5 cut(s)	85, 129, 165, 174, 233
BsiHKAI	GWGCWC	2 cut(s)	57, 221
BsiSI	CCGG	5 cut(s)	162, 170, 192, 341, 395
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	3 cut(s)	151, 228, 401
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	5 cut(s)	85, 129, 165, 174, 233
Bsp1286I	GDGCHC	2 cut(s)	57, 221
Bsp143I	GATC	6 cut(s)	5, 177, 246, 256, 369, 391
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	5 cut(s)	85, 129, 165, 174, 233
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	4 cut(s)	13, 172, 251, 386
BspQI	GCTCTTC	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	201, 486
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	6 cut(s)	5, 177, 246, 256, 369, 391
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	3 cut(s)	223, 270, 502
Bst6I	CTCTTC	1 cut(s)	483
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	46
BstF5I	GGATG	2 cut(s)	459, 478
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	6 cut(s)	8, 180, 249, 259, 372, 394
BstMBI	GATC	6 cut(s)	5, 177, 246, 256, 369, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 180, 197
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	3 cut(s)	124, 160, 169
BstV1I	GCAGC	3 cut(s)	170, 173, 187
BstXI	CCANNNNNNTGG	1 cut(s)	334
BsuRI	GGCC	5 cut(s)	85, 129, 165, 174, 233
BtsCI	GGATG	2 cut(s)	459, 478
Cac8I	GCNNGC	1 cut(s)	167
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	172, 231
Csp6I	GTAC	2 cut(s)	307, 489
CviAII	CATG	2 cut(s)	328, 367
CviQI	GTAC	2 cut(s)	307, 489
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	6 cut(s)	7, 179, 248, 258, 371, 393
DpnII	GATC	6 cut(s)	5, 177, 246, 256, 369, 391
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Ecl136II	GAGCTC	1 cut(s)	55
Eco147I	AGGCCT	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	2 cut(s)	259, 464
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	2 cut(s)	331, 370
FaiI	YATR	3 cut(s)	318, 329, 368
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	327, 366
FblI	GTMKAC	1 cut(s)	445
Fnu4HI	GCNGC	3 cut(s)	184, 187, 201
FokI	GGATG	2 cut(s)	466, 485
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	3 cut(s)	184, 187, 201
FspBI	CTAG	2 cut(s)	92, 492
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	3 cut(s)	184, 187, 201
HaeIII	GGCC	5 cut(s)	85, 129, 165, 174, 233
HapII	CCGG	5 cut(s)	162, 170, 192, 341, 395
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	331, 370
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	3 cut(s)	156, 437, 442
HpaII	CCGG	5 cut(s)	162, 170, 192, 341, 395
HphI	GGTGA	2 cut(s)	57, 355
Hpy166II	GTNNAC	1 cut(s)	446
Hpy188I	TCNGA	2 cut(s)	10, 391
Hpy188III	TCNNGA	1 cut(s)	434
Hpy8I	GTNNAC	1 cut(s)	446
Hpy99I	CGWCG	2 cut(s)	215, 356
HpyAV	CCTTC	4 cut(s)	5, 29, 353, 395
HpyCH4III	ACNGT	3 cut(s)	223, 270, 502
HpyCH4V	TGCA	4 cut(s)	105, 323, 331, 366
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 180, 197
HpyF3I	CTNAG	1 cut(s)	46
Hsp92II	CATG	2 cut(s)	331, 370
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	6 cut(s)	5, 177, 246, 256, 369, 391
LguI	GCTCTTC	1 cut(s)	483
Lsp1109I	GCAGC	3 cut(s)	170, 173, 187
LweI	GCATC	2 cut(s)	276, 463
MaeI	CTAG	2 cut(s)	92, 492
MalI	GATC	6 cut(s)	7, 179, 248, 258, 371, 393
MboI	GATC	6 cut(s)	5, 177, 246, 256, 369, 391
MboII	GAAGA	2 cut(s)	470, 475
MhlI	GDGCHC	2 cut(s)	57, 221
MlyI	GAGTC	3 cut(s)	165, 446, 451
MnlI	CCTC	4 cut(s)	55, 145, 409, 463
MslI	CAYNNNNRTG	2 cut(s)	224, 332
MspA1I	CMGCKG	1 cut(s)	183
MspI	CCGG	5 cut(s)	162, 170, 192, 341, 395
MspR9I	CCNGG	3 cut(s)	126, 162, 171
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	171, 180, 197
NciI	CCSGG	2 cut(s)	162, 171
NdeII	GATC	6 cut(s)	5, 177, 246, 256, 369, 391
NlaIII	CATG	2 cut(s)	331, 370
NlaIV	GGNNCC	1 cut(s)	339
NmeAIII	GCCGAG	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PkrI	GCNGC	3 cut(s)	185, 188, 202
PleI	GAGTC	3 cut(s)	164, 445, 450
PpsI	GAGTC	3 cut(s)	164, 445, 450
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	2 cut(s)	172, 231
RsaI	GTAC	2 cut(s)	308, 490
RsaNI	GTAC	2 cut(s)	307, 489
RseI	CAYNNNNRTG	2 cut(s)	224, 332
SacI	GAGCTC	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	483
SatI	GCNGC	3 cut(s)	184, 187, 201
Sau3AI	GATC	6 cut(s)	5, 177, 246, 256, 369, 391
Sau96I	GGNCC	2 cut(s)	172, 231
ScaI	AGTACT	1 cut(s)	490
SchI	GAGTC	3 cut(s)	165, 446, 451
ScrFI	CCNGG	3 cut(s)	126, 162, 171
SduI	GDGCHC	2 cut(s)	57, 221
SetI	ASST	7 cut(s)	16, 47, 57, 65, 81, 246, 281
SfaNI	GCATC	2 cut(s)	276, 463
SfiI	GGCCNNNNNGGCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	2 cut(s)	224, 332
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SpeI	ACTAGT	1 cut(s)	491
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	181
SspMI	CTAG	2 cut(s)	92, 492
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	129
StyD4I	CCNGG	3 cut(s)	124, 160, 169
TaaI	ACNGT	3 cut(s)	223, 270, 502
TaqI	TCGA	3 cut(s)	150, 372, 440
TatI	WGTACW	1 cut(s)	488
TseI	GCWGC	3 cut(s)	183, 186, 200
TspDTI	ATGAA	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	445
XspI	CTAG	2 cut(s)	92, 492
ZrmI	AGTACT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.