Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001280

Physical Location & Seq

Genomic Coordinates Forward (+)

6362789 .. 6363292

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1091600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAAGAAGAAAAATATCAGACGCAGTCCAAATGGCAAGGCAAAGCCTCCGCCGAGCTAAAACGCATGTCGCCGGAACGAGCCTGGCCGGCCCTGGCCAATTTCTGCAACCTACACAAGTGGTTCCCCACGGTTTCCGCGTGTCGCCAAGTGGAGGGCGTCCCTGGCCAGCCGGATCTGTTCCGGTACTGCGCAAGTGCACCTGTTGATTATGATGAGTCCACCATCAAGTGGTCTGAAGAGAAGTTGTTGACCATTGATCCGATCCAACGGCGCTTGAGCTACGAGGTCACGGAGAGCAATCTCGGGTTTAAGTCGTACGTTGCAACAAAGCAATTAGTTGCGATGGACAGCGGAGATGGGTGCAGGATCGAGTGGTCGTTTGTTAGCGATCCGATCGAAGGGTGGGGACTGGATGATTTTCTTTCCTACCTTGATTCTTCTGTTCAATTGATAGGAAAGACGATCATGGAGCATCCTTCTCTATCTGCTACTACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

168

Amino Acids

18.93

Weight (kDa)

4.88

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	17 - 142	7.4e-19	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32870
fragaria_vesca	FvH4_2g35410 FvH4_2g35420 FvH4_7g16550
malus_domestica	MD08G1112200.v1.1 MD08G1112400.v1.1 MD15G1091600.v1.1
prunus_persica	Prupe.1G446300_v2.0.a1 Prupe.1G446400_v2.0.a1 Prupe.1G446600_v2.0.a1
pyrus_communis	pycom08g09320 pycom08g09330
rosa_chinensis	RchiOBHm_Chr1g0359611 RchiOBHm_Chr6g0306471 RchiOBHm_Chr6g0306481 RchiOBHm_Chr6g0306491 RchiOBHm_Chr7g0223821
rosa_laevigata	RLG00000001927 RLG00000010792 RLG00000010793 RLG00000010794 RLG00000027858
rosa_multiflora	Rmu_co8209076.1_g000001 Rmu_sc0002971.1_g000012 Rmu_sc0002971.1_g000013 Rmu_sc0013097.1_g000009
rosa_roxburghii	Rroxscaffold_3G00235260 Rroxscaffold_4G00296890 Rroxscaffold_7G00161730 Rroxscaffold_7G00161740
rosa_rugosa	Rorug01G0272300 Rorug06G0349800 Rorug06G0349900 Rorug06G0349900 Rorug07G0220700
rosa_samantha	Rh1AG286000 Rh1BG252200 Rh1CG269400 Rh1DG281300 Rh6AG461900 Rh6AG462000 Rh6BG438800 Rh6BG438900 Rh6BG439100 Rh6CG476100 Rh6CG476300 Rh6DG462800 Rh6DG462900 Rh6DG463000 Rh7AG363400 Rh7BG354500 Rh7CG381800
rosa_wichuraiana	Rw1G025410 Rw6G040260 Rw6G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	193
AccB7I	CCANNNNNTGG	1 cut(s)	231
AccII	CGCG	1 cut(s)	140
AciI	CCGC	3 cut(s)	51, 138, 354
AclWI	GGATC	5 cut(s)	183, 254, 259, 377, 386
AcoI	YGGCCR	3 cut(s)	86, 96, 166
AcuI	CTGAAG	1 cut(s)	258
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	2 cut(s)	188, 320
AfiI	CCNNNNNNNGG	3 cut(s)	154, 231, 401
AgsI	TTSAA	1 cut(s)	449
AjnI	CCWGG	3 cut(s)	83, 93, 163
AluBI	AGCT	2 cut(s)	58, 282
AluI	AGCT	2 cut(s)	58, 282
Alw21I	GWGCWC	1 cut(s)	202
Alw44I	GTGCAC	1 cut(s)	198
AlwI	GGATC	5 cut(s)	183, 254, 259, 377, 386
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	4 cut(s)	86, 90, 96, 166
ApaLI	GTGCAC	1 cut(s)	198
AspLEI	GCGC	2 cut(s)	194, 276
AspS9I	GGNCC	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	202
BalI	TGGCCA	2 cut(s)	98, 168
Bbv12I	GWGCWC	1 cut(s)	202
BccI	CCATC	3 cut(s)	233, 340, 353
BceAI	ACGGC	1 cut(s)	287
BciT130I	CCWGG	3 cut(s)	85, 95, 165
BfoI	RGCGCY	1 cut(s)	277
BglI	GCCNNNNNGGC	1 cut(s)	89
Bme1390I	CCNGG	3 cut(s)	85, 95, 165
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	3 cut(s)	85, 95, 165
BmsI	GCATC	1 cut(s)	484
BpuEI	CTTGAG	1 cut(s)	298
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	93, 129, 163
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 231, 401
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	417
BseBI	CCWGG	3 cut(s)	85, 95, 165
BseDI	CCNNGG	3 cut(s)	93, 129, 163
BseGI	GGATG	2 cut(s)	421, 475
BseLI	CCNNNNNNNGG	3 cut(s)	154, 231, 401
BseNI	ACTGG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	202
BsgI	GTGCAG	1 cut(s)	385
Bsh1236I	CGCG	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	4 cut(s)	88, 92, 98, 168
BsiEI	CGRYCG	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	4 cut(s)	74, 89, 173, 184
BsiWI	CGTACG	1 cut(s)	318
BslFI	GGGAC	2 cut(s)	146, 423
BslI	CCNNNNNNNGG	3 cut(s)	154, 231, 401
BsmFI	GGGAC	2 cut(s)	146, 423
BsnI	GGCC	4 cut(s)	88, 92, 98, 168
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	7 cut(s)	175, 259, 264, 369, 391, 396, 465
BspACI	CCGC	3 cut(s)	51, 138, 354
BspANI	GGCC	4 cut(s)	88, 92, 98, 168
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	5 cut(s)	183, 254, 259, 377, 386
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	417
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	3 cut(s)	93, 129, 163
BssMI	GATC	7 cut(s)	175, 259, 264, 369, 391, 396, 465
BssNI	GRCGYC	1 cut(s)	159
Bst2UI	CCWGG	3 cut(s)	85, 95, 165
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	90, 170
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	421, 475
BstFNI	CGCG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	2 cut(s)	194, 276
BstKTI	GATC	7 cut(s)	178, 262, 267, 372, 394, 399, 468
BstMBI	GATC	7 cut(s)	175, 259, 264, 369, 391, 396, 465
BstMCI	CGRYCG	1 cut(s)	399
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 165
BstNI	CCWGG	3 cut(s)	85, 95, 165
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	3 cut(s)	83, 93, 163
BstSLI	GKGCMC	1 cut(s)	202
BstUI	CGCG	1 cut(s)	140
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	4 cut(s)	88, 92, 98, 168
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	359
BtsCI	GGATG	2 cut(s)	421, 475
Cac8I	GCNNGC	2 cut(s)	90, 170
CfoI	GCGC	2 cut(s)	194, 276
Cfr10I	RCCGGY	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	91
CseI	GACGC	2 cut(s)	31, 148
Csp6I	GTAC	2 cut(s)	187, 319
CviAII	CATG	2 cut(s)	67, 469
CviJI	RGCY	9 cut(s)	47, 58, 83, 88, 92, 98, 168, 172, 282
CviKI_1	RGCY	9 cut(s)	47, 58, 83, 88, 92, 98, 168, 172, 282
CviQI	GTAC	2 cut(s)	187, 319
DpnI	GATC	7 cut(s)	177, 261, 266, 371, 393, 398, 467
DpnII	GATC	7 cut(s)	175, 259, 264, 369, 391, 396, 465
EaeI	YGGCCR	3 cut(s)	86, 96, 166
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
EciI	GGCGGA	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	305
EcoRII	CCWGG	3 cut(s)	83, 93, 163
FaeI	CATG	2 cut(s)	70, 472
FaiI	YATR	3 cut(s)	68, 213, 470
FaqI	GGGAC	2 cut(s)	146, 423
FatI	CATG	2 cut(s)	66, 468
FokI	GGATG	2 cut(s)	428, 462
FseI	GGCCGGCC	1 cut(s)	92
FspI	TGCGCA	1 cut(s)	193
GlaI	GCGC	2 cut(s)	193, 275
HaeII	RGCGCY	1 cut(s)	277
HaeIII	GGCC	4 cut(s)	88, 92, 98, 168
HapII	CCGG	4 cut(s)	74, 89, 173, 184
HgaI	GACGC	2 cut(s)	31, 148
HhaI	GCGC	2 cut(s)	194, 276
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	70, 472
Hin6I	GCGC	2 cut(s)	192, 274
HinP1I	GCGC	2 cut(s)	192, 274
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	2 cut(s)	218, 437
HpaII	CCGG	4 cut(s)	74, 89, 173, 184
Hpy166II	GTNNAC	3 cut(s)	200, 222, 252
Hpy188I	TCNGA	4 cut(s)	21, 238, 264, 396
Hpy8I	GTNNAC	3 cut(s)	200, 222, 252
HpyAV	CCTTC	2 cut(s)	395, 489
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	4 cut(s)	108, 200, 326, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 165
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	70, 472
HspAI	GCGC	2 cut(s)	192, 274
KroI	GCCGGC	1 cut(s)	88
KroNI	GCCGGC	1 cut(s)	90
Kzo9I	GATC	7 cut(s)	175, 259, 264, 369, 391, 396, 465
LmnI	GCTCC	1 cut(s)	472
LweI	GCATC	1 cut(s)	484
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	7 cut(s)	177, 261, 266, 371, 393, 398, 467
MboI	GATC	7 cut(s)	175, 259, 264, 369, 391, 396, 465
MboII	GAAGA	4 cut(s)	17, 20, 251, 432
MfeI	CAATTG	1 cut(s)	449
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	202
MlsI	TGGCCA	2 cut(s)	98, 168
MluCI	AATT	3 cut(s)	100, 335, 449
MluNI	TGGCCA	2 cut(s)	98, 168
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	3 cut(s)	58, 148, 280
Mox20I	TGGCCA	2 cut(s)	98, 168
MroNI	GCCGGC	1 cut(s)	88
MscI	TGGCCA	2 cut(s)	98, 168
MseI	TTAA	1 cut(s)	312
Msp20I	TGGCCA	2 cut(s)	98, 168
MspA1I	CMGCKG	1 cut(s)	354
MspI	CCGG	4 cut(s)	74, 89, 173, 184
MspR9I	CCNGG	3 cut(s)	85, 95, 165
MunI	CAATTG	1 cut(s)	449
MvaI	CCWGG	3 cut(s)	85, 95, 165
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	89, 165
NaeI	GCCGGC	1 cut(s)	90
NdeII	GATC	7 cut(s)	175, 259, 264, 369, 391, 396, 465
NgoMIV	GCCGGC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	70, 472
NlaIV	GGNNCC	1 cut(s)	125
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	289
NsbI	TGCGCA	1 cut(s)	193
NspI	RCATGY	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PdiI	GCCGGC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	437
Pfl23II	CGTACG	1 cut(s)	318
PflFI	GACNNNGTC	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	231
Ple19I	CGATCG	1 cut(s)	399
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp6I	CCWGG	3 cut(s)	83, 93, 163
PspGI	CCWGG	3 cut(s)	83, 93, 163
PspLI	CGTACG	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	25
PvuI	CGATCG	1 cut(s)	399
RigI	GGCCGGCC	1 cut(s)	92
RsaI	GTAC	2 cut(s)	188, 320
RsaNI	GTAC	2 cut(s)	187, 319
SaqAI	TTAA	1 cut(s)	312
Sau3AI	GATC	7 cut(s)	175, 259, 264, 369, 391, 396, 465
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	3 cut(s)	85, 95, 165
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	7 cut(s)	60, 114, 205, 284, 291, 324, 435
SfaNI	GCATC	1 cut(s)	484
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	3 cut(s)	100, 335, 449
SsiI	CCGC	3 cut(s)	51, 138, 354
StyD4I	CCNGG	3 cut(s)	83, 93, 163
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	372, 399
TasI	AATT	3 cut(s)	100, 335, 449
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	289
TspGWI	ACGGA	1 cut(s)	308
Tth111I	GACNNNGTC	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	231
VneI	GTGCAC	1 cut(s)	198
XceI	RCATGY	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.