Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001280

Physical Location & Seq

Genomic Coordinates Forward (+)

37773012 .. 37773626

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G446600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCAGAAGATCAAATTCCAAAGTCCAAATGGGAAGGCAAAACCTCTGCTGATCTTGAAGGCTCATCAGCTGAACAAGTTTGGCCTCTCCTGGCCGATTTCTGCAGCTTACACAAGTGGTTCCCCGATATTGCCACGTGTTACCGAGTGGATGGCGTCCCTGGCCAACCGGGTCTGATCCGGTACTGCGCCCGTGCTCCTATTGATAATGATGAGTCCACCATCAAGTGGGCCAAAGAGAAGCTACTGTCCCTTGATCCAATCCAACGGTGTTTGAGCTATGAGATTATTGAGAGCAATCTCGGGTTTAAGTCGTATGTTGCGGTAATGCAAGTAGTCCCGATCAACGGCGGAGATGGCAGCATTGGGTGCAAGATCGAGTGGTCGTATGTTTGCGATCCGATTGAAGGGTGGGGATTGAATGATTTTCGTTCATACCTTGACTCTTCTCTTCAATTGATGGCAGAGAAGATGACGGAGCATACTCTTCTATGTACCACTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

169

Amino Acids

18.74

Weight (kDa)

4.65

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32870
fragaria_vesca	FvH4_2g35410 FvH4_2g35420 FvH4_7g16550
malus_domestica	MD08G1112200.v1.1 MD08G1112400.v1.1 MD15G1091600.v1.1
prunus_persica	Prupe.1G446300_v2.0.a1 Prupe.1G446400_v2.0.a1 Prupe.1G446600_v2.0.a1
pyrus_communis	pycom08g09320 pycom08g09330
rosa_chinensis	RchiOBHm_Chr1g0359611 RchiOBHm_Chr6g0306471 RchiOBHm_Chr6g0306481 RchiOBHm_Chr6g0306491 RchiOBHm_Chr7g0223821
rosa_laevigata	RLG00000001927 RLG00000010792 RLG00000010793 RLG00000010794 RLG00000027858
rosa_multiflora	Rmu_co8209076.1_g000001 Rmu_sc0002971.1_g000012 Rmu_sc0002971.1_g000013 Rmu_sc0013097.1_g000009
rosa_roxburghii	Rroxscaffold_3G00235260 Rroxscaffold_4G00296890 Rroxscaffold_7G00161730 Rroxscaffold_7G00161740
rosa_rugosa	Rorug01G0272300 Rorug06G0349800 Rorug06G0349900 Rorug06G0349900 Rorug07G0220700
rosa_samantha	Rh1AG286000 Rh1BG252200 Rh1CG269400 Rh1DG281300 Rh6AG461900 Rh6AG462000 Rh6BG438800 Rh6BG438900 Rh6BG439100 Rh6CG476100 Rh6CG476300 Rh6DG462800 Rh6DG462900 Rh6DG463000 Rh7AG363400 Rh7BG354500 Rh7CG381800
rosa_wichuraiana	Rw1G025410 Rw6G040260 Rw6G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	228
AciI	CCGC	2 cut(s)	323, 351
AclWI	GGATC	3 cut(s)	172, 251, 392
AcoI	YGGCCR	2 cut(s)	93, 163
AcsI	RAATTY	1 cut(s)	15
AcvI	CACGTG	1 cut(s)	138
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	185, 496
AfiI	CCNNNNNNNGG	3 cut(s)	228, 347, 407
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	4 cut(s)	59, 407, 421, 455
AjnI	CCWGG	2 cut(s)	90, 160
AluBI	AGCT	4 cut(s)	71, 108, 244, 279
AluI	AGCT	4 cut(s)	71, 108, 244, 279
Alw21I	GWGCWC	1 cut(s)	199
AlwI	GGATC	3 cut(s)	172, 251, 392
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	4 cut(s)	83, 93, 163, 231
ApeKI	GCWGC	2 cut(s)	105, 360
ApoI	RAATTY	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	231
AsuC2I	CCSGG	1 cut(s)	171
AvaI	CYCGRG	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	165
BbrPI	CACGTG	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	117, 372
BccI	CCATC	4 cut(s)	146, 230, 350, 454
BceAI	ACGGC	1 cut(s)	364
BciT130I	CCWGG	2 cut(s)	92, 162
BcnI	CCSGG	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	103
BisI	GCNGC	2 cut(s)	106, 361
BlsI	GCNGC	2 cut(s)	107, 362
Bme1390I	CCNGG	3 cut(s)	92, 162, 171
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	3 cut(s)	92, 162, 171
BpuMI	CCSGG	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 347, 407
Bse1I	ACTGG	1 cut(s)	505
BseBI	CCWGG	2 cut(s)	92, 162
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	3 cut(s)	228, 347, 407
BseNI	ACTGG	1 cut(s)	505
BseXI	GCAGC	2 cut(s)	117, 372
BshFI	GGCC	4 cut(s)	85, 95, 165, 233
BsiHKAI	GWGCWC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	170, 181
BslFI	GGGAC	3 cut(s)	143, 235, 323
BslI	CCNNNNNNNGG	3 cut(s)	228, 347, 407
BsmFI	GGGAC	3 cut(s)	143, 235, 323
BsnI	GGCC	4 cut(s)	85, 95, 165, 233
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	7 cut(s)	10, 52, 177, 256, 342, 375, 397
BspACI	CCGC	2 cut(s)	323, 351
BspANI	GGCC	4 cut(s)	85, 95, 165, 233
BspLI	GGNNCC	1 cut(s)	122
BspMAI	CTGCAG	1 cut(s)	107
BspPI	GGATC	3 cut(s)	172, 251, 392
BsrI	ACTGG	1 cut(s)	505
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	7 cut(s)	10, 52, 177, 256, 342, 375, 397
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	92, 162
Bst4CI	ACNGT	2 cut(s)	249, 270
Bst6I	CTCTTC	3 cut(s)	451, 456, 492
BstACI	GRCGYC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	369
BstBAI	YACGTR	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	7 cut(s)	13, 55, 180, 259, 345, 378, 400
BstMBI	GATC	7 cut(s)	10, 52, 177, 256, 342, 375, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 357, 369
BstNI	CCWGG	2 cut(s)	92, 162
BstSCI	CCNGG	3 cut(s)	90, 160, 169
BstSFI	CTRYAG	1 cut(s)	103
BstV1I	GCAGC	2 cut(s)	117, 372
BsuRI	GGCC	4 cut(s)	85, 95, 165, 233
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	498
CfoI	GCGC	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	231
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	184, 495
CviJI	RGCY	9 cut(s)	63, 71, 85, 95, 108, 165, 233, 244, 279
CviKI_1	RGCY	9 cut(s)	63, 71, 85, 95, 108, 165, 233, 244, 279
CviQI	GTAC	2 cut(s)	184, 495
DpnI	GATC	7 cut(s)	12, 54, 179, 258, 344, 377, 399
DpnII	GATC	7 cut(s)	10, 52, 177, 256, 342, 375, 397
EaeI	YGGCCR	2 cut(s)	93, 163
Eam1104I	CTCTTC	3 cut(s)	451, 456, 492
EarI	CTCTTC	3 cut(s)	451, 456, 492
EciI	GGCGGA	1 cut(s)	366
Eco72I	CACGTG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	90, 160
FaiI	YATR	6 cut(s)	282, 318, 390, 436, 483, 493
FaqI	GGGAC	3 cut(s)	143, 235, 323
Fnu4HI	GCNGC	2 cut(s)	106, 361
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	106, 361
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	2 cut(s)	106, 361
HaeIII	GGCC	4 cut(s)	85, 95, 165, 233
HapII	CCGG	2 cut(s)	170, 181
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	215, 443
HpaII	CCGG	2 cut(s)	170, 181
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	2 cut(s)	177, 402
Hpy188III	TCNNGA	2 cut(s)	56, 340
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	3 cut(s)	29, 53, 401
HpyCH4III	ACNGT	2 cut(s)	249, 270
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	3 cut(s)	105, 331, 372
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 357, 369
HpySE526I	ACGT	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	156
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	7 cut(s)	10, 52, 177, 256, 342, 375, 397
LmnI	GCTCC	2 cut(s)	202, 478
LpnPI	CCDG	7 cut(s)	77, 104, 147, 174, 183, 194, 486
Lsp1109I	GCAGC	2 cut(s)	117, 372
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	7 cut(s)	12, 54, 179, 258, 344, 377, 399
MboI	GATC	7 cut(s)	10, 52, 177, 256, 342, 375, 397
MboII	GAAGA	5 cut(s)	20, 438, 443, 479, 481
MfeI	CAATTG	1 cut(s)	455
MhlI	GDGCHC	1 cut(s)	199
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	2 cut(s)	15, 455
MluNI	TGGCCA	1 cut(s)	165
MlyI	GAGTC	2 cut(s)	224, 437
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	2 cut(s)	55, 96
Mox20I	TGGCCA	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	170, 181
MspR9I	CCNGG	3 cut(s)	92, 162, 171
MunI	CAATTG	1 cut(s)	455
MvaI	CCWGG	2 cut(s)	92, 162
MwoI	GCNNNNNNNGC	3 cut(s)	162, 357, 369
NciI	CCSGG	1 cut(s)	171
NdeII	GATC	7 cut(s)	10, 52, 177, 256, 342, 375, 397
NlaIV	GGNNCC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	107, 362
PleI	GAGTC	2 cut(s)	223, 437
PmaCI	CACGTG	1 cut(s)	138
PmlI	CACGTG	1 cut(s)	138
PpsI	GAGTC	2 cut(s)	223, 437
Ppu21I	YACGTR	1 cut(s)	138
Psp6I	CCWGG	2 cut(s)	90, 160
PspCI	CACGTG	1 cut(s)	138
PspGI	CCWGG	2 cut(s)	90, 160
PspN4I	GGNNCC	1 cut(s)	122
PspPI	GGNCC	1 cut(s)	231
PstI	CTGCAG	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	2 cut(s)	185, 496
RsaNI	GTAC	2 cut(s)	184, 495
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	106, 361
Sau3AI	GATC	7 cut(s)	10, 52, 177, 256, 342, 375, 397
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	2 cut(s)	224, 437
ScrFI	CCNGG	3 cut(s)	92, 162, 171
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	7 cut(s)	47, 73, 110, 140, 246, 281, 441
SfcI	CTRYAG	1 cut(s)	103
Sse9I	AATT	2 cut(s)	15, 455
SsiI	CCGC	2 cut(s)	323, 351
StyD4I	CCNGG	3 cut(s)	90, 160, 169
TaaI	ACNGT	2 cut(s)	249, 270
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	1 cut(s)	378
TasI	AATT	2 cut(s)	15, 455
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	2 cut(s)	105, 360
TspDTI	ATGAA	1 cut(s)	423
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	1 cut(s)	505
Van91I	CCANNNNNTGG	1 cut(s)	228
XapI	RAATTY	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.