Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001280

Physical Location & Seq

Genomic Coordinates Reverse (-)

4426454 .. 4427196

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00161740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCGATCAGAAGGTCAAGCACAGCCGAAATGGGAAGGCAAAACCTCAGCCGAGCTCAAAAGCTCACCAGCACAACAGGTCTGGCCTTTCCTAGCCGATTTCTGCAACTTACAAGAAGTCTTACCAGGCCTTGAAACTTGCTACCAAGTCGAGGGAGTCCCCGGCCAGCCGGGCCTGATCCGCTACTGCGCCGGACCGGCTACCGATAACGACGAGACCACCGTTAAGTGGGTCAAAGAGAAGCTGACCTCGATTGATCCGATCAAACGGTGCTTCAGCTACGAGATCGTTGAGAGTAACATGGGGTTCAAGTCGTATGTTGGAACCATACTAGTGGTTCCGGTGATAAACGACGATGAAGGGTGCATGATCGAGTGGTCGTTTGTTTGTGATCCGATCGAAGGGTGGCGATTGGAGGACTTCCAGTCTTATTTGGAGTCTTCTCTACAAGGGATGGCAAAGAAGATTGAGGATGCTCTTCTGTCTAGTACTAGTGCTACTGTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

169

Amino Acids

18.76

Weight (kDa)

4.43

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	22 - 157	2.1e-22	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32870
fragaria_vesca	FvH4_2g35410 FvH4_2g35420 FvH4_7g16550
malus_domestica	MD08G1112200.v1.1 MD08G1112400.v1.1 MD15G1091600.v1.1
prunus_persica	Prupe.1G446300_v2.0.a1 Prupe.1G446400_v2.0.a1 Prupe.1G446600_v2.0.a1
pyrus_communis	pycom08g09320 pycom08g09330
rosa_chinensis	RchiOBHm_Chr1g0359611 RchiOBHm_Chr6g0306471 RchiOBHm_Chr6g0306481 RchiOBHm_Chr6g0306491 RchiOBHm_Chr7g0223821
rosa_laevigata	RLG00000001927 RLG00000010792 RLG00000010793 RLG00000010794 RLG00000027858
rosa_multiflora	Rmu_co8209076.1_g000001 Rmu_sc0002971.1_g000012 Rmu_sc0002971.1_g000013 Rmu_sc0013097.1_g000009
rosa_roxburghii	Rroxscaffold_3G00235260 Rroxscaffold_4G00296890 Rroxscaffold_7G00161730 Rroxscaffold_7G00161740
rosa_rugosa	Rorug01G0272300 Rorug06G0349800 Rorug06G0349900 Rorug06G0349900 Rorug07G0220700
rosa_samantha	Rh1AG286000 Rh1BG252200 Rh1CG269400 Rh1DG281300 Rh6AG461900 Rh6AG462000 Rh6BG438800 Rh6BG438900 Rh6BG439100 Rh6CG476100 Rh6CG476300 Rh6DG462800 Rh6DG462900 Rh6DG463000 Rh7AG363400 Rh7BG354500 Rh7CG381800
rosa_wichuraiana	Rw1G025410 Rw6G040260 Rw6G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	181
AclWI	GGATC	3 cut(s)	172, 251, 386
AcoI	YGGCCR	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	259
AfaI	GTAC	1 cut(s)	490
AfiI	CCNNNNNNNGG	3 cut(s)	151, 228, 401
AgsI	TTSAA	2 cut(s)	134, 310
AhdI	GACNNNNNGTC	1 cut(s)	424
AhlI	ACTAGT	2 cut(s)	331, 491
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	4 cut(s)	55, 63, 244, 279
AluI	AGCT	4 cut(s)	55, 63, 244, 279
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	3 cut(s)	172, 251, 386
AoxI	GGCC	4 cut(s)	83, 127, 163, 172
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	172, 194
AsuC2I	CCSGG	2 cut(s)	162, 171
AsuHPI	GGTGA	2 cut(s)	57, 355
AvaII	GGWCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	57
BbvCI	CCTCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	448
BciT130I	CCWGG	1 cut(s)	126
BcnI	CCSGG	2 cut(s)	162, 171
BcoDI	GTCTC	1 cut(s)	209
BcuI	ACTAGT	2 cut(s)	331, 491
BfaI	CTAG	4 cut(s)	92, 332, 486, 492
BglI	GCCNNNNNGGC	2 cut(s)	171, 197
BmcAI	AGTACT	1 cut(s)	490
Bme1390I	CCNGG	3 cut(s)	126, 162, 171
Bme18I	GGWCC	1 cut(s)	194
BmeRI	GACNNNNNGTC	1 cut(s)	424
BmgT120I	GGNCC	2 cut(s)	172, 194
BmiI	GGNNCC	2 cut(s)	325, 339
BmrFI	CCNGG	3 cut(s)	126, 162, 171
BmsI	GCATC	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	46
BpuMI	CCSGG	2 cut(s)	162, 171
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 228, 401
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	2 cut(s)	459, 478
BseLI	CCNNNNNNNGG	3 cut(s)	151, 228, 401
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	424
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	4 cut(s)	85, 129, 165, 174
BsiEI	CGRYCG	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	5 cut(s)	162, 170, 192, 197, 341
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	3 cut(s)	151, 228, 401
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	4 cut(s)	85, 129, 165, 174
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	8 cut(s)	5, 177, 256, 261, 285, 369, 391, 396
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	4 cut(s)	85, 129, 165, 174
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	325, 339
BspPI	GGATC	3 cut(s)	172, 251, 386
BspQI	GCTCTTC	1 cut(s)	483
BspTNI	GGTCTC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	424
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	8 cut(s)	5, 177, 256, 261, 285, 369, 391, 396
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	3 cut(s)	223, 270, 502
Bst6I	CTCTTC	1 cut(s)	483
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	46
BstF5I	GGATG	2 cut(s)	459, 478
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	8 cut(s)	8, 180, 259, 264, 288, 372, 394, 399
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	8 cut(s)	5, 177, 256, 261, 285, 369, 391, 396
BstMCI	CGRYCG	1 cut(s)	399
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 180, 197
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	3 cut(s)	124, 160, 169
BstV2I	GAAGAC	1 cut(s)	432
BstXI	CCANNNNNNTGG	1 cut(s)	334
BsuRI	GGCC	4 cut(s)	85, 129, 165, 174
BtsCI	GGATG	2 cut(s)	459, 478
Cac8I	GCNNGC	1 cut(s)	167
CfoI	GCGC	1 cut(s)	191
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	172, 194
CpoI	CGGWCCG	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	489
CspI	CGGWCCG	1 cut(s)	194
CviAII	CATG	2 cut(s)	301, 367
CviQI	GTAC	1 cut(s)	489
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	8 cut(s)	7, 179, 258, 263, 287, 371, 393, 398
DpnII	GATC	8 cut(s)	5, 177, 256, 261, 285, 369, 391, 396
DriI	GACNNNNNGTC	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	483
Eam1105I	GACNNNNNGTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	483
Ecl136II	GAGCTC	1 cut(s)	55
Eco147I	AGGCCT	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	2 cut(s)	304, 370
FaiI	YATR	4 cut(s)	302, 318, 329, 368
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	300, 366
FokI	GGATG	2 cut(s)	466, 485
FriOI	GRGCYC	1 cut(s)	57
FspBI	CTAG	4 cut(s)	92, 332, 486, 492
GlaI	GCGC	1 cut(s)	190
HaeIII	GGCC	4 cut(s)	85, 129, 165, 174
HapII	CCGG	5 cut(s)	162, 170, 192, 197, 341
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	304, 370
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	156, 437
HpaII	CCGG	5 cut(s)	162, 170, 192, 197, 341
HphI	GGTGA	2 cut(s)	57, 355
Hpy188I	TCNGA	3 cut(s)	10, 261, 396
Hpy99I	CGWCG	2 cut(s)	215, 356
HpyAV	CCTTC	4 cut(s)	5, 29, 353, 395
HpyCH4III	ACNGT	3 cut(s)	223, 270, 502
HpyCH4V	TGCA	2 cut(s)	105, 366
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 180, 197
HpyF3I	CTNAG	1 cut(s)	46
Hsp92II	CATG	2 cut(s)	304, 370
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	8 cut(s)	5, 177, 256, 261, 285, 369, 391, 396
LguI	GCTCTTC	1 cut(s)	483
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	4 cut(s)	92, 332, 486, 492
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	8 cut(s)	7, 179, 258, 263, 287, 371, 393, 398
MboI	GATC	8 cut(s)	5, 177, 256, 261, 285, 369, 391, 396
MboII	GAAGA	3 cut(s)	432, 470, 475
MhlI	GDGCHC	1 cut(s)	57
MlyI	GAGTC	2 cut(s)	165, 446
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	5 cut(s)	55, 145, 259, 409, 463
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	332
MspI	CCGG	5 cut(s)	162, 170, 192, 197, 341
MspR9I	CCNGG	3 cut(s)	126, 162, 171
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	171, 180, 197
NciI	CCSGG	2 cut(s)	162, 171
NdeII	GATC	8 cut(s)	5, 177, 256, 261, 285, 369, 391, 396
NlaIII	CATG	2 cut(s)	304, 370
NlaIV	GGNNCC	2 cut(s)	325, 339
NmeAIII	GCCGAG	1 cut(s)	76
PceI	AGGCCT	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 257
Ple19I	CGATCG	1 cut(s)	399
PleI	GAGTC	2 cut(s)	164, 445
PpsI	GAGTC	2 cut(s)	164, 445
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	325, 339
PspPI	GGNCC	2 cut(s)	172, 194
PvuI	CGATCG	1 cut(s)	399
RsaI	GTAC	1 cut(s)	490
RsaNI	GTAC	1 cut(s)	489
RseI	CAYNNNNRTG	1 cut(s)	332
Rsr2I	CGGWCCG	1 cut(s)	194
RsrII	CGGWCCG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	225
Sau3AI	GATC	8 cut(s)	5, 177, 256, 261, 285, 369, 391, 396
Sau96I	GGNCC	2 cut(s)	172, 194
ScaI	AGTACT	1 cut(s)	490
SchI	GAGTC	2 cut(s)	165, 446
ScrFI	CCNGG	3 cut(s)	126, 162, 171
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	8 cut(s)	16, 47, 57, 65, 81, 246, 251, 281
SfaNI	GCATC	1 cut(s)	463
SfiI	GGCCNNNNNGGCC	1 cut(s)	171
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	332
SpeI	ACTAGT	2 cut(s)	331, 491
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	181
SspMI	CTAG	4 cut(s)	92, 332, 486, 492
SstI	GAGCTC	1 cut(s)	57
StuI	AGGCCT	1 cut(s)	129
StyD4I	CCNGG	3 cut(s)	124, 160, 169
TaaI	ACNGT	3 cut(s)	223, 270, 502
TaqI	TCGA	4 cut(s)	150, 251, 372, 399
TatI	WGTACW	1 cut(s)	488
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TspDTI	ATGAA	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	194
XspI	CTAG	4 cut(s)	92, 332, 486, 492
ZrmI	AGTACT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.