Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001280

Physical Location & Seq

Genomic Coordinates Forward (+)

7580016 .. 7580391

Gene Structure 376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g09330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAGGAAGAAGACGATCAGAAGCAGTCCAAATGGCAAGGCAAAACCTCCGCCGAGCTGAAACGCACGGTAGCGGAGCAAGCCTGGACGGCCCTGGCCGATTTCTGCAACTTACACAAGTGGTTCCCAACGCTTGCCACGTGCCGCCAAGTGGAGGGCGTCCCTGGCCAGCCGGGTGTGATCCGGTACTGCGCGAGTGCGCCTGTTGATAATGATGAGTCCAGCATCAAGTGGGCAAACGAGAAGTTGTTGACCATTGATCCGATCCAACGGTTCGTACGTTGCAACAATGCAAGTAGTTGCGATGGACGGCGGAGATGGGTGCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

111

Amino Acids

12.56

Weight (kDa)

5.84

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32870
fragaria_vesca	FvH4_2g35410 FvH4_2g35420 FvH4_7g16550
malus_domestica	MD08G1112200.v1.1 MD08G1112400.v1.1 MD15G1091600.v1.1
prunus_persica	Prupe.1G446300_v2.0.a1 Prupe.1G446400_v2.0.a1 Prupe.1G446600_v2.0.a1
pyrus_communis	pycom08g09320 pycom08g09330
rosa_chinensis	RchiOBHm_Chr1g0359611 RchiOBHm_Chr6g0306471 RchiOBHm_Chr6g0306481 RchiOBHm_Chr6g0306491 RchiOBHm_Chr7g0223821
rosa_laevigata	RLG00000001927 RLG00000010792 RLG00000010793 RLG00000010794 RLG00000027858
rosa_multiflora	Rmu_co8209076.1_g000001 Rmu_sc0002971.1_g000012 Rmu_sc0002971.1_g000013 Rmu_sc0013097.1_g000009
rosa_roxburghii	Rroxscaffold_3G00235260 Rroxscaffold_4G00296890 Rroxscaffold_7G00161730 Rroxscaffold_7G00161740
rosa_rugosa	Rorug01G0272300 Rorug06G0349800 Rorug06G0349900 Rorug06G0349900 Rorug07G0220700
rosa_samantha	Rh1AG286000 Rh1BG252200 Rh1CG269400 Rh1DG281300 Rh6AG461900 Rh6AG462000 Rh6BG438800 Rh6BG438900 Rh6BG439100 Rh6CG476100 Rh6CG476300 Rh6DG462800 Rh6DG462900 Rh6DG463000 Rh7AG363400 Rh7BG354500 Rh7CG381800
rosa_wichuraiana	Rw1G025410 Rw6G040260 Rw6G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	194
AciI	CCGC	4 cut(s)	51, 74, 145, 313
AclWI	GGATC	3 cut(s)	175, 254, 259
AcoI	YGGCCR	2 cut(s)	96, 166
AcvI	CACGTG	1 cut(s)	141
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	2 cut(s)	188, 279
AfiI	CCNNNNNNNGG	2 cut(s)	151, 154
AjnI	CCWGG	3 cut(s)	83, 93, 163
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
AlwI	GGATC	3 cut(s)	175, 254, 259
AoxI	GGCC	3 cut(s)	90, 96, 166
AspLEI	GCGC	2 cut(s)	194, 202
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	168
BbrPI	CACGTG	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	18
BccI	CCATC	2 cut(s)	299, 312
BceAI	ACGGC	2 cut(s)	105, 326
BciT130I	CCWGG	3 cut(s)	85, 95, 165
BcnI	CCSGG	1 cut(s)	174
BglI	GCCNNNNNGGC	1 cut(s)	89
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
Bme1390I	CCNGG	4 cut(s)	85, 95, 165, 174
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	4 cut(s)	85, 95, 165, 174
BmsI	GCATC	1 cut(s)	234
BpiI	GAAGAC	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	93, 163
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 154
BseBI	CCWGG	3 cut(s)	85, 95, 165
BseDI	CCNNGG	2 cut(s)	93, 163
BseLI	CCNNNNNNNGG	2 cut(s)	151, 154
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	3 cut(s)	92, 98, 168
BsiSI	CCGG	2 cut(s)	173, 184
BsiWI	CGTACG	1 cut(s)	277
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	151, 154
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	3 cut(s)	92, 98, 168
Bsp143I	GATC	4 cut(s)	16, 180, 259, 264
BspACI	CCGC	4 cut(s)	51, 74, 145, 313
BspANI	GGCC	3 cut(s)	92, 98, 168
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	3 cut(s)	175, 254, 259
BssECI	CCNNGG	2 cut(s)	93, 163
BssMI	GATC	4 cut(s)	16, 180, 259, 264
BssNI	GRCGYC	1 cut(s)	159
Bst2UI	CCWGG	3 cut(s)	85, 95, 165
Bst4CI	ACNGT	2 cut(s)	70, 273
BstACI	GRCGYC	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	141
BstC8I	GCNNGC	3 cut(s)	81, 135, 170
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	2 cut(s)	194, 202
BstKTI	GATC	4 cut(s)	19, 183, 262, 267
BstMBI	GATC	4 cut(s)	16, 180, 259, 264
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 89, 165
BstNI	CCWGG	3 cut(s)	85, 95, 165
BstSCI	CCNGG	4 cut(s)	83, 93, 163, 172
BstUI	CGCG	1 cut(s)	194
BstV2I	GAAGAC	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	92, 98, 168
BtgZI	GCGATG	1 cut(s)	318
Cac8I	GCNNGC	3 cut(s)	81, 135, 170
CfoI	GCGC	2 cut(s)	194, 202
Cfr13I	GGNCC	1 cut(s)	91
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	187, 278
CviJI	RGCY	6 cut(s)	58, 83, 92, 98, 168, 172
CviKI_1	RGCY	6 cut(s)	58, 83, 92, 98, 168, 172
CviQI	GTAC	2 cut(s)	187, 278
DpnI	GATC	4 cut(s)	18, 182, 261, 266
DpnII	GATC	4 cut(s)	16, 180, 259, 264
EaeI	YGGCCR	2 cut(s)	96, 166
EciI	GGCGGA	2 cut(s)	40, 328
Eco72I	CACGTG	1 cut(s)	141
EcoRII	CCWGG	3 cut(s)	83, 93, 163
FaqI	GGGAC	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	145
GlaI	GCGC	2 cut(s)	193, 201
GluI	GCNGC	1 cut(s)	145
HaeIII	GGCC	3 cut(s)	92, 98, 168
HapII	CCGG	2 cut(s)	173, 184
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	2 cut(s)	194, 202
Hin1I	GRCGYC	1 cut(s)	159
Hin6I	GCGC	2 cut(s)	192, 200
HinP1I	GCGC	2 cut(s)	192, 200
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	1 cut(s)	218
HpaII	CCGG	2 cut(s)	173, 184
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	2 cut(s)	21, 264
Hpy8I	GTNNAC	1 cut(s)	252
HpyCH4III	ACNGT	2 cut(s)	70, 273
HpyCH4IV	ACGT	2 cut(s)	140, 280
HpyCH4V	TGCA	4 cut(s)	108, 285, 293, 325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 89, 165
HpySE526I	ACGT	2 cut(s)	140, 280
Hsp92I	GRCGYC	1 cut(s)	159
HspAI	GCGC	2 cut(s)	192, 200
Kzo9I	GATC	4 cut(s)	16, 180, 259, 264
LmnI	GCTCC	1 cut(s)	76
LweI	GCATC	1 cut(s)	234
MaeII	ACGT	2 cut(s)	140, 280
MalI	GATC	4 cut(s)	18, 182, 261, 266
MboI	GATC	4 cut(s)	16, 180, 259, 264
MboII	GAAGA	2 cut(s)	20, 23
MlsI	TGGCCA	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	292
MnlI	CCTC	2 cut(s)	58, 148
Mox20I	TGGCCA	1 cut(s)	168
MscI	TGGCCA	1 cut(s)	168
Msp20I	TGGCCA	1 cut(s)	168
MspI	CCGG	2 cut(s)	173, 184
MspR9I	CCNGG	4 cut(s)	85, 95, 165, 174
MvaI	CCWGG	3 cut(s)	85, 95, 165
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	80, 89, 165
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	4 cut(s)	16, 180, 259, 264
NlaIV	GGNNCC	1 cut(s)	125
NmeAIII	GCCGAG	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 277
Pfl23II	CGTACG	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	226
PmaCI	CACGTG	1 cut(s)	141
PmlI	CACGTG	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	226
Ppu21I	YACGTR	1 cut(s)	141
Psp6I	CCWGG	3 cut(s)	83, 93, 163
PspCI	CACGTG	1 cut(s)	141
PspGI	CCWGG	3 cut(s)	83, 93, 163
PspLI	CGTACG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	91
RsaI	GTAC	2 cut(s)	188, 279
RsaNI	GTAC	2 cut(s)	187, 278
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	4 cut(s)	16, 180, 259, 264
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	4 cut(s)	85, 95, 165, 174
SetI	ASST	4 cut(s)	50, 60, 143, 283
SfaNI	GCATC	1 cut(s)	234
SsiI	CCGC	4 cut(s)	51, 74, 145, 313
StyD4I	CCNGG	4 cut(s)	83, 93, 163, 172
TaaI	ACNGT	2 cut(s)	70, 273
TaiI	ACGT	2 cut(s)	143, 283
TauI	GCSGC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.