Rh7BG354500

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001280
Physical Location & Seq
Reverse (-)
37121180 .. 37121488
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG354500.1

Sequence Viewer

Length: 309 bp
ATGGCATTAGAAGAACCTGAACAGCGAAAATGGGGAGGCCAAACCTCTGCCAAGCTCAAAGGCTCAAAAGCGCAAGAGGTTTGGCCTCTCTTGGCGGACTTCTGCAACATGGACAAGTGGTTCCCCGGCCTCCACACTTGCTACCAAATTGGCGGAGTTCCTGTCCAACCTGGTCTGGTTCAGTACTGCGAGCGCAGCACGGATGAGACAACTATCCTGTGGGCAAAAGAGAAGCTACTCACGATCGACCCAATCAACCAGTGTATGACCTACGAGATTGTTGACAACAATATGGGTTTCGAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

102

Amino Acids

11.63

Weight (kDa)

4.72

Isoelectric Point (pI)

30.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 24 - 100 3.9e-10 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 95, 153
AfaI GTAC 1 cut(s) 185
AjnI CCWGG 1 cut(s) 169
AloI GAACNNNNNNTCC 2 cut(s) 104, 136
AluBI AGCT 2 cut(s) 55, 235
AluI AGCT 2 cut(s) 55, 235
Alw26I GTCTC 1 cut(s) 200
AoxI GGCC 3 cut(s) 37, 83, 127
ApeKI GCWGC 1 cut(s) 195
AspLEI GCGC 2 cut(s) 73, 195
AsuC2I CCSGG 1 cut(s) 126
BbvI GCAGC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 171
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 200
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
BmcAI AGTACT 1 cut(s) 185
Bme1390I CCNGG 2 cut(s) 126, 171
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 2 cut(s) 126, 171
BpuMI CCSGG 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 124
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bse1I ACTGG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 207
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 3 cut(s) 39, 85, 129
BsiEI CGRYCG 1 cut(s) 246
BsiSI CCGG 1 cut(s) 126
BsmAI GTCTC 1 cut(s) 200
BsnI GGCC 3 cut(s) 39, 85, 129
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 2 cut(s) 95, 153
BspANI GGCC 3 cut(s) 39, 85, 129
BspLI GGNNCC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 191
BstF5I GGATG 1 cut(s) 208
BstHHI GCGC 2 cut(s) 73, 195
BstKTI GATC 1 cut(s) 246
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 1 cut(s) 243
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstNI CCWGG 1 cut(s) 171
BstSCI CCNGG 2 cut(s) 124, 169
BstV1I GCAGC 1 cut(s) 207
BsuRI GGCC 3 cut(s) 39, 85, 129
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 266
Cac8I GCNNGC 1 cut(s) 191
CfoI GCGC 2 cut(s) 73, 195
CsiI ACCWGGT 1 cut(s) 169
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 109
CviJI RGCY 6 cut(s) 39, 55, 63, 85, 129, 235
CviKI_1 RGCY 6 cut(s) 39, 55, 63, 85, 129, 235
CviQI GTAC 1 cut(s) 184
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
EciI GGCGGA 2 cut(s) 110, 168
EcoRII CCWGG 1 cut(s) 169
FaeI CATG 1 cut(s) 112
FaiI YATR 3 cut(s) 110, 266, 293
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 196
GlaI GCGC 2 cut(s) 72, 194
GluI GCNGC 1 cut(s) 196
HaeIII GGCC 3 cut(s) 39, 85, 129
HapII CCGG 1 cut(s) 126
HhaI GCGC 2 cut(s) 73, 195
Hin1II CATG 1 cut(s) 112
Hin6I GCGC 2 cut(s) 71, 193
HinP1I GCGC 2 cut(s) 71, 193
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HpaII CCGG 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 283
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 1 cut(s) 283
HpyCH4V TGCA 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 112
HspAI GCGC 2 cut(s) 71, 193
Kzo9I GATC 1 cut(s) 243
LpnPI CCDG 8 cut(s) 30, 139, 156, 161, 174, 183, 230, 272
Lsp1109I GCAGC 1 cut(s) 207
MabI ACCWGGT 1 cut(s) 169
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 1 cut(s) 23
MluCI AATT 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 5 cut(s) 29, 55, 70, 96, 140
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 2 cut(s) 126, 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 195
NciI CCSGG 1 cut(s) 126
NdeII GATC 1 cut(s) 243
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 197
Ple19I CGATCG 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 122
PvuI CGATCG 1 cut(s) 246
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 1 cut(s) 243
ScaI AGTACT 1 cut(s) 185
ScrFI CCNGG 2 cut(s) 126, 171
SetI ASST 7 cut(s) 19, 47, 57, 81, 172, 237, 272
SexAI ACCWGGT 1 cut(s) 169
Sse9I AATT 1 cut(s) 147
SsiI CCGC 2 cut(s) 95, 153
StyD4I CCNGG 2 cut(s) 124, 169
TaqI TCGA 2 cut(s) 246, 300
TasI AATT 1 cut(s) 147
TatI WGTACW 1 cut(s) 183
TscAI CASTG 1 cut(s) 266
TseI GCWGC 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 1 cut(s) 266
ZrmI AGTACT 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.