Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001280

Physical Location & Seq

Genomic Coordinates Reverse (-)

65780747 .. 65781580

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG439100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAAGAACAAGCACAGCCCAAATGGCGAGGCAAGTCCTCTGCTGAGGTGAATGGCCATGCAGCACAAGAGGTGTGGCCTCTCTTGGCTGATTTCTGCAACCTACACAAAGTATTCCCCAAAGTCGAGACATGTTACCAACTAGAGGGAATCGCCGGCCAAACTGGTCTAGTTCGATACTGCGCCGGATTTGCGAGCAATCGTGACGAGTCGACCATCAAGTGGGCCAAAGAGAGGCTACTGATGATCGACCCAATCAAACGGTGCTTAAGCTACGAGTTTGATATTCGAAAAGGACCCATGTGCCATGAGACTGGGAAATGGAAGACGTTCAATCCTTTAGTGAATCTTCCCATGTGCCATGTTCTTACCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

125

Amino Acids

14.3

Weight (kDa)

8.23

Isoelectric Point (pI)

22.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	13 - 100	7.8e-10	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32870
fragaria_vesca	FvH4_2g35410 FvH4_2g35420 FvH4_7g16550
malus_domestica	MD08G1112200.v1.1 MD08G1112400.v1.1 MD15G1091600.v1.1
prunus_persica	Prupe.1G446300_v2.0.a1 Prupe.1G446400_v2.0.a1 Prupe.1G446600_v2.0.a1
pyrus_communis	pycom08g09320 pycom08g09330
rosa_chinensis	RchiOBHm_Chr1g0359611 RchiOBHm_Chr6g0306471 RchiOBHm_Chr6g0306481 RchiOBHm_Chr6g0306491 RchiOBHm_Chr7g0223821
rosa_laevigata	RLG00000001927 RLG00000010792 RLG00000010793 RLG00000010794 RLG00000027858
rosa_multiflora	Rmu_co8209076.1_g000001 Rmu_sc0002971.1_g000012 Rmu_sc0002971.1_g000013 Rmu_sc0013097.1_g000009
rosa_roxburghii	Rroxscaffold_3G00235260 Rroxscaffold_4G00296890 Rroxscaffold_7G00161730 Rroxscaffold_7G00161740
rosa_rugosa	Rorug01G0272300 Rorug06G0349800 Rorug06G0349900 Rorug06G0349900 Rorug07G0220700
rosa_samantha	Rh1AG286000 Rh1BG252200 Rh1CG269400 Rh1DG281300 Rh6AG461900 Rh6AG462000 Rh6BG438800 Rh6BG438900 Rh6BG439100 Rh6CG476100 Rh6CG476300 Rh6DG462800 Rh6DG462900 Rh6DG463000 Rh7AG363400 Rh7BG354500 Rh7CG381800
rosa_wichuraiana	Rw1G025410 Rw6G040260 Rw6G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	212
AcoI	YGGCCR	2 cut(s)	55, 157
AfiI	CCNNNNNNNGG	3 cut(s)	145, 222, 234
AflII	CTTAAG	1 cut(s)	268
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	334
AluBI	AGCT	1 cut(s)	273
AluI	AGCT	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	122, 305
AoxI	GGCC	4 cut(s)	55, 77, 157, 225
ApeKI	GCWGC	1 cut(s)	62
Asp700I	GAANNNNTTC	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	225, 296
AsuHPI	GGTGA	1 cut(s)	61
AsuII	TTCGAA	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	296
BalI	TGGCCA	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	332
BbvCI	CCTCAGC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	224
BcoDI	GTCTC	2 cut(s)	122, 305
BfaI	CTAG	2 cut(s)	143, 170
BfrI	CTTAAG	1 cut(s)	268
BglI	GCCNNNNNGGC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	2 cut(s)	225, 296
BmiI	GGNNCC	1 cut(s)	298
BmrI	ACTGGG	1 cut(s)	324
BmuI	ACTGGG	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 222, 234
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	169, 319
BseLI	CCNNNNNNNGG	3 cut(s)	145, 222, 234
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	169, 319
BseXI	GCAGC	1 cut(s)	74
BshFI	GGCC	4 cut(s)	57, 79, 159, 227
BsiSI	CCGG	2 cut(s)	156, 186
BslI	CCNNNNNNNGG	3 cut(s)	145, 222, 234
BsmAI	GTCTC	2 cut(s)	122, 305
BsnI	GGCC	4 cut(s)	57, 79, 159, 227
Bsp119I	TTCGAA	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	246
BspANI	GGCC	4 cut(s)	57, 79, 159, 227
BspCNI	CTCAG	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	298
BspT104I	TTCGAA	1 cut(s)	289
BspTI	CTTAAG	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	169, 319
BssAI	RCCGGY	1 cut(s)	155
BssMI	GATC	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	264
BstAFI	CTTAAG	1 cut(s)	268
BstBI	TTCGAA	1 cut(s)	289
BstC8I	GCNNGC	2 cut(s)	157, 196
BstDEI	CTNAG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	2 cut(s)	122, 305
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 191
BstNSI	RCATGY	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	74
BstV2I	GAAGAC	1 cut(s)	332
BstXI	CCANNNNNNTGG	1 cut(s)	314
BsuRI	GGCC	4 cut(s)	57, 79, 159, 227
Cac8I	GCNNGC	2 cut(s)	157, 196
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	225, 296
CspCI	CAANNNNNGTGG	2 cut(s)	56, 91
CviAII	CATG	6 cut(s)	59, 132, 301, 308, 355, 362
CviJI	RGCY	8 cut(s)	19, 57, 79, 89, 159, 227, 238, 273
CviKI_1	RGCY	8 cut(s)	19, 57, 79, 89, 159, 227, 238, 273
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
EaeI	YGGCCR	2 cut(s)	55, 157
Eco47I	GGWCC	1 cut(s)	296
EcoO109I	RGGNCCY	1 cut(s)	296
FaeI	CATG	6 cut(s)	62, 135, 304, 311, 358, 365
FaiI	YATR	6 cut(s)	60, 133, 302, 309, 356, 363
FatI	CATG	6 cut(s)	58, 131, 300, 307, 354, 361
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	2 cut(s)	143, 170
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	4 cut(s)	57, 79, 159, 227
HapII	CCGG	2 cut(s)	156, 186
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	6 cut(s)	62, 135, 304, 311, 358, 365
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	3 cut(s)	150, 209, 346
HpaII	CCGG	2 cut(s)	156, 186
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188III	TCNNGA	2 cut(s)	127, 203
Hpy8I	GTNNAC	1 cut(s)	213
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	2 cut(s)	62, 99
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 191
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	6 cut(s)	62, 135, 304, 311, 358, 365
HspAI	GCGC	1 cut(s)	183
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	246
LpnPI	CCDG	4 cut(s)	150, 169, 199, 300
Lsp1109I	GCAGC	1 cut(s)	74
MaeI	CTAG	2 cut(s)	143, 170
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	134, 203
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	3 cut(s)	17, 337, 341
MlsI	TGGCCA	1 cut(s)	57
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	7 cut(s)	23, 40, 49, 64, 90, 139, 228
Mox20I	TGGCCA	1 cut(s)	57
MroNI	GCCGGC	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	1 cut(s)	269
Msp20I	TGGCCA	1 cut(s)	57
MspCI	CTTAAG	1 cut(s)	268
MspI	CCGG	2 cut(s)	156, 186
MwoI	GCNNNNNNNGC	2 cut(s)	25, 191
NaeI	GCCGGC	1 cut(s)	157
NdeII	GATC	1 cut(s)	246
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	6 cut(s)	62, 135, 304, 311, 358, 365
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	135
NspV	TTCGAA	1 cut(s)	289
PciI	ACATGT	1 cut(s)	131
PdiI	GCCGGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	150, 346
PflMI	CCANNNNNTGG	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	296
PscI	ACATGT	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	2 cut(s)	225, 296
PspPPI	RGGWCCY	1 cut(s)	296
SalI	GTCGAC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	2 cut(s)	225, 296
SchI	GAGTC	1 cut(s)	218
SetI	ASST	5 cut(s)	51, 75, 105, 275, 332
SfuI	TTCGAA	1 cut(s)	289
SinI	GGWCC	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SspMI	CTAG	2 cut(s)	143, 170
TaaI	ACNGT	1 cut(s)	264
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	5 cut(s)	126, 175, 212, 249, 289
TfiI	GAWTC	2 cut(s)	150, 346
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	203
Van91I	CCANNNNNTGG	1 cut(s)	222
Vha464I	CTTAAG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	296
XceI	RCATGY	1 cut(s)	135
XmiI	GTMKAC	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	2 cut(s)	143, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.