Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001280

Physical Location & Seq

Genomic Coordinates Forward (+)

9939126 .. 9939626

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1112400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGGAAGAAGAAGATCAGAAGCAGTCCAAATGGCAAGGCAACGCCTCCGCCGAGCTGAAACGCACGGCAGCGGAGCAAGCCTGGCCGGCCCTGGCCGATTTCTGCAACTTACACAAGTGGTTCCCAAATCTTGCCACGTGTCGCCAAGTGGAGGGCATCCCTGGCCAGCCAGGTGTGATCCGGTACTGCGCGAGTGCACCTGTTGATAATGATGAGTCCAGCATCAAGTGGGCTAAAGAGAAGTTGTTGACCATTGATCCGATCCAACGGTGCTTGAGCTACGAGGTCACGGAGAGCAATCTCGGGTTTAAGTCGTACGTTTCAACAATGCAAGTAGTTGCGATGGACGGCGGAGGTGGGTGCAAGATTGAGTGGTCGTTTGTTTGCGATCCGATCGAAGGGTTGCGGTTGGATGAATTTCTTTCATATCTTGATTCTTCTCTTCAACTGATGGGAAAGGCGATCATGGAGCATGCTCCTCCATCTACTGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

167

Amino Acids

18.44

Weight (kDa)

4.7

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	19 - 141	3.1e-21	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32870
fragaria_vesca	FvH4_2g35410 FvH4_2g35420 FvH4_7g16550
malus_domestica	MD08G1112200.v1.1 MD08G1112400.v1.1 MD15G1091600.v1.1
prunus_persica	Prupe.1G446300_v2.0.a1 Prupe.1G446400_v2.0.a1 Prupe.1G446600_v2.0.a1
pyrus_communis	pycom08g09320 pycom08g09330
rosa_chinensis	RchiOBHm_Chr1g0359611 RchiOBHm_Chr6g0306471 RchiOBHm_Chr6g0306481 RchiOBHm_Chr6g0306491 RchiOBHm_Chr7g0223821
rosa_laevigata	RLG00000001927 RLG00000010792 RLG00000010793 RLG00000010794 RLG00000027858
rosa_multiflora	Rmu_co8209076.1_g000001 Rmu_sc0002971.1_g000012 Rmu_sc0002971.1_g000013 Rmu_sc0013097.1_g000009
rosa_roxburghii	Rroxscaffold_3G00235260 Rroxscaffold_4G00296890 Rroxscaffold_7G00161730 Rroxscaffold_7G00161740
rosa_rugosa	Rorug01G0272300 Rorug06G0349800 Rorug06G0349900 Rorug06G0349900 Rorug07G0220700
rosa_samantha	Rh1AG286000 Rh1BG252200 Rh1CG269400 Rh1DG281300 Rh6AG461900 Rh6AG462000 Rh6BG438800 Rh6BG438900 Rh6BG439100 Rh6CG476100 Rh6CG476300 Rh6DG462800 Rh6DG462900 Rh6DG463000 Rh7AG363400 Rh7BG354500 Rh7CG381800
rosa_wichuraiana	Rw1G025410 Rw6G040260 Rw6G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	194
AciI	CCGC	4 cut(s)	51, 74, 354, 409
AclWI	GGATC	4 cut(s)	175, 254, 259, 386
AcoI	YGGCCR	3 cut(s)	86, 96, 166
AcsI	RAATTY	1 cut(s)	419
AcvI	CACGTG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	188, 320
AfiI	CCNNNNNNNGG	2 cut(s)	154, 401
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	327, 449
AjnI	CCWGG	4 cut(s)	83, 93, 163, 172
AluBI	AGCT	2 cut(s)	58, 282
AluI	AGCT	2 cut(s)	58, 282
Alw21I	GWGCWC	1 cut(s)	202
Alw44I	GTGCAC	1 cut(s)	198
AlwI	GGATC	4 cut(s)	175, 254, 259, 386
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	4 cut(s)	86, 90, 96, 166
ApaLI	GTGCAC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	202
BalI	TGGCCA	1 cut(s)	168
BbrPI	CACGTG	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	3 cut(s)	340, 448, 493
BceAI	ACGGC	2 cut(s)	84, 367
BciT130I	CCWGG	4 cut(s)	85, 95, 165, 174
BglI	GCCNNNNNGGC	1 cut(s)	89
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	4 cut(s)	85, 95, 165, 174
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	4 cut(s)	85, 95, 165, 174
BmsI	GCATC	2 cut(s)	168, 234
BpuEI	CTTGAG	1 cut(s)	298
BsaAI	YACGTR	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	93, 163
BsaWI	WCCGGW	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 401
Bse118I	RCCGGY	1 cut(s)	88
BseBI	CCWGG	4 cut(s)	85, 95, 165, 174
BseDI	CCNNGG	2 cut(s)	93, 163
BseGI	GGATG	2 cut(s)	159, 421
BseLI	CCNNNNNNNGG	2 cut(s)	154, 401
BseRI	GAGGAG	1 cut(s)	471
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	194
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	4 cut(s)	88, 92, 98, 168
BsiEI	CGRYCG	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	2 cut(s)	89, 184
BsiWI	CGTACG	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	154, 401
BsnI	GGCC	4 cut(s)	88, 92, 98, 168
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	7 cut(s)	16, 180, 259, 264, 391, 396, 465
BspACI	CCGC	4 cut(s)	51, 74, 354, 409
BspANI	GGCC	4 cut(s)	88, 92, 98, 168
BspFNI	CGCG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	4 cut(s)	175, 254, 259, 386
BsrFI	RCCGGY	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	93, 163
BssMI	GATC	7 cut(s)	16, 180, 259, 264, 391, 396, 465
Bst2UI	CCWGG	4 cut(s)	85, 95, 165, 174
Bst4CI	ACNGT	1 cut(s)	273
Bst6I	CTCTTC	1 cut(s)	450
BstBAI	YACGTR	1 cut(s)	141
BstC8I	GCNNGC	4 cut(s)	81, 90, 170, 477
BstF5I	GGATG	2 cut(s)	159, 421
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	7 cut(s)	19, 183, 262, 267, 394, 399, 468
BstMBI	GATC	7 cut(s)	16, 180, 259, 264, 391, 396, 465
BstMCI	CGRYCG	1 cut(s)	399
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 85, 89, 165
BstNI	CCWGG	4 cut(s)	85, 95, 165, 174
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	4 cut(s)	83, 93, 163, 172
BstSLI	GKGCMC	1 cut(s)	202
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	83
BsuRI	GGCC	4 cut(s)	88, 92, 98, 168
BtgZI	GCGATG	1 cut(s)	359
BtsCI	GGATG	2 cut(s)	159, 421
Cac8I	GCNNGC	4 cut(s)	81, 90, 170, 477
CfoI	GCGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	187, 319
CviAII	CATG	2 cut(s)	469, 476
CviJI	RGCY	9 cut(s)	58, 83, 88, 92, 98, 168, 172, 236, 282
CviKI_1	RGCY	9 cut(s)	58, 83, 88, 92, 98, 168, 172, 236, 282
CviQI	GTAC	2 cut(s)	187, 319
DpnI	GATC	7 cut(s)	18, 182, 261, 266, 393, 398, 467
DpnII	GATC	7 cut(s)	16, 180, 259, 264, 391, 396, 465
EaeI	YGGCCR	3 cut(s)	86, 96, 166
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
EciI	GGCGGA	2 cut(s)	40, 369
Eco72I	CACGTG	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	305
EcoRII	CCWGG	4 cut(s)	83, 93, 163, 172
FaeI	CATG	2 cut(s)	472, 479
FaiI	YATR	3 cut(s)	430, 470, 477
FatI	CATG	2 cut(s)	468, 475
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	2 cut(s)	146, 428
FseI	GGCCGGCC	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	72
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	72
HaeIII	GGCC	4 cut(s)	88, 92, 98, 168
HapII	CCGG	2 cut(s)	89, 184
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	472, 479
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	2 cut(s)	218, 437
HpaII	CCGG	2 cut(s)	89, 184
Hpy166II	GTNNAC	2 cut(s)	200, 252
Hpy188I	TCNGA	3 cut(s)	21, 264, 396
Hpy188III	TCNNGA	1 cut(s)	434
Hpy8I	GTNNAC	2 cut(s)	200, 252
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4IV	ACGT	2 cut(s)	140, 321
HpyCH4V	TGCA	4 cut(s)	108, 200, 334, 366
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 85, 89, 165
HpySE526I	ACGT	2 cut(s)	140, 321
Hsp92II	CATG	2 cut(s)	472, 479
HspAI	GCGC	1 cut(s)	192
KroI	GCCGGC	1 cut(s)	88
KroNI	GCCGGC	1 cut(s)	90
Kzo9I	GATC	7 cut(s)	16, 180, 259, 264, 391, 396, 465
LmnI	GCTCC	3 cut(s)	76, 472, 484
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	2 cut(s)	168, 234
MaeII	ACGT	2 cut(s)	140, 321
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	7 cut(s)	18, 182, 261, 266, 393, 398, 467
MboI	GATC	7 cut(s)	16, 180, 259, 264, 391, 396, 465
MboII	GAAGA	5 cut(s)	20, 23, 26, 432, 437
MhlI	GDGCHC	1 cut(s)	202
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	2 cut(s)	419, 496
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	2 cut(s)	292, 393
MnlI	CCTC	5 cut(s)	58, 148, 280, 350, 492
Mox20I	TGGCCA	1 cut(s)	168
MroNI	GCCGGC	1 cut(s)	88
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	1 cut(s)	312
Msp20I	TGGCCA	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	2 cut(s)	89, 184
MspR9I	CCNGG	4 cut(s)	85, 95, 165, 174
MvaI	CCWGG	4 cut(s)	85, 95, 165, 174
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	4 cut(s)	80, 85, 89, 165
NaeI	GCCGGC	1 cut(s)	90
NdeII	GATC	7 cut(s)	16, 180, 259, 264, 391, 396, 465
NgoMIV	GCCGGC	1 cut(s)	88
NlaIII	CATG	2 cut(s)	472, 479
NlaIV	GGNNCC	1 cut(s)	125
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	479
PaeI	GCATGC	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	437
Pfl23II	CGTACG	1 cut(s)	318
PkrI	GCNGC	1 cut(s)	73
Ple19I	CGATCG	1 cut(s)	399
PleI	GAGTC	1 cut(s)	226
PmaCI	CACGTG	1 cut(s)	141
PmlI	CACGTG	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	226
Ppu21I	YACGTR	1 cut(s)	141
Psp6I	CCWGG	4 cut(s)	83, 93, 163, 172
PspCI	CACGTG	1 cut(s)	141
PspGI	CCWGG	4 cut(s)	83, 93, 163, 172
PspLI	CGTACG	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	399
RigI	GGCCGGCC	1 cut(s)	92
RsaI	GTAC	2 cut(s)	188, 320
RsaNI	GTAC	2 cut(s)	187, 319
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	7 cut(s)	16, 180, 259, 264, 391, 396, 465
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	4 cut(s)	85, 95, 165, 174
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	8 cut(s)	60, 143, 178, 205, 284, 291, 324, 361
SfaNI	GCATC	2 cut(s)	168, 234
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
SphI	GCATGC	1 cut(s)	479
Sse9I	AATT	2 cut(s)	419, 496
SsiI	CCGC	4 cut(s)	51, 74, 354, 409
StyD4I	CCNGG	4 cut(s)	83, 93, 163, 172
TaaI	ACNGT	1 cut(s)	273
TaiI	ACGT	2 cut(s)	143, 324
TaqI	TCGA	1 cut(s)	399
TasI	AATT	2 cut(s)	419, 496
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	417, 432
TspGWI	ACGGA	1 cut(s)	308
VneI	GTGCAC	1 cut(s)	198
XapI	RAATTY	1 cut(s)	419
XceI	RCATGY	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.