Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001280

Physical Location & Seq

Genomic Coordinates Reverse (-)

26116331 .. 26116843

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGCTCAGAGGTTCAGGCAGAGCCGAAATGGGAAGGCAAAACCTCAGCCGAGCTCAAAACCTCACCACCACAAGAGGTCTGGCCTTTCCTAGCCGATTTCTGCAACTTACACAGAATCTTCCCTGGCGTTGAAACTTGCTCCCAAGTCGAGGGAGTCCCCGGCCAGCCGGGTCTGATCCGGTACTGCGCCGGACCGGCTACCGATAACGACGAGACCACAGTTAAGTGGGTCAAAGAGAAGCTGATCGCGGTTGATCCGATCAAACGATGCTTGAGTTACGAGGTCGTTGATAGTAACATGGGGTTCAAGTCGTATGTTGCAACCATTCAAGTGGTTCCGGTGAAAAACAACGACGAAGAAGGGTGCGTTATCGAGTGGTCATTTGTTTGTGATCCGATGGAAGGGTGGAGAGGGGAGGACTTCCGGTCTTATGTGGAGGCTACTATACAAGGGATGGCAAAGAAAATTGAAGATGCTCTTCTCTCTAGTAGTACTAGTGCTGCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

171

Amino Acids

18.77

Weight (kDa)

4.6

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	20 - 159	3.9e-24	Polyketide cyclase / dehydrase and lipid transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32870
fragaria_vesca	FvH4_2g35410 FvH4_2g35420 FvH4_7g16550
malus_domestica	MD08G1112200.v1.1 MD08G1112400.v1.1 MD15G1091600.v1.1
prunus_persica	Prupe.1G446300_v2.0.a1 Prupe.1G446400_v2.0.a1 Prupe.1G446600_v2.0.a1
pyrus_communis	pycom08g09320 pycom08g09330
rosa_chinensis	RchiOBHm_Chr1g0359611 RchiOBHm_Chr6g0306471 RchiOBHm_Chr6g0306481 RchiOBHm_Chr6g0306491 RchiOBHm_Chr7g0223821
rosa_laevigata	RLG00000001927 RLG00000010792 RLG00000010793 RLG00000010794 RLG00000027858
rosa_multiflora	Rmu_co8209076.1_g000001 Rmu_sc0002971.1_g000012 Rmu_sc0002971.1_g000013 Rmu_sc0013097.1_g000009
rosa_roxburghii	Rroxscaffold_3G00235260 Rroxscaffold_4G00296890 Rroxscaffold_7G00161730 Rroxscaffold_7G00161740
rosa_rugosa	Rorug01G0272300 Rorug06G0349800 Rorug06G0349900 Rorug06G0349900 Rorug07G0220700
rosa_samantha	Rh1AG286000 Rh1BG252200 Rh1CG269400 Rh1DG281300 Rh6AG461900 Rh6AG462000 Rh6BG438800 Rh6BG438900 Rh6BG439100 Rh6CG476100 Rh6CG476300 Rh6DG462800 Rh6DG462900 Rh6DG463000 Rh7AG363400 Rh7BG354500 Rh7CG381800
rosa_wichuraiana	Rw1G025410 Rw6G040260 Rw6G040270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	251
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	3 cut(s)	172, 251, 389
AcoI	YGGCCR	1 cut(s)	163
AfaI	GTAC	2 cut(s)	185, 496
AfiI	CCNNNNNNNGG	2 cut(s)	151, 404
AgsI	TTSAA	4 cut(s)	134, 310, 332, 473
AhdI	GACNNNNNGTC	1 cut(s)	427
AhlI	ACTAGT	1 cut(s)	497
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	2 cut(s)	55, 244
AluI	AGCT	2 cut(s)	55, 244
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	3 cut(s)	172, 251, 389
AoxI	GGCC	2 cut(s)	83, 163
ApeKI	GCWGC	1 cut(s)	503
AspLEI	GCGC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	194
AsuC2I	CCSGG	2 cut(s)	162, 171
AsuHPI	GGTGA	2 cut(s)	57, 355
AvaII	GGWCC	1 cut(s)	194
BanII	GRGCYC	2 cut(s)	8, 57
Bbv12I	GWGCWC	1 cut(s)	57
BbvCI	CCTCAGC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	490
BccI	CCATC	2 cut(s)	394, 451
BciT130I	CCWGG	1 cut(s)	126
BcnI	CCSGG	2 cut(s)	162, 171
BcoDI	GTCTC	1 cut(s)	209
BcuI	ACTAGT	1 cut(s)	497
BfaI	CTAG	3 cut(s)	92, 489, 498
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
BmcAI	AGTACT	1 cut(s)	496
Bme1390I	CCNGG	3 cut(s)	126, 162, 171
Bme18I	GGWCC	1 cut(s)	194
BmeRI	GACNNNNNGTC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	339
BmrFI	CCNGG	3 cut(s)	126, 162, 171
BmsI	GCATC	2 cut(s)	260, 466
Bpu10I	CCTNAGC	1 cut(s)	46
BpuEI	CTTGAG	1 cut(s)	295
BpuMI	CCSGG	2 cut(s)	162, 171
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	124, 160
BsaWI	WCCGGW	3 cut(s)	180, 340, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 404
Bse118I	RCCGGY	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	124, 160
BseGI	GGATG	1 cut(s)	462
BseLI	CCNNNNNNNGG	2 cut(s)	151, 404
BseMII	CTCAG	2 cut(s)	21, 60
BseXI	GCAGC	1 cut(s)	490
Bsh1236I	CGCG	1 cut(s)	251
BshFI	GGCC	2 cut(s)	85, 165
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	7 cut(s)	162, 170, 181, 192, 197, 341, 427
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	2 cut(s)	151, 404
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	85, 165
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	8, 57
Bsp143I	GATC	5 cut(s)	177, 246, 256, 261, 394
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	2 cut(s)	85, 165
BspCNI	CTCAG	2 cut(s)	20, 59
BspFNI	CGCG	1 cut(s)	251
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	3 cut(s)	172, 251, 389
BspQI	GCTCTTC	1 cut(s)	486
BspTNI	GGTCTC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	124, 160
BssMI	GATC	5 cut(s)	177, 246, 256, 261, 394
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	486
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	2 cut(s)	7, 46
BstF5I	GGATG	1 cut(s)	462
BstFNI	CGCG	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	191
BstKTI	GATC	5 cut(s)	180, 249, 259, 264, 397
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	5 cut(s)	177, 246, 256, 261, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	3 cut(s)	124, 160, 169
BstUI	CGCG	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	490
BstXI	CCANNNNNNTGG	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	85, 165
BtsCI	GGATG	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	167
CfoI	GCGC	1 cut(s)	191
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	194
CpoI	CGGWCCG	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	184, 495
CspI	CGGWCCG	1 cut(s)	194
CviAII	CATG	1 cut(s)	301
CviQI	GTAC	2 cut(s)	184, 495
DdeI	CTNAG	2 cut(s)	7, 46
DpnI	GATC	5 cut(s)	179, 248, 258, 263, 396
DpnII	GATC	5 cut(s)	177, 246, 256, 261, 394
DriI	GACNNNNNGTC	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	486
Eam1105I	GACNNNNNGTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	486
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	2 cut(s)	8, 57
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	124
EcoT38I	GRGCYC	2 cut(s)	8, 57
FaeI	CATG	1 cut(s)	304
FaiI	YATR	5 cut(s)	302, 318, 435, 449, 511
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	1 cut(s)	469
FriOI	GRGCYC	2 cut(s)	8, 57
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	3 cut(s)	92, 489, 498
GlaI	GCGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	85, 165
HapII	CCGG	7 cut(s)	162, 170, 181, 192, 197, 341, 427
HhaI	GCGC	1 cut(s)	191
Hin1II	CATG	1 cut(s)	304
Hin6I	GCGC	1 cut(s)	189
HinP1I	GCGC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	117, 156
HpaII	CCGG	7 cut(s)	162, 170, 181, 192, 197, 341, 427
HphI	GGTGA	2 cut(s)	57, 355
Hpy188I	TCNGA	4 cut(s)	10, 177, 261, 399
Hpy99I	CGWCG	2 cut(s)	215, 359
HpyAV	CCTTC	3 cut(s)	29, 356, 398
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	2 cut(s)	105, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	7, 46
Hsp92II	CATG	1 cut(s)	304
HspAI	GCGC	1 cut(s)	189
Kzo9I	GATC	5 cut(s)	177, 246, 256, 261, 394
LguI	GCTCTTC	1 cut(s)	486
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	1 cut(s)	490
LweI	GCATC	2 cut(s)	260, 466
MaeI	CTAG	3 cut(s)	92, 489, 498
MaeIII	GTNAC	2 cut(s)	278, 296
MalI	GATC	5 cut(s)	179, 248, 258, 263, 396
MboI	GATC	5 cut(s)	177, 246, 256, 261, 394
MboII	GAAGA	4 cut(s)	112, 371, 473, 485
MhlI	GDGCHC	2 cut(s)	8, 57
MluCI	AATT	1 cut(s)	468
MlyI	GAGTC	1 cut(s)	165
MnlI	CCTC	9 cut(s)	4, 55, 70, 73, 145, 277, 407, 412, 433
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	332
MspI	CCGG	7 cut(s)	162, 170, 181, 192, 197, 341, 427
MspR9I	CCNGG	3 cut(s)	126, 162, 171
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	2 cut(s)	162, 171
NdeII	GATC	5 cut(s)	177, 246, 256, 261, 394
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	1 cut(s)	339
NmeAIII	GCCGAG	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	505
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	194
RsaI	GTAC	2 cut(s)	185, 496
RsaNI	GTAC	2 cut(s)	184, 495
RseI	CAYNNNNRTG	1 cut(s)	332
Rsr2I	CGGWCCG	1 cut(s)	194
RsrII	CGGWCCG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	5 cut(s)	177, 246, 256, 261, 394
Sau96I	GGNCC	1 cut(s)	194
ScaI	AGTACT	1 cut(s)	496
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	3 cut(s)	126, 162, 171
SduI	GDGCHC	2 cut(s)	8, 57
SetI	ASST	7 cut(s)	15, 47, 57, 65, 81, 246, 288
SfaNI	GCATC	2 cut(s)	260, 466
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
SpeI	ACTAGT	1 cut(s)	497
Sse9I	AATT	1 cut(s)	468
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	3 cut(s)	92, 489, 498
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	3 cut(s)	124, 160, 169
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	150, 375
TasI	AATT	1 cut(s)	468
TatI	WGTACW	1 cut(s)	494
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TseI	GCWGC	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	78
XspI	CTAG	3 cut(s)	92, 489, 498
ZrmI	AGTACT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.