AT4G33840

glycosyl hydrolase family 10 protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
16223501 .. 16226153
2653 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33840.1

Sequence Viewer

Length: 1731 bp
ATGAAGCTTCTACTGTTGCTGCTTGCCTTCTGCTGTCTATCTCTATCAAGGTGTGAAGAACAATCCGTCCCTTATGATTACTCGGCAACAATAGAGTGTCTAGAGAACCCTTATAAACCACAGTACAATGGAGGGATCATCGTGAATCCTGACTTGCAAAATGGTTCACAAGGCTGGTCACAGTTTGGAAACGCCAAAGTCGATTTCAGAGAATTTGGAGGCAATAAGTTTGTTGTTGCCACACAAAGGAATCAATCTTCTGACAGCATCTCGCAGAAGGTGTACTTGGAAAAAGGAATTCTCTACACTTTCTCTGCTTGGTTACAAGTGAGCATAGGAAAATCTCCCGTGAGCGCTGTTTTCAAGAAGAATGGTGAATATAAGCATGCCGGTTCGGTTGTTGCTGAATCCAAATGTTGGTCCATGCTGAAAGGTGGTCTCACTGTTGATGAATCTGGTCCTGCTGAACTCTTCTTCGAGAGCGAGAACACAATGGTTGAGATTTGGGTTGATAGCGTCTCTTTGCAACCTTTCACACAAGAAGAGTGGAACTCTCACCACGAACAGAGCATTGGCAAAGTAAGAAAAGGTACCGTGAGAATCAGAGTCATGAATAACAAAGGCGAGACGATACCTAATGCAACCATATCCATAGAACAGAAGAAACTCGGATACCCATTCGGGTGCGCGGTAGAAAACAACATACTTGGGAATCAAGCATACCAAAACTGGTTCACTCAAAGATTTACCGTGACAACTTTCGGGAACGAGATGAAATGGTACAGCACAGAAAGAATAAGAGGGCAAGAGGATTACTCGACAGCTGACGCGATGTTAAGTTTCTTCAAGAGCCACGGGATTGCTGTACGTGGGCACAATGTTTTATGGGATGATCCTAAGTACCAACCTGGATGGGTGAATTCTCTGTCTGGTAACGACCTCTACAACGCTGTGAAACGAAGGGTTTACTCGGTTGTCTCGCGATACAAAGGACAGCTTTTGGGTTGGGATGTTGTGAATGAGAATCTTCATTTCTCCTTCTTTGAGAGCAAGTTCGGTCCTAAAGCCTCTTATAACACCTACACAATGGCCCATGCCGTCGATCCAAGGACACCAATGTTCATGAATGAATATAATACGTTAGAGCAACCTAAGGATTTAACTTCTAGTCCAGCAAGGTATTTGGGAAAGCTTAGGGAGCTTCAATCTATTCGGGTTGCCGGAAAGATTCCGTTAGCGATAGGTCTTGAGTCTCATTTCAGCACTCCTAACATTCCGTATATGAGATCAGCTCTTGATACTTTTGGTGCCACTGGTTTGCCTATTTGGCTCACTGAGATTGACGTTGATGCGCCTCCCAATGTCCGGGCCAACTATTTCGAGCAAGTTCTAAGGGAAGGCCATGCACATCCGAAAGTGAATGGAATGGTGATGTGGACAGGTTATTCTCCATCAGGTTGCTACCGAATGTGCCTCACCGATGGAAACTTTAAGAACCTACCCACTGGAGACGTCGTGGACAAGCTTTTACGTGAATGGGGAGGGCTTCGCAGCCAAACCACAGGTGTCACTGATGCTAATGGGTTATTTGAAGCTCCACTCTTTCATGGTGACTATGATCTCCGTATATCCCATCCTCTCACCAATTCAAAGGCTTCTTACAACTTTACGTTGACTTCCGATGACGACTCCTCACAGAAACAACCATCTCTATATGTCTTTCGTGTTTGA

Protein Analysis

576

Amino Acids

64.88

Weight (kDa)

6.65

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBM_4_9 PF02018 45 - 156 6.6e-07 Carbohydrate binding domain
Glyco_hydro_10 PF00331 222 - 480 2.4e-41 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 114, 1074
AatII GACGTC 1 cut(s) 1515
Acc65I GGTACC 1 cut(s) 590
AccB1I GGYRCC 2 cut(s) 590, 1307
AccB7I CCANNNNNTGG 1 cut(s) 417
AccII CGCG 3 cut(s) 689, 830, 982
AciI CCGC 1 cut(s) 689
AclWI GGATC 3 cut(s) 143, 887, 1097
AcsI RAATTY 3 cut(s) 212, 297, 919
AcyI GRCGYC 1 cut(s) 1512
AfaI GTAC 6 cut(s) 125, 284, 592, 782, 867, 902
AfeI AGCGCT 1 cut(s) 355
AfiI CCNNNNNNNGG 3 cut(s) 246, 417, 1365
AgsI TTSAA 5 cut(s) 364, 847, 1205, 1592, 1650
AjnI CCWGG 1 cut(s) 907
AjuI GAANNNNNNNTTGG 6 cut(s) 188, 220, 269, 301, 555, 587
AloI GAACNNNNNNTCC 2 cut(s) 51, 83
AluBI AGCT 8 cut(s) 7, 824, 997, 1192, 1201, 1292, 1525, 1595
AluI AGCT 8 cut(s) 7, 824, 997, 1192, 1201, 1292, 1525, 1595
Alw26I GTCTC 6 cut(s) 443, 523, 620, 982, 1257, 1503
AlwI GGATC 3 cut(s) 143, 887, 1097
Aor51HI AGCGCT 1 cut(s) 355
AoxI GGCC 3 cut(s) 1089, 1368, 1399
ApeKI GCWGC 2 cut(s) 19, 1551
ApoI RAATTY 3 cut(s) 212, 297, 919
Asp718I GGTACC 1 cut(s) 590
AspLEI GCGC 3 cut(s) 356, 689, 1354
AspS9I GGNCC 5 cut(s) 420, 458, 1058, 1090, 1368
AsuC2I CCSGG 1 cut(s) 1367
AsuHPI GGTGA 7 cut(s) 386, 548, 928, 1441, 1468, 1622, 1633
AvaII GGWCC 3 cut(s) 420, 458, 1058
AxyI CCTNAGG 1 cut(s) 1152
BaeGI GKGCMC 1 cut(s) 876
BanI GGYRCC 2 cut(s) 590, 1307
BbvI GCAGC 2 cut(s) 6, 1563
BccI CCATC 5 cut(s) 906, 1459, 1475, 1641, 1714
BceAI ACGGC 1 cut(s) 1082
BciT130I CCWGG 1 cut(s) 909
BciVI GTATCC 1 cut(s) 665
BcnI CCSGG 1 cut(s) 1367
BcoDI GTCTC 6 cut(s) 443, 523, 620, 982, 1257, 1503
BfaI CTAG 2 cut(s) 101, 1167
BfoI RGCGCY 1 cut(s) 357
BfuI GTATCC 1 cut(s) 665
BglI GCCNNNNNGGC 1 cut(s) 1327
BisI GCNGC 2 cut(s) 20, 1552
BlsI GCNGC 2 cut(s) 21, 1553
Bme1390I CCNGG 2 cut(s) 909, 1367
Bme18I GGWCC 3 cut(s) 420, 458, 1058
BmgT120I GGNCC 5 cut(s) 420, 458, 1058, 1090, 1368
BmiI GGNNCC 2 cut(s) 592, 1309
BmrFI CCNGG 2 cut(s) 909, 1367
BmsI GCATC 3 cut(s) 276, 1339, 1564
BplI GAGNNNNNCTC 6 cut(s) 536, 568, 800, 832, 1276, 1308
BpmI CTGGAG 1 cut(s) 1527
Bpu10I CCTNAGC 1 cut(s) 1193
BpuEI CTTGAG 1 cut(s) 1268
BpuMI CCSGG 1 cut(s) 1367
BsaAI YACGTR 2 cut(s) 869, 1532
BsaHI GRCGYC 1 cut(s) 1512
BsaI GGTCTC 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 853, 1106
BsaXI ACNNNNNCTCC 2 cut(s) 1500, 1530
Bsc4I CCNNNNNNNGG 3 cut(s) 246, 417, 1365
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 3 cut(s) 734, 1318, 1510
Bse21I CCTNAGG 1 cut(s) 1152
BseBI CCWGG 1 cut(s) 909
BseDI CCNNGG 2 cut(s) 853, 1106
BseGI GGATG 5 cut(s) 895, 917, 1015, 1408, 1633
BseLI CCNNNNNNNGG 3 cut(s) 246, 417, 1365
BseMII CTCAG 1 cut(s) 1326
BseNI ACTGG 3 cut(s) 734, 1318, 1510
BseRI GAGGAG 1 cut(s) 1681
BseSI GKGCMC 1 cut(s) 876
BseXI GCAGC 2 cut(s) 6, 1563
Bsh1236I CGCG 3 cut(s) 689, 830, 982
BshFI GGCC 3 cut(s) 1091, 1370, 1401
BshNI GGYRCC 2 cut(s) 590, 1307
BsiSI CCGG 3 cut(s) 390, 1221, 1366
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 3 cut(s) 246, 417, 1365
BsmAI GTCTC 6 cut(s) 443, 523, 620, 982, 1257, 1503
BsmBI CGTCTC 3 cut(s) 523, 620, 1503
BsmFI GGGAC 1 cut(s) 53
BsnI GGCC 3 cut(s) 1091, 1370, 1401
Bso31I GGTCTC 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 876
Bsp143I GATC 5 cut(s) 135, 892, 1102, 1286, 1618
Bsp68I TCGCGA 1 cut(s) 982
BspACI CCGC 1 cut(s) 689
BspANI GGCC 3 cut(s) 1091, 1370, 1401
BspCNI CTCAG 1 cut(s) 1327
BspFNI CGCG 3 cut(s) 689, 830, 982
BspHI TCATGA 2 cut(s) 609, 1122
BspLI GGNNCC 2 cut(s) 592, 1309
BspPI GGATC 3 cut(s) 143, 887, 1097
BspT107I GGYRCC 2 cut(s) 590, 1307
BspTNI GGTCTC 1 cut(s) 443
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 3 cut(s) 734, 1318, 1510
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 853, 1106
BssMI GATC 5 cut(s) 135, 892, 1102, 1286, 1618
BssNI GRCGYC 1 cut(s) 1512
BssT1I CCWWGG 1 cut(s) 1106
Bst2UI CCWGG 1 cut(s) 909
Bst4CI ACNGT 6 cut(s) 15, 123, 183, 445, 595, 751
Bst6I CTCTTC 2 cut(s) 476, 537
BstACI GRCGYC 1 cut(s) 1512
BstBAI YACGTR 2 cut(s) 869, 1532
BstC8I GCNNGC 2 cut(s) 24, 387
BstDEI CTNAG 5 cut(s) 897, 1152, 1193, 1335, 1391
BstDSI CCRYGG 1 cut(s) 853
BstF5I GGATG 5 cut(s) 895, 917, 1015, 1408, 1633
BstFNI CGCG 3 cut(s) 689, 830, 982
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 3 cut(s) 356, 689, 1354
BstKTI GATC 5 cut(s) 138, 895, 1105, 1289, 1621
BstMAI GTCTC 6 cut(s) 443, 523, 620, 982, 1257, 1503
BstMBI GATC 5 cut(s) 135, 892, 1102, 1286, 1618
BstMWI GCNNNNNNNGC 2 cut(s) 1198, 1327
BstNI CCWGG 1 cut(s) 909
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 2 cut(s) 907, 1365
BstSLI GKGCMC 1 cut(s) 876
BstUI CGCG 3 cut(s) 689, 830, 982
BstV1I GCAGC 2 cut(s) 6, 1563
Bsu36I CCTNAGG 1 cut(s) 1152
BsuI GTATCC 1 cut(s) 665
BsuRI GGCC 3 cut(s) 1091, 1370, 1401
BtgI CCRYGG 1 cut(s) 853
BtgZI GCGATG 1 cut(s) 845
BtsCI GGATG 5 cut(s) 895, 917, 1015, 1408, 1633
BtsIMutI CAGTG 5 cut(s) 441, 1311, 1332, 1503, 1569
BtuMI TCGCGA 1 cut(s) 982
Cac8I GCNNGC 2 cut(s) 24, 387
CciI TCATGA 2 cut(s) 609, 1122
CfoI GCGC 3 cut(s) 356, 689, 1354
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 5 cut(s) 420, 458, 1058, 1090, 1368
CseI GACGC 2 cut(s) 505, 836
Csp6I GTAC 6 cut(s) 124, 283, 591, 781, 866, 901
CspCI CAANNNNNGTGG 2 cut(s) 527, 562
CviAII CATG 7 cut(s) 386, 424, 610, 1094, 1123, 1403, 1607
CviQI GTAC 6 cut(s) 124, 283, 591, 781, 866, 901
DdeI CTNAG 5 cut(s) 897, 1152, 1193, 1335, 1391
DpnI GATC 5 cut(s) 137, 894, 1104, 1288, 1620
DpnII GATC 5 cut(s) 135, 892, 1102, 1286, 1618
Eam1104I CTCTTC 2 cut(s) 476, 537
EarI CTCTTC 2 cut(s) 476, 537
Eco130I CCWWGG 1 cut(s) 1106
Eco31I GGTCTC 1 cut(s) 443
Eco47I GGWCC 3 cut(s) 420, 458, 1058
Eco47III AGCGCT 1 cut(s) 355
Eco81I CCTNAGG 1 cut(s) 1152
EcoRI GAATTC 2 cut(s) 297, 919
EcoRII CCWGG 1 cut(s) 907
EcoT14I CCWWGG 1 cut(s) 1106
ErhI CCWWGG 1 cut(s) 1106
Esp3I CGTCTC 3 cut(s) 523, 620, 1503
FaeI CATG 7 cut(s) 389, 427, 613, 1097, 1126, 1406, 1610
FalI AAGNNNNNCTT 4 cut(s) 269, 301, 981, 1013
FaqI GGGAC 1 cut(s) 53
FatI CATG 7 cut(s) 385, 423, 609, 1093, 1122, 1402, 1606
Fnu4HI GCNGC 2 cut(s) 20, 1552
FokI GGATG 5 cut(s) 902, 924, 1022, 1395, 1620
Fsp4HI GCNGC 2 cut(s) 20, 1552
FspBI CTAG 2 cut(s) 101, 1167
GlaI GCGC 3 cut(s) 355, 688, 1353
GluI GCNGC 2 cut(s) 20, 1552
GsuI CTGGAG 1 cut(s) 1527
HaeII RGCGCY 1 cut(s) 357
HaeIII GGCC 3 cut(s) 1091, 1370, 1401
HapII CCGG 3 cut(s) 390, 1221, 1366
HgaI GACGC 2 cut(s) 505, 836
HhaI GCGC 3 cut(s) 356, 689, 1354
Hin1I GRCGYC 1 cut(s) 1512
Hin1II CATG 7 cut(s) 389, 427, 613, 1097, 1126, 1406, 1610
Hin6I GCGC 3 cut(s) 354, 687, 1352
HinP1I GCGC 3 cut(s) 354, 687, 1352
HincII GTYRAC 1 cut(s) 1674
HindII GTYRAC 1 cut(s) 1674
HindIII AAGCTT 3 cut(s) 5, 1190, 1523
HpaII CCGG 3 cut(s) 390, 1221, 1366
HphI GGTGA 7 cut(s) 386, 548, 928, 1441, 1468, 1622, 1633
Hpy166II GTNNAC 7 cut(s) 167, 283, 735, 967, 1437, 1519, 1674
Hpy188I TCNGA 6 cut(s) 209, 262, 605, 671, 1413, 1681
Hpy8I GTNNAC 7 cut(s) 167, 283, 735, 967, 1437, 1519, 1674
Hpy99I CGWCG 2 cut(s) 1103, 1517
HpyAV CCTTC 5 cut(s) 37, 271, 954, 1048, 1391
HpyCH4III ACNGT 6 cut(s) 15, 123, 183, 445, 595, 751
HpyCH4IV ACGT 6 cut(s) 868, 1139, 1344, 1512, 1531, 1670
HpyCH4V TGCA 4 cut(s) 157, 526, 641, 1406
HpyF10VI GCNNNNNNNGC 2 cut(s) 1198, 1327
HpyF3I CTNAG 5 cut(s) 897, 1152, 1193, 1335, 1391
HpySE526I ACGT 6 cut(s) 868, 1139, 1344, 1512, 1531, 1670
Hsp92I GRCGYC 1 cut(s) 1512
Hsp92II CATG 7 cut(s) 389, 427, 613, 1097, 1126, 1406, 1610
HspAI GCGC 3 cut(s) 354, 687, 1352
KpnI GGTACC 1 cut(s) 594
Kzo9I GATC 5 cut(s) 135, 892, 1102, 1286, 1618
LmnI GCTCC 2 cut(s) 1198, 1600
Lsp1109I GCAGC 2 cut(s) 6, 1563
LweI GCATC 3 cut(s) 276, 1339, 1564
MaeI CTAG 2 cut(s) 101, 1167
MaeII ACGT 6 cut(s) 868, 1139, 1344, 1512, 1531, 1670
MaeIII GTNAC 6 cut(s) 177, 321, 751, 932, 1567, 1610
MalI GATC 5 cut(s) 137, 894, 1104, 1288, 1620
MboI GATC 5 cut(s) 135, 892, 1102, 1286, 1618
MboII GAAGA 9 cut(s) 68, 249, 379, 463, 466, 554, 673, 835, 1019
MhlI GDGCHC 1 cut(s) 876
MluCI AATT 4 cut(s) 212, 297, 919, 1645
MlyI GAGTC 3 cut(s) 615, 1259, 1682
MseI TTAA 3 cut(s) 836, 1160, 1491
MslI CAYNNNNRTG 1 cut(s) 682
MspA1I CMGCKG 1 cut(s) 824
MspI CCGG 3 cut(s) 390, 1221, 1366
MspR9I CCNGG 2 cut(s) 909, 1367
MvaI CCWGG 1 cut(s) 909
MvnI CGCG 3 cut(s) 689, 830, 982
MwoI GCNNNNNNNGC 2 cut(s) 1198, 1327
NciI CCSGG 1 cut(s) 1367
NdeII GATC 5 cut(s) 135, 892, 1102, 1286, 1618
NlaIII CATG 7 cut(s) 389, 427, 613, 1097, 1126, 1406, 1610
NlaIV GGNNCC 2 cut(s) 592, 1309
NmeAIII GCCGAG 1 cut(s) 62
NmuCI GTSAC 4 cut(s) 177, 751, 1567, 1610
NruI TCGCGA 1 cut(s) 982
NspI RCATGY 1 cut(s) 389
PaeI GCATGC 1 cut(s) 389
PagI TCATGA 2 cut(s) 609, 1122
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PfeI GAWTC 8 cut(s) 145, 250, 407, 452, 600, 712, 1024, 1228
PflMI CCANNNNNTGG 1 cut(s) 417
PkrI GCNGC 2 cut(s) 21, 1553
PleI GAGTC 3 cut(s) 614, 1258, 1682
PpsI GAGTC 3 cut(s) 614, 1258, 1682
Ppu21I YACGTR 2 cut(s) 869, 1532
PsiI TTATAA 2 cut(s) 114, 1074
Psp6I CCWGG 1 cut(s) 907
PspGI CCWGG 1 cut(s) 907
PspN4I GGNNCC 2 cut(s) 592, 1309
PspPI GGNCC 5 cut(s) 420, 458, 1058, 1090, 1368
PvuII CAGCTG 1 cut(s) 824
RruI TCGCGA 1 cut(s) 982
RsaI GTAC 6 cut(s) 125, 284, 592, 782, 867, 902
RsaNI GTAC 6 cut(s) 124, 283, 591, 781, 866, 901
RseI CAYNNNNRTG 1 cut(s) 682
SaqAI TTAA 3 cut(s) 836, 1160, 1491
SatI GCNGC 2 cut(s) 20, 1552
Sau3AI GATC 5 cut(s) 135, 892, 1102, 1286, 1618
Sau96I GGNCC 5 cut(s) 420, 458, 1058, 1090, 1368
SchI GAGTC 3 cut(s) 615, 1259, 1682
ScrFI CCNGG 2 cut(s) 909, 1367
SduI GDGCHC 1 cut(s) 876
SfaNI GCATC 3 cut(s) 276, 1339, 1564
SinI GGWCC 3 cut(s) 420, 458, 1058
SmiMI CAYNNNNRTG 1 cut(s) 682
SmlI CTYRAG 1 cut(s) 1247
SmoI CTYRAG 1 cut(s) 1247
SphI GCATGC 1 cut(s) 389
Sse9I AATT 4 cut(s) 212, 297, 919, 1645
SsiI CCGC 1 cut(s) 689
SspMI CTAG 2 cut(s) 101, 1167
StyD4I CCNGG 2 cut(s) 907, 1365
StyI CCWWGG 1 cut(s) 1106
TaaI ACNGT 6 cut(s) 15, 123, 183, 445, 595, 751
TaiI ACGT 6 cut(s) 871, 1142, 1347, 1515, 1534, 1673
TaqI TCGA 5 cut(s) 201, 477, 818, 1101, 1380
TaqII GACCGA 1 cut(s) 1046
TasI AATT 4 cut(s) 212, 297, 919, 1645
TatI WGTACW 2 cut(s) 123, 282
TfiI GAWTC 8 cut(s) 145, 250, 407, 452, 600, 712, 1024, 1228
Tru1I TTAA 3 cut(s) 836, 1160, 1491
Tru9I TTAA 3 cut(s) 836, 1160, 1491
TscAI CASTG 5 cut(s) 448, 1318, 1339, 1510, 1576
TseFI GTSAC 4 cut(s) 177, 751, 1567, 1610
TseI GCWGC 2 cut(s) 19, 1551
Tsp45I GTSAC 4 cut(s) 177, 751, 1567, 1610
TspDTI ATGAA 9 cut(s) 17, 465, 626, 788, 1019, 1111, 1139, 1143, 1595
TspGWI ACGGA 4 cut(s) 55, 1221, 1266, 1613
TspRI CASTG 5 cut(s) 448, 1318, 1339, 1510, 1576
Van91I CCANNNNNTGG 1 cut(s) 417
VpaK11BI GGWCC 3 cut(s) 420, 458, 1058
XapI RAATTY 3 cut(s) 212, 297, 919
XbaI TCTAGA 1 cut(s) 100
XceI RCATGY 1 cut(s) 389
XspI CTAG 2 cut(s) 101, 1167
ZraI GACGTC 1 cut(s) 1513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.