ubiquitin-dependent protein catabolic process
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G33830 AT4G33840 AT4G33860 |
| fragaria_vesca | FvH4_2g03792 FvH4_2g03793 FvH4_2g03793 FvH4_2g03840 FvH4_3g40060 |
| malus_domestica | MD05G1100700.v1.1 MD10G1105900.v1.1 MD10G1106500.v1.1 |
| prunus_persica | Prupe.8G145100_v2.0.a1 Prupe.8G145200_v2.0.a1 Prupe.8G145300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0072231 RchiOBHm_Chr6g0252841 RchiOBHm_Chr6g0252851 |
| rosa_laevigata | RLG00000015059 RLG00000015061 |
| rosa_multiflora | Rmu_co8129022.1_g000001 Rmu_sc0000714.1_g000002 Rmu_sc0000829.1_g000017 Rmu_sc0000829.1_g000029 Rmu_sc0028322.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00212390 |
| rosa_rugosa | Rorug05G0417000 Rorug05G0539100 |
| rosa_samantha | Rh5DG505200 Rh6AG055100 Rh6BG049200 Rh6CG047900 Rh6CG048000 Rh6CG048100 Rh6DG043400 Rh6DG043600 Rh6DG043700 |
| rosa_wichuraiana | Rw5G043950 Rw6G004970 Rw6G004990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 101, 1044 |
| AciI | CCGC | 4 cut(s) | 215, 297, 365, 1188 |
| AclWI | GGATC | 1 cut(s) | 1301 |
| AcsI | RAATTY | 5 cut(s) | 185, 207, 928, 985, 997 |
| AcuI | CTGAAG | 5 cut(s) | 399, 782, 1014, 1511, 1581 |
| AfaI | GTAC | 2 cut(s) | 863, 1142 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 83 |
| AgeI | ACCGGT | 1 cut(s) | 1466 |
| AjiI | CACGTC | 1 cut(s) | 767 |
| AjnI | CCWGG | 1 cut(s) | 759 |
| Alw21I | GWGCWC | 3 cut(s) | 432, 846, 1514 |
| Alw26I | GTCTC | 5 cut(s) | 234, 519, 1218, 1558, 1656 |
| AlwI | GGATC | 1 cut(s) | 1301 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 335, 785 |
| Ama87I | CYCGRG | 1 cut(s) | 107 |
| AoxI | GGCC | 1 cut(s) | 832 |
| ApeKI | GCWGC | 4 cut(s) | 314, 1124, 1274, 1345 |
| ApoI | RAATTY | 5 cut(s) | 185, 207, 928, 985, 997 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 365, 397 |
| AsiGI | ACCGGT | 1 cut(s) | 1466 |
| AspS9I | GGNCC | 2 cut(s) | 381, 1409 |
| AsuC2I | CCSGG | 1 cut(s) | 1176 |
| AsuHPI | GGTGA | 4 cut(s) | 365, 487, 1361, 1481 |
| AvaI | CYCGRG | 1 cut(s) | 107 |
| AvaII | GGWCC | 2 cut(s) | 381, 1409 |
| BaeGI | GKGCMC | 1 cut(s) | 1287 |
| BanII | GRGCYC | 2 cut(s) | 432, 1514 |
| BauI | CACGAG | 1 cut(s) | 191 |
| Bbv12I | GWGCWC | 3 cut(s) | 432, 846, 1514 |
| BbvI | GCAGC | 4 cut(s) | 326, 1136, 1261, 1357 |
| BccI | CCATC | 4 cut(s) | 113, 126, 1009, 1058 |
| BciT130I | CCWGG | 1 cut(s) | 761 |
| BciVI | GTATCC | 1 cut(s) | 273 |
| BclI | TGATCA | 1 cut(s) | 1324 |
| BcnI | CCSGG | 1 cut(s) | 1176 |
| BcoDI | GTCTC | 5 cut(s) | 234, 519, 1218, 1558, 1656 |
| BfaI | CTAG | 1 cut(s) | 1647 |
| BfmI | CTRYAG | 1 cut(s) | 158 |
| BfuI | GTATCC | 1 cut(s) | 273 |
| BisI | GCNGC | 4 cut(s) | 315, 1125, 1275, 1346 |
| BlpI | GCTNAGC | 1 cut(s) | 1513 |
| BlsI | GCNGC | 4 cut(s) | 316, 1126, 1276, 1347 |
| Bme1390I | CCNGG | 2 cut(s) | 761, 1176 |
| Bme18I | GGWCC | 2 cut(s) | 381, 1409 |
| BmeT110I | CYCGRG | 1 cut(s) | 107 |
| BmgBI | CACGTC | 1 cut(s) | 767 |
| BmgT120I | GGNCC | 2 cut(s) | 381, 1409 |
| BmiI | GGNNCC | 2 cut(s) | 627, 1410 |
| BmrFI | CCNGG | 2 cut(s) | 761, 1176 |
| BmrI | ACTGGG | 2 cut(s) | 853, 1057 |
| BmsI | GCATC | 5 cut(s) | 412, 486, 565, 778, 1646 |
| BmuI | ACTGGG | 2 cut(s) | 853, 1057 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 761, 793 |
| BpmI | CTGGAG | 1 cut(s) | 1116 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1513 |
| BpuEI | CTTGAG | 2 cut(s) | 374, 1229 |
| BpuMI | CCSGG | 1 cut(s) | 1176 |
| BsaI | GGTCTC | 2 cut(s) | 1558, 1656 |
| BsaJI | CCNNGG | 4 cut(s) | 552, 760, 1564, 1614 |
| BsaWI | WCCGGW | 1 cut(s) | 1466 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 83 |
| Bse118I | RCCGGY | 1 cut(s) | 1466 |
| Bse1I | ACTGG | 2 cut(s) | 859, 1052 |
| Bse3DI | GCAATG | 6 cut(s) | 59, 482, 512, 531, 819, 960 |
| BseBI | CCWGG | 1 cut(s) | 761 |
| BseDI | CCNNGG | 4 cut(s) | 552, 760, 1564, 1614 |
| BseGI | GGATG | 6 cut(s) | 137, 663, 856, 976, 1020, 1424 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 83 |
| BseMI | GCAATG | 6 cut(s) | 59, 482, 512, 531, 819, 960 |
| BseMII | CTCAG | 6 cut(s) | 62, 83, 792, 1168, 1388, 1527 |
| BseNI | ACTGG | 2 cut(s) | 859, 1052 |
| BseSI | GKGCMC | 1 cut(s) | 1287 |
| BseXI | GCAGC | 4 cut(s) | 326, 1136, 1261, 1357 |
| BshFI | GGCC | 1 cut(s) | 834 |
| BshTI | ACCGGT | 1 cut(s) | 1466 |
| BsiHKAI | GWGCWC | 3 cut(s) | 432, 846, 1514 |
| BsiHKCI | CYCGRG | 1 cut(s) | 107 |
| BsiSI | CCGG | 2 cut(s) | 1175, 1467 |
| BslFI | GGGAC | 2 cut(s) | 777, 1422 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 83 |
| BsmAI | GTCTC | 5 cut(s) | 234, 519, 1218, 1558, 1656 |
| BsmFI | GGGAC | 2 cut(s) | 777, 1422 |
| BsmI | GAATGC | 1 cut(s) | 1363 |
| BsnI | GGCC | 1 cut(s) | 834 |
| Bso31I | GGTCTC | 2 cut(s) | 1558, 1656 |
| BsoBI | CYCGRG | 1 cut(s) | 107 |
| Bsp1286I | GDGCHC | 4 cut(s) | 432, 846, 1287, 1514 |
| Bsp143I | GATC | 5 cut(s) | 523, 1293, 1315, 1324, 1584 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1513 |
| Bsp19I | CCATGG | 1 cut(s) | 1564 |
| BspACI | CCGC | 4 cut(s) | 215, 297, 365, 1188 |
| BspANI | GGCC | 1 cut(s) | 834 |
| BspCNI | CTCAG | 6 cut(s) | 61, 82, 791, 1167, 1387, 1526 |
| BspLI | GGNNCC | 2 cut(s) | 627, 1410 |
| BspPI | GGATC | 1 cut(s) | 1301 |
| BspTNI | GGTCTC | 2 cut(s) | 1558, 1656 |
| BsrDI | GCAATG | 6 cut(s) | 59, 482, 512, 531, 819, 960 |
| BsrFI | RCCGGY | 1 cut(s) | 1466 |
| BsrI | ACTGG | 2 cut(s) | 859, 1052 |
| BssAI | RCCGGY | 1 cut(s) | 1466 |
| BssECI | CCNNGG | 4 cut(s) | 552, 760, 1564, 1614 |
| BssMI | GATC | 5 cut(s) | 523, 1293, 1315, 1324, 1584 |
| BssSI | CACGAG | 1 cut(s) | 191 |
| BssT1I | CCWWGG | 3 cut(s) | 552, 1564, 1614 |
| Bst2BI | CACGAG | 1 cut(s) | 191 |
| Bst2UI | CCWGG | 1 cut(s) | 761 |
| Bst4CI | ACNGT | 2 cut(s) | 406, 492 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 575 |
| BstDEI | CTNAG | 8 cut(s) | 48, 69, 778, 1137, 1154, 1352, 1374, 1513 |
| BstDSI | CCRYGG | 1 cut(s) | 1564 |
| BstF5I | GGATG | 6 cut(s) | 137, 663, 856, 976, 1020, 1424 |
| BstKTI | GATC | 5 cut(s) | 526, 1296, 1318, 1327, 1587 |
| BstMAI | GTCTC | 5 cut(s) | 234, 519, 1218, 1558, 1656 |
| BstMBI | GATC | 5 cut(s) | 523, 1293, 1315, 1324, 1584 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 575, 1058, 1067, 1133 |
| BstNI | CCWGG | 1 cut(s) | 761 |
| BstNSI | RCATGY | 1 cut(s) | 229 |
| BstSCI | CCNGG | 2 cut(s) | 759, 1174 |
| BstSFI | CTRYAG | 1 cut(s) | 158 |
| BstSLI | GKGCMC | 1 cut(s) | 1287 |
| BstV1I | GCAGC | 4 cut(s) | 326, 1136, 1261, 1357 |
| BsuI | GTATCC | 1 cut(s) | 273 |
| BsuRI | GGCC | 1 cut(s) | 834 |
| BtgI | CCRYGG | 1 cut(s) | 1564 |
| BtgZI | GCGATG | 1 cut(s) | 435 |
| BtrI | CACGTC | 1 cut(s) | 767 |
| BtsCI | GGATG | 6 cut(s) | 137, 663, 856, 976, 1020, 1424 |
| BtsIMutI | CAGTG | 1 cut(s) | 786 |
| CaiI | CAGNNNCTG | 2 cut(s) | 335, 785 |
| Cfr10I | RCCGGY | 1 cut(s) | 1466 |
| Cfr13I | GGNCC | 2 cut(s) | 381, 1409 |
| Csp6I | GTAC | 2 cut(s) | 862, 1141 |
| CspAI | ACCGGT | 1 cut(s) | 1466 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 67, 102 |
| CviAII | CATG | 5 cut(s) | 218, 226, 385, 793, 1565 |
| CviQI | GTAC | 2 cut(s) | 862, 1141 |
| DdeI | CTNAG | 8 cut(s) | 48, 69, 778, 1137, 1154, 1352, 1374, 1513 |
| DpnI | GATC | 5 cut(s) | 525, 1295, 1317, 1326, 1586 |
| DpnII | GATC | 5 cut(s) | 523, 1293, 1315, 1324, 1584 |
| DraI | TTTAAA | 1 cut(s) | 345 |
| EciI | GGCGGA | 1 cut(s) | 1203 |
| Ecl136II | GAGCTC | 2 cut(s) | 430, 1512 |
| Eco130I | CCWWGG | 3 cut(s) | 552, 1564, 1614 |
| Eco24I | GRGCYC | 2 cut(s) | 432, 1514 |
| Eco31I | GGTCTC | 2 cut(s) | 1558, 1656 |
| Eco47I | GGWCC | 2 cut(s) | 381, 1409 |
| Eco53kI | GAGCTC | 2 cut(s) | 430, 1512 |
| Eco57I | CTGAAG | 5 cut(s) | 399, 782, 1014, 1511, 1581 |
| Eco88I | CYCGRG | 1 cut(s) | 107 |
| EcoICRI | GAGCTC | 2 cut(s) | 430, 1512 |
| EcoRI | GAATTC | 1 cut(s) | 207 |
| EcoRII | CCWGG | 1 cut(s) | 759 |
| EcoT14I | CCWWGG | 3 cut(s) | 552, 1564, 1614 |
| EcoT38I | GRGCYC | 2 cut(s) | 432, 1514 |
| ErhI | CCWWGG | 3 cut(s) | 552, 1564, 1614 |
| FaeI | CATG | 5 cut(s) | 221, 229, 388, 796, 1568 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 227, 259, 622, 654 |
| FaqI | GGGAC | 2 cut(s) | 777, 1422 |
| FatI | CATG | 5 cut(s) | 217, 225, 384, 792, 1564 |
| FbaI | TGATCA | 1 cut(s) | 1324 |
| Fnu4HI | GCNGC | 4 cut(s) | 315, 1125, 1275, 1346 |
| FokI | GGATG | 6 cut(s) | 144, 650, 863, 983, 1027, 1431 |
| FriOI | GRGCYC | 2 cut(s) | 432, 1514 |
| Fsp4HI | GCNGC | 4 cut(s) | 315, 1125, 1275, 1346 |
| FspBI | CTAG | 1 cut(s) | 1647 |
| GluI | GCNGC | 4 cut(s) | 315, 1125, 1275, 1346 |
| GsuI | CTGGAG | 1 cut(s) | 1116 |
| HaeIII | GGCC | 1 cut(s) | 834 |
| HapII | CCGG | 2 cut(s) | 1175, 1467 |
| Hin1II | CATG | 5 cut(s) | 221, 229, 388, 796, 1568 |
| HincII | GTYRAC | 2 cut(s) | 472, 979 |
| HindII | GTYRAC | 2 cut(s) | 472, 979 |
| HindIII | AAGCTT | 1 cut(s) | 1168 |
| HinfI | GANTC | 9 cut(s) | 170, 368, 561, 854, 1211, 1378, 1386, 1532, 1607 |
| HpaII | CCGG | 2 cut(s) | 1175, 1467 |
| HphI | GGTGA | 4 cut(s) | 365, 487, 1361, 1481 |
| Hpy166II | GTNNAC | 7 cut(s) | 241, 472, 495, 696, 979, 1480, 1621 |
| Hpy188I | TCNGA | 4 cut(s) | 72, 710, 1157, 1377 |
| Hpy188III | TCNNGA | 7 cut(s) | 325, 336, 439, 521, 1084, 1259, 1322 |
| Hpy8I | GTNNAC | 7 cut(s) | 241, 472, 495, 696, 979, 1480, 1621 |
| HpyAV | CCTTC | 3 cut(s) | 1154, 1486, 1568 |
| HpyCH4III | ACNGT | 2 cut(s) | 406, 492 |
| HpyCH4IV | ACGT | 4 cut(s) | 766, 1308, 1473, 1632 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 575, 1058, 1067, 1133 |
| HpyF3I | CTNAG | 8 cut(s) | 48, 69, 778, 1137, 1154, 1352, 1374, 1513 |
| HpySE526I | ACGT | 4 cut(s) | 766, 1308, 1473, 1632 |
| Hsp92II | CATG | 5 cut(s) | 221, 229, 388, 796, 1568 |
| Ksp22I | TGATCA | 1 cut(s) | 1324 |
| Kzo9I | GATC | 5 cut(s) | 523, 1293, 1315, 1324, 1584 |
| LmnI | GCTCC | 4 cut(s) | 631, 1067, 1342, 1509 |
| Lsp1109I | GCAGC | 4 cut(s) | 326, 1136, 1261, 1357 |
| LweI | GCATC | 5 cut(s) | 412, 486, 565, 778, 1646 |
| MaeI | CTAG | 1 cut(s) | 1647 |
| MaeII | ACGT | 4 cut(s) | 766, 1308, 1473, 1632 |
| MaeIII | GTNAC | 6 cut(s) | 179, 251, 712, 1421, 1469, 1485 |
| MalI | GATC | 5 cut(s) | 525, 1295, 1317, 1326, 1586 |
| MboI | GATC | 5 cut(s) | 523, 1293, 1315, 1324, 1584 |
| MboII | GAAGA | 2 cut(s) | 1587, 1594 |
| MhlI | GDGCHC | 4 cut(s) | 432, 846, 1287, 1514 |
| MluCI | AATT | 9 cut(s) | 185, 207, 373, 928, 985, 997, 1035, 1301, 1625 |
| MlyI | GAGTC | 2 cut(s) | 1220, 1526 |
| MseI | TTAA | 7 cut(s) | 113, 125, 344, 1056, 1095, 1452, 1669 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1417 |
| MspI | CCGG | 2 cut(s) | 1175, 1467 |
| MspR9I | CCNGG | 2 cut(s) | 761, 1176 |
| Mva1269I | GAATGC | 1 cut(s) | 1363 |
| MvaI | CCWGG | 1 cut(s) | 761 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 575, 1058, 1067, 1133 |
| NciI | CCSGG | 1 cut(s) | 1176 |
| NcoI | CCATGG | 1 cut(s) | 1564 |
| NdeII | GATC | 5 cut(s) | 523, 1293, 1315, 1324, 1584 |
| NlaIII | CATG | 5 cut(s) | 221, 229, 388, 796, 1568 |
| NlaIV | GGNNCC | 2 cut(s) | 627, 1410 |
| NmeAIII | GCCGAG | 1 cut(s) | 451 |
| NmuCI | GTSAC | 2 cut(s) | 251, 1469 |
| NspI | RCATGY | 1 cut(s) | 229 |
| PctI | GAATGC | 1 cut(s) | 1363 |
| PfeI | GAWTC | 7 cut(s) | 170, 368, 561, 854, 1378, 1386, 1607 |
| PinAI | ACCGGT | 1 cut(s) | 1466 |
| PkrI | GCNGC | 4 cut(s) | 316, 1126, 1276, 1347 |
| PleI | GAGTC | 2 cut(s) | 1219, 1526 |
| PpsI | GAGTC | 2 cut(s) | 1219, 1526 |
| PsiI | TTATAA | 2 cut(s) | 101, 1044 |
| Psp124BI | GAGCTC | 2 cut(s) | 432, 1514 |
| Psp6I | CCWGG | 1 cut(s) | 759 |
| PspGI | CCWGG | 1 cut(s) | 759 |
| PspN4I | GGNNCC | 2 cut(s) | 627, 1410 |
| PspPI | GGNCC | 2 cut(s) | 381, 1409 |
| PstNI | CAGNNNCTG | 2 cut(s) | 335, 785 |
| RsaI | GTAC | 2 cut(s) | 863, 1142 |
| RsaNI | GTAC | 2 cut(s) | 862, 1141 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1417 |
| SacI | GAGCTC | 2 cut(s) | 432, 1514 |
| SaqAI | TTAA | 7 cut(s) | 113, 125, 344, 1056, 1095, 1452, 1669 |
| SatI | GCNGC | 4 cut(s) | 315, 1125, 1275, 1346 |
| Sau3AI | GATC | 5 cut(s) | 523, 1293, 1315, 1324, 1584 |
| Sau96I | GGNCC | 2 cut(s) | 381, 1409 |
| SchI | GAGTC | 2 cut(s) | 1220, 1526 |
| ScrFI | CCNGG | 2 cut(s) | 761, 1176 |
| SduI | GDGCHC | 4 cut(s) | 432, 846, 1287, 1514 |
| SfaNI | GCATC | 5 cut(s) | 412, 486, 565, 778, 1646 |
| SfcI | CTRYAG | 1 cut(s) | 158 |
| SinI | GGWCC | 2 cut(s) | 381, 1409 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1417 |
| SmlI | CTYRAG | 2 cut(s) | 389, 1208 |
| SmoI | CTYRAG | 2 cut(s) | 389, 1208 |
| Sse9I | AATT | 9 cut(s) | 185, 207, 373, 928, 985, 997, 1035, 1301, 1625 |
| SsiI | CCGC | 4 cut(s) | 215, 297, 365, 1188 |
| SspI | AATATT | 1 cut(s) | 1225 |
| SspMI | CTAG | 1 cut(s) | 1647 |
| SstI | GAGCTC | 2 cut(s) | 432, 1514 |
| StyD4I | CCNGG | 2 cut(s) | 759, 1174 |
| StyI | CCWWGG | 3 cut(s) | 552, 1564, 1614 |
| TaaI | ACNGT | 2 cut(s) | 406, 492 |
| TaiI | ACGT | 4 cut(s) | 769, 1311, 1476, 1635 |
| TaqI | TCGA | 3 cut(s) | 26, 205, 438 |
| TasI | AATT | 9 cut(s) | 185, 207, 373, 928, 985, 997, 1035, 1301, 1625 |
| TfiI | GAWTC | 7 cut(s) | 170, 368, 561, 854, 1378, 1386, 1607 |
| Tru1I | TTAA | 7 cut(s) | 113, 125, 344, 1056, 1095, 1452, 1669 |
| Tru9I | TTAA | 7 cut(s) | 113, 125, 344, 1056, 1095, 1452, 1669 |
| TscAI | CASTG | 1 cut(s) | 786 |
| TseFI | GTSAC | 2 cut(s) | 251, 1469 |
| TseI | GCWGC | 4 cut(s) | 314, 1124, 1274, 1345 |
| Tsp45I | GTSAC | 2 cut(s) | 251, 1469 |
| TspDTI | ATGAA | 3 cut(s) | 749, 1134, 1458 |
| TspRI | CASTG | 1 cut(s) | 786 |
| VpaK11BI | GGWCC | 2 cut(s) | 381, 1409 |
| XapI | RAATTY | 5 cut(s) | 185, 207, 928, 985, 997 |
| XceI | RCATGY | 1 cut(s) | 229 |
| XspI | CTAG | 1 cut(s) | 1647 |