RchiOBHm_Chr6g0252851

ubiquitin-dependent protein catabolic process

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
7990275 .. 7993041
2767 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22671

Sequence Viewer

Length: 1671 bp
ATGAGTATTTTGCAGGGTTTGAAGTCGAAGCCTTACCCTATGATTACTCAGCAATGTTTAGCAAATCCTCAGAAACCCAAGTATGGTGGAGGTATCATTATAAACCCCGAGTTAAATGATGGGTTAAAAGGATGGACTTCTTTTGGCAAAGCAAAACTACAGCACACAGAATCACAGGGTAACAAATTCCTCGTGGCTCATAGTCGAATTCAACCGCATGATAGCATGTCTCAAAAGGTTTACTTACGAAGTGACAAGCTCTACACATTTTCTGCTTGGATACAAGCAAGTAGTGGCGGTAGCGTTCCAATAGCAGCTATTTTCAAGACAGCTTCTGGATTTTTAAATGCTGGTGAGATTATTGCGGAATCAAATTGTTGGTCCATGCTCAAGGGTGGTCTAACTGTCAAGGCTTCAGGCGATGCCGAGCTCTATTTCGAGAGCAAGAATACTTCTGTTGAGATTTGGGTTGACAGCATCTCATTGCAACCGTTCACCAAAAAGCAATGGAAGTCTCATCAAGATCAAAGCATTGCCAATAATCGTAAAACCAAGGTGCGAATCCAAGCAGTTGATGCACAAGGAAATCCTCTACCAAATGCTACAATCTCCATTCAACAAAAGGCTCCAAGTTTCCCTTTTGGTTGTTGTATGACCAATCTCATCCTCAACAACCCTGCCCACCAAAAGTGGTTCACTTCAAGGTTCAGAGTAACAACATTTGCTAACGAAATGAAATGGTATAGCACAGAGAATGTCCAGGGACGTGAGGACTACTCAGTGCCTGATGCCATGCTTCAGTTTGCACAACAAAACAACATTGCAGTTAGAGGCCATAATGTGCTCTGGGATGATTCCCAGTACCAACTCGGTTGGGTCAAATCACTCAATGAGCAACAACTTGAAAGTGCAACTAACAAGAGGCTAAATTCTGTTATGCAGAGATACAAGGGCAAGGTCATTGCTTGGGATGTTGTCAACGAAAATTTACATTGGAATTTCTTTGAAAGTAGGATGGGTGCAAATGCTTCAGCAATTTTTTATAACTGGGCTATTAAAGCTGATGGAGCAACCCCCTTGTTCTTGAATGACTTTAATACCATTGAGGATAACAGAGATGAAGCAGCCTCTCCAGCTAAGTACCTTCAAAAGCTCAGAGATATACAAAGCTTTCCGGGTAATGAGGGCGGACGATATGGGATTGGGCTTGAGTCTCATTTCAATATTACTCCTAACATTCCTTACATACGAGCTTCTCTTGATACTCTTGGGGCTGCAAATGTGCCCATTTGGATCACAGAATTGGACGTAGCAGATCATCTTGATCAGCCAAGTATATTGGAGCAGCTTCTTAGAGAGTTGCATTCTCACCCTCAGATTCAAGGAATCATTATGTGGGCTGGACGGGGACCACAAGGATGTTACAGAATGTGTTTGACAGATGAAAACTTTAACAACTTGCCAACCGGTGACGTTGTGGACAAGTTACTGAAGGAATGGGGTTATTGGAGCTCAGCTTCTTTCACAGCAGACTCCAATGGTTATTTTGAGGTCTCCCTTCCCCATGGAGATTATGACTTGAAGATCAGCCATTCTTCAGCCATAGATTCCTCCTTGGTTCACAAATTGAACGTGGCATCAACAACTAGGTCTCTGCAACTTTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

556

Amino Acids

62.29

Weight (kDa)

7.23

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBM_4_9 PF02018 32 - 150 2.3e-06 Carbohydrate binding domain
Glyco_hydro_10 PF00331 211 - 467 1.6e-41 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 101, 1044
AciI CCGC 4 cut(s) 215, 297, 365, 1188
AclWI GGATC 1 cut(s) 1301
AcsI RAATTY 5 cut(s) 185, 207, 928, 985, 997
AcuI CTGAAG 5 cut(s) 399, 782, 1014, 1511, 1581
AfaI GTAC 2 cut(s) 863, 1142
AfiI CCNNNNNNNGG 1 cut(s) 83
AgeI ACCGGT 1 cut(s) 1466
AjiI CACGTC 1 cut(s) 767
AjnI CCWGG 1 cut(s) 759
Alw21I GWGCWC 3 cut(s) 432, 846, 1514
Alw26I GTCTC 5 cut(s) 234, 519, 1218, 1558, 1656
AlwI GGATC 1 cut(s) 1301
AlwNI CAGNNNCTG 2 cut(s) 335, 785
Ama87I CYCGRG 1 cut(s) 107
AoxI GGCC 1 cut(s) 832
ApeKI GCWGC 4 cut(s) 314, 1124, 1274, 1345
ApoI RAATTY 5 cut(s) 185, 207, 928, 985, 997
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AsiGI ACCGGT 1 cut(s) 1466
AspS9I GGNCC 2 cut(s) 381, 1409
AsuC2I CCSGG 1 cut(s) 1176
AsuHPI GGTGA 4 cut(s) 365, 487, 1361, 1481
AvaI CYCGRG 1 cut(s) 107
AvaII GGWCC 2 cut(s) 381, 1409
BaeGI GKGCMC 1 cut(s) 1287
BanII GRGCYC 2 cut(s) 432, 1514
BauI CACGAG 1 cut(s) 191
Bbv12I GWGCWC 3 cut(s) 432, 846, 1514
BbvI GCAGC 4 cut(s) 326, 1136, 1261, 1357
BccI CCATC 4 cut(s) 113, 126, 1009, 1058
BciT130I CCWGG 1 cut(s) 761
BciVI GTATCC 1 cut(s) 273
BclI TGATCA 1 cut(s) 1324
BcnI CCSGG 1 cut(s) 1176
BcoDI GTCTC 5 cut(s) 234, 519, 1218, 1558, 1656
BfaI CTAG 1 cut(s) 1647
BfmI CTRYAG 1 cut(s) 158
BfuI GTATCC 1 cut(s) 273
BisI GCNGC 4 cut(s) 315, 1125, 1275, 1346
BlpI GCTNAGC 1 cut(s) 1513
BlsI GCNGC 4 cut(s) 316, 1126, 1276, 1347
Bme1390I CCNGG 2 cut(s) 761, 1176
Bme18I GGWCC 2 cut(s) 381, 1409
BmeT110I CYCGRG 1 cut(s) 107
BmgBI CACGTC 1 cut(s) 767
BmgT120I GGNCC 2 cut(s) 381, 1409
BmiI GGNNCC 2 cut(s) 627, 1410
BmrFI CCNGG 2 cut(s) 761, 1176
BmrI ACTGGG 2 cut(s) 853, 1057
BmsI GCATC 5 cut(s) 412, 486, 565, 778, 1646
BmuI ACTGGG 2 cut(s) 853, 1057
BplI GAGNNNNNCTC 2 cut(s) 761, 793
BpmI CTGGAG 1 cut(s) 1116
Bpu1102I GCTNAGC 1 cut(s) 1513
BpuEI CTTGAG 2 cut(s) 374, 1229
BpuMI CCSGG 1 cut(s) 1176
BsaI GGTCTC 2 cut(s) 1558, 1656
BsaJI CCNNGG 4 cut(s) 552, 760, 1564, 1614
BsaWI WCCGGW 1 cut(s) 1466
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse118I RCCGGY 1 cut(s) 1466
Bse1I ACTGG 2 cut(s) 859, 1052
Bse3DI GCAATG 6 cut(s) 59, 482, 512, 531, 819, 960
BseBI CCWGG 1 cut(s) 761
BseDI CCNNGG 4 cut(s) 552, 760, 1564, 1614
BseGI GGATG 6 cut(s) 137, 663, 856, 976, 1020, 1424
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 6 cut(s) 59, 482, 512, 531, 819, 960
BseMII CTCAG 6 cut(s) 62, 83, 792, 1168, 1388, 1527
BseNI ACTGG 2 cut(s) 859, 1052
BseSI GKGCMC 1 cut(s) 1287
BseXI GCAGC 4 cut(s) 326, 1136, 1261, 1357
BshFI GGCC 1 cut(s) 834
BshTI ACCGGT 1 cut(s) 1466
BsiHKAI GWGCWC 3 cut(s) 432, 846, 1514
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 2 cut(s) 1175, 1467
BslFI GGGAC 2 cut(s) 777, 1422
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 5 cut(s) 234, 519, 1218, 1558, 1656
BsmFI GGGAC 2 cut(s) 777, 1422
BsmI GAATGC 1 cut(s) 1363
BsnI GGCC 1 cut(s) 834
Bso31I GGTCTC 2 cut(s) 1558, 1656
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 4 cut(s) 432, 846, 1287, 1514
Bsp143I GATC 5 cut(s) 523, 1293, 1315, 1324, 1584
Bsp1720I GCTNAGC 1 cut(s) 1513
Bsp19I CCATGG 1 cut(s) 1564
BspACI CCGC 4 cut(s) 215, 297, 365, 1188
BspANI GGCC 1 cut(s) 834
BspCNI CTCAG 6 cut(s) 61, 82, 791, 1167, 1387, 1526
BspLI GGNNCC 2 cut(s) 627, 1410
BspPI GGATC 1 cut(s) 1301
BspTNI GGTCTC 2 cut(s) 1558, 1656
BsrDI GCAATG 6 cut(s) 59, 482, 512, 531, 819, 960
BsrFI RCCGGY 1 cut(s) 1466
BsrI ACTGG 2 cut(s) 859, 1052
BssAI RCCGGY 1 cut(s) 1466
BssECI CCNNGG 4 cut(s) 552, 760, 1564, 1614
BssMI GATC 5 cut(s) 523, 1293, 1315, 1324, 1584
BssSI CACGAG 1 cut(s) 191
BssT1I CCWWGG 3 cut(s) 552, 1564, 1614
Bst2BI CACGAG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 761
Bst4CI ACNGT 2 cut(s) 406, 492
BstAPI GCANNNNNTGC 1 cut(s) 575
BstDEI CTNAG 8 cut(s) 48, 69, 778, 1137, 1154, 1352, 1374, 1513
BstDSI CCRYGG 1 cut(s) 1564
BstF5I GGATG 6 cut(s) 137, 663, 856, 976, 1020, 1424
BstKTI GATC 5 cut(s) 526, 1296, 1318, 1327, 1587
BstMAI GTCTC 5 cut(s) 234, 519, 1218, 1558, 1656
BstMBI GATC 5 cut(s) 523, 1293, 1315, 1324, 1584
BstMWI GCNNNNNNNGC 4 cut(s) 575, 1058, 1067, 1133
BstNI CCWGG 1 cut(s) 761
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 759, 1174
BstSFI CTRYAG 1 cut(s) 158
BstSLI GKGCMC 1 cut(s) 1287
BstV1I GCAGC 4 cut(s) 326, 1136, 1261, 1357
BsuI GTATCC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 834
BtgI CCRYGG 1 cut(s) 1564
BtgZI GCGATG 1 cut(s) 435
BtrI CACGTC 1 cut(s) 767
BtsCI GGATG 6 cut(s) 137, 663, 856, 976, 1020, 1424
BtsIMutI CAGTG 1 cut(s) 786
CaiI CAGNNNCTG 2 cut(s) 335, 785
Cfr10I RCCGGY 1 cut(s) 1466
Cfr13I GGNCC 2 cut(s) 381, 1409
Csp6I GTAC 2 cut(s) 862, 1141
CspAI ACCGGT 1 cut(s) 1466
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 5 cut(s) 218, 226, 385, 793, 1565
CviQI GTAC 2 cut(s) 862, 1141
DdeI CTNAG 8 cut(s) 48, 69, 778, 1137, 1154, 1352, 1374, 1513
DpnI GATC 5 cut(s) 525, 1295, 1317, 1326, 1586
DpnII GATC 5 cut(s) 523, 1293, 1315, 1324, 1584
DraI TTTAAA 1 cut(s) 345
EciI GGCGGA 1 cut(s) 1203
Ecl136II GAGCTC 2 cut(s) 430, 1512
Eco130I CCWWGG 3 cut(s) 552, 1564, 1614
Eco24I GRGCYC 2 cut(s) 432, 1514
Eco31I GGTCTC 2 cut(s) 1558, 1656
Eco47I GGWCC 2 cut(s) 381, 1409
Eco53kI GAGCTC 2 cut(s) 430, 1512
Eco57I CTGAAG 5 cut(s) 399, 782, 1014, 1511, 1581
Eco88I CYCGRG 1 cut(s) 107
EcoICRI GAGCTC 2 cut(s) 430, 1512
EcoRI GAATTC 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 759
EcoT14I CCWWGG 3 cut(s) 552, 1564, 1614
EcoT38I GRGCYC 2 cut(s) 432, 1514
ErhI CCWWGG 3 cut(s) 552, 1564, 1614
FaeI CATG 5 cut(s) 221, 229, 388, 796, 1568
FalI AAGNNNNNCTT 4 cut(s) 227, 259, 622, 654
FaqI GGGAC 2 cut(s) 777, 1422
FatI CATG 5 cut(s) 217, 225, 384, 792, 1564
FbaI TGATCA 1 cut(s) 1324
Fnu4HI GCNGC 4 cut(s) 315, 1125, 1275, 1346
FokI GGATG 6 cut(s) 144, 650, 863, 983, 1027, 1431
FriOI GRGCYC 2 cut(s) 432, 1514
Fsp4HI GCNGC 4 cut(s) 315, 1125, 1275, 1346
FspBI CTAG 1 cut(s) 1647
GluI GCNGC 4 cut(s) 315, 1125, 1275, 1346
GsuI CTGGAG 1 cut(s) 1116
HaeIII GGCC 1 cut(s) 834
HapII CCGG 2 cut(s) 1175, 1467
Hin1II CATG 5 cut(s) 221, 229, 388, 796, 1568
HincII GTYRAC 2 cut(s) 472, 979
HindII GTYRAC 2 cut(s) 472, 979
HindIII AAGCTT 1 cut(s) 1168
HinfI GANTC 9 cut(s) 170, 368, 561, 854, 1211, 1378, 1386, 1532, 1607
HpaII CCGG 2 cut(s) 1175, 1467
HphI GGTGA 4 cut(s) 365, 487, 1361, 1481
Hpy166II GTNNAC 7 cut(s) 241, 472, 495, 696, 979, 1480, 1621
Hpy188I TCNGA 4 cut(s) 72, 710, 1157, 1377
Hpy188III TCNNGA 7 cut(s) 325, 336, 439, 521, 1084, 1259, 1322
Hpy8I GTNNAC 7 cut(s) 241, 472, 495, 696, 979, 1480, 1621
HpyAV CCTTC 3 cut(s) 1154, 1486, 1568
HpyCH4III ACNGT 2 cut(s) 406, 492
HpyCH4IV ACGT 4 cut(s) 766, 1308, 1473, 1632
HpyF10VI GCNNNNNNNGC 4 cut(s) 575, 1058, 1067, 1133
HpyF3I CTNAG 8 cut(s) 48, 69, 778, 1137, 1154, 1352, 1374, 1513
HpySE526I ACGT 4 cut(s) 766, 1308, 1473, 1632
Hsp92II CATG 5 cut(s) 221, 229, 388, 796, 1568
Ksp22I TGATCA 1 cut(s) 1324
Kzo9I GATC 5 cut(s) 523, 1293, 1315, 1324, 1584
LmnI GCTCC 4 cut(s) 631, 1067, 1342, 1509
Lsp1109I GCAGC 4 cut(s) 326, 1136, 1261, 1357
LweI GCATC 5 cut(s) 412, 486, 565, 778, 1646
MaeI CTAG 1 cut(s) 1647
MaeII ACGT 4 cut(s) 766, 1308, 1473, 1632
MaeIII GTNAC 6 cut(s) 179, 251, 712, 1421, 1469, 1485
MalI GATC 5 cut(s) 525, 1295, 1317, 1326, 1586
MboI GATC 5 cut(s) 523, 1293, 1315, 1324, 1584
MboII GAAGA 2 cut(s) 1587, 1594
MhlI GDGCHC 4 cut(s) 432, 846, 1287, 1514
MluCI AATT 9 cut(s) 185, 207, 373, 928, 985, 997, 1035, 1301, 1625
MlyI GAGTC 2 cut(s) 1220, 1526
MseI TTAA 7 cut(s) 113, 125, 344, 1056, 1095, 1452, 1669
MslI CAYNNNNRTG 1 cut(s) 1417
MspI CCGG 2 cut(s) 1175, 1467
MspR9I CCNGG 2 cut(s) 761, 1176
Mva1269I GAATGC 1 cut(s) 1363
MvaI CCWGG 1 cut(s) 761
MwoI GCNNNNNNNGC 4 cut(s) 575, 1058, 1067, 1133
NciI CCSGG 1 cut(s) 1176
NcoI CCATGG 1 cut(s) 1564
NdeII GATC 5 cut(s) 523, 1293, 1315, 1324, 1584
NlaIII CATG 5 cut(s) 221, 229, 388, 796, 1568
NlaIV GGNNCC 2 cut(s) 627, 1410
NmeAIII GCCGAG 1 cut(s) 451
NmuCI GTSAC 2 cut(s) 251, 1469
NspI RCATGY 1 cut(s) 229
PctI GAATGC 1 cut(s) 1363
PfeI GAWTC 7 cut(s) 170, 368, 561, 854, 1378, 1386, 1607
PinAI ACCGGT 1 cut(s) 1466
PkrI GCNGC 4 cut(s) 316, 1126, 1276, 1347
PleI GAGTC 2 cut(s) 1219, 1526
PpsI GAGTC 2 cut(s) 1219, 1526
PsiI TTATAA 2 cut(s) 101, 1044
Psp124BI GAGCTC 2 cut(s) 432, 1514
Psp6I CCWGG 1 cut(s) 759
PspGI CCWGG 1 cut(s) 759
PspN4I GGNNCC 2 cut(s) 627, 1410
PspPI GGNCC 2 cut(s) 381, 1409
PstNI CAGNNNCTG 2 cut(s) 335, 785
RsaI GTAC 2 cut(s) 863, 1142
RsaNI GTAC 2 cut(s) 862, 1141
RseI CAYNNNNRTG 1 cut(s) 1417
SacI GAGCTC 2 cut(s) 432, 1514
SaqAI TTAA 7 cut(s) 113, 125, 344, 1056, 1095, 1452, 1669
SatI GCNGC 4 cut(s) 315, 1125, 1275, 1346
Sau3AI GATC 5 cut(s) 523, 1293, 1315, 1324, 1584
Sau96I GGNCC 2 cut(s) 381, 1409
SchI GAGTC 2 cut(s) 1220, 1526
ScrFI CCNGG 2 cut(s) 761, 1176
SduI GDGCHC 4 cut(s) 432, 846, 1287, 1514
SfaNI GCATC 5 cut(s) 412, 486, 565, 778, 1646
SfcI CTRYAG 1 cut(s) 158
SinI GGWCC 2 cut(s) 381, 1409
SmiMI CAYNNNNRTG 1 cut(s) 1417
SmlI CTYRAG 2 cut(s) 389, 1208
SmoI CTYRAG 2 cut(s) 389, 1208
Sse9I AATT 9 cut(s) 185, 207, 373, 928, 985, 997, 1035, 1301, 1625
SsiI CCGC 4 cut(s) 215, 297, 365, 1188
SspI AATATT 1 cut(s) 1225
SspMI CTAG 1 cut(s) 1647
SstI GAGCTC 2 cut(s) 432, 1514
StyD4I CCNGG 2 cut(s) 759, 1174
StyI CCWWGG 3 cut(s) 552, 1564, 1614
TaaI ACNGT 2 cut(s) 406, 492
TaiI ACGT 4 cut(s) 769, 1311, 1476, 1635
TaqI TCGA 3 cut(s) 26, 205, 438
TasI AATT 9 cut(s) 185, 207, 373, 928, 985, 997, 1035, 1301, 1625
TfiI GAWTC 7 cut(s) 170, 368, 561, 854, 1378, 1386, 1607
Tru1I TTAA 7 cut(s) 113, 125, 344, 1056, 1095, 1452, 1669
Tru9I TTAA 7 cut(s) 113, 125, 344, 1056, 1095, 1452, 1669
TscAI CASTG 1 cut(s) 786
TseFI GTSAC 2 cut(s) 251, 1469
TseI GCWGC 4 cut(s) 314, 1124, 1274, 1345
Tsp45I GTSAC 2 cut(s) 251, 1469
TspDTI ATGAA 3 cut(s) 749, 1134, 1458
TspRI CASTG 1 cut(s) 786
VpaK11BI GGWCC 2 cut(s) 381, 1409
XapI RAATTY 5 cut(s) 185, 207, 928, 985, 997
XceI RCATGY 1 cut(s) 229
XspI CTAG 1 cut(s) 1647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.