Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028322.1

Orthogroup ID

OG0002751

Physical Location & Seq

Genomic Coordinates Reverse (-)

124 .. 1818

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028322.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atgacgaatgcaggcaaaagcaatctactgctgctgttatgcactagtcttttttcagggtttgaagtaattgcactatcctatgactacacagccagcattgagtgtttggaaaaccctcacaaaccccaatgtggtggaggaatcattgtaaaccctgaactaaatcacggcttgagagggtggtctacattcggcgatgcaaaactccaacatagagattcacaagcaggtaacaaatttgctgtgcctcgtaatagaaaccaaccacatgctgctattttcaagacaagtgctggatcattcattcatgctggtgctattgtcgcggaatccatgctcaagggtggcctaactgtgaatgcatcaagcccagctgagctttattttgagagtaagaacacatcggttgagatttgggttgatagcgtctcattacaaccattcaacaaaaaggaatggaagtctcattatgatcaaagcattgagaagaaccgaaagagcaacgctcccagcttccctttcggatgcgctatgaacaagaacattctcaccaatactgcttaccaaaactggttcacttcgaggtttggagtcacaacttttgaagacgaaatgaaatggtacagcacagaaccttcacagggacaagaggactactcagtggctgatgccctgcttcagtttgctaaacaacagaacattgcagtcagaggccacaatgtgttctgggatgatcctcagtaccatctagctgatggagcaaccaccttgttcatgaatgaccacaataccattgaggagagcaaagatggagactccaccccggctaagtaccttcaaaagctcagagatatacaaggctttcccgagttggatgtggaaagcggtcccaatcaagcatggtacttggagcagattctgagggaggtatgcactcaccctcagattcaaggaattgttatttgggctgcatggaaaccacaaggatgttacagaatgtgtttgacagacaacaatttcaagaacttaccgactggtgaagttgttgacaagctagctggcttcaccttttctgctacaacagattctaatggtgtcttcaaggcttgccttccccatggagattatgaagtgaaaatcactgatctggaatctgtgaaagtttctaccggtatggttcagggattgagtgtggcagcaagttccactgcataccaacaaccattgctggtccaacctgctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

416

Amino Acids

46.05

Weight (kDa)

5.58

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33830 AT4G33840 AT4G33860
fragaria_vesca	FvH4_2g03792 FvH4_2g03793 FvH4_2g03793 FvH4_2g03840 FvH4_3g40060
malus_domestica	MD05G1100700.v1.1 MD10G1105900.v1.1 MD10G1106500.v1.1
prunus_persica	Prupe.8G145100_v2.0.a1 Prupe.8G145200_v2.0.a1 Prupe.8G145300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072231 RchiOBHm_Chr6g0252841 RchiOBHm_Chr6g0252851
rosa_laevigata	RLG00000015059 RLG00000015061
rosa_multiflora	Rmu_co8129022.1_g000001 Rmu_sc0000714.1_g000002 Rmu_sc0000829.1_g000017 Rmu_sc0000829.1_g000029 Rmu_sc0028322.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212390
rosa_rugosa	Rorug05G0417000 Rorug05G0539100
rosa_samantha	Rh5DG505200 Rh6AG055100 Rh6BG049200 Rh6CG047900 Rh6CG048000 Rh6CG048100 Rh6DG043400 Rh6DG043600 Rh6DG043700
rosa_wichuraiana	Rw5G043950 Rw6G004970 Rw6G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	221
AccI	GTMKAC	1 cut(s)	188
AccII	CGCG	1 cut(s)	329
AciI	CCGC	2 cut(s)	329, 888
AclWI	GGATC	2 cut(s)	307, 731
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	665
AdeI	CACNNNGTG	1 cut(s)	724
AfaI	GTAC	4 cut(s)	626, 746, 836, 908
AfiI	CCNNNNNNNGG	2 cut(s)	134, 644
AgeI	ACCGGT	1 cut(s)	1172
AgsI	TTSAA	8 cut(s)	65, 286, 448, 608, 842, 953, 1024, 1105
AhlI	ACTAGT	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	2 cut(s)	949, 981
AluBI	AGCT	7 cut(s)	377, 382, 516, 755, 847, 1057, 1061
AluI	AGCT	7 cut(s)	377, 382, 516, 755, 847, 1057, 1061
Alw26I	GTCTC	3 cut(s)	436, 471, 810
AlwI	GGATC	2 cut(s)	307, 731
AlwNI	CAGNNNCTG	2 cut(s)	668, 922
Ama87I	CYCGRG	1 cut(s)	869
AoxI	GGCC	2 cut(s)	349, 715
ApeKI	GCWGC	5 cut(s)	31, 275, 971, 1199, 1244
ApoI	RAATTY	1 cut(s)	239
AsiGI	ACCGGT	1 cut(s)	1172
AspLEI	GCGC	1 cut(s)	533
AspS9I	GGNCC	2 cut(s)	890, 1234
AsuC2I	CCSGG	1 cut(s)	827
AsuHPI	GGTGA	4 cut(s)	544, 932, 1052, 1060
AsuNHI	GCTAGC	1 cut(s)	1057
AvaI	CYCGRG	1 cut(s)	869
AvaII	GGWCC	2 cut(s)	890, 1234
BbsI	GAAGAC	2 cut(s)	615, 1093
BbvI	GCAGC	5 cut(s)	18, 262, 958, 1211, 1231
BccI	CCATC	3 cut(s)	752, 756, 806
BceAI	ACGGC	1 cut(s)	187
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	827
BcoDI	GTCTC	3 cut(s)	436, 471, 810
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	3 cut(s)	45, 752, 1058
BfuAI	ACCTGC	1 cut(s)	221
BisI	GCNGC	5 cut(s)	32, 276, 972, 1200, 1245
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	5 cut(s)	33, 277, 973, 1201, 1246
Bme1390I	CCNGG	1 cut(s)	827
Bme18I	GGWCC	2 cut(s)	890, 1234
BmeT110I	CYCGRG	1 cut(s)	869
BmgT120I	GGNCC	2 cut(s)	890, 1234
BmiI	GGNNCC	1 cut(s)	892
BmrFI	CCNGG	1 cut(s)	827
BmsI	GCATC	4 cut(s)	190, 374, 518, 661
BmtI	GCTAGC	1 cut(s)	1061
BpiI	GAAGAC	2 cut(s)	615, 1093
BplI	GAGNNNNNCTC	4 cut(s)	493, 525, 644, 676
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	2 cut(s)	196, 326
BpuMI	CCSGG	1 cut(s)	827
BsaJI	CCNNGG	2 cut(s)	825, 1120
BsaWI	WCCGGW	1 cut(s)	1172
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 644
Bse118I	RCCGGY	1 cut(s)	1172
Bse1I	ACTGG	2 cut(s)	578, 1042
Bse3DI	GCAATG	2 cut(s)	702, 1226
BseDI	CCNNGG	2 cut(s)	825, 1120
BseGI	GGATG	4 cut(s)	533, 739, 883, 995
BseLI	CCNNNNNNNGG	2 cut(s)	134, 644
BseMI	GCAATG	2 cut(s)	702, 1226
BseMII	CTCAG	6 cut(s)	369, 675, 755, 862, 914, 959
BseNI	ACTGG	2 cut(s)	578, 1042
BseRI	GAGGAG	1 cut(s)	815
BseXI	GCAGC	5 cut(s)	18, 262, 958, 1211, 1231
BseYI	CCCAGC	2 cut(s)	373, 512
Bsh1236I	CGCG	1 cut(s)	329
BshFI	GGCC	2 cut(s)	351, 717
BshTI	ACCGGT	1 cut(s)	1172
BsiHKCI	CYCGRG	1 cut(s)	869
BsiSI	CCGG	2 cut(s)	827, 1173
BslFI	GGGAC	2 cut(s)	660, 876
BslI	CCNNNNNNNGG	2 cut(s)	134, 644
BsmAI	GTCTC	3 cut(s)	436, 471, 810
BsmBI	CGTCTC	1 cut(s)	436
BsmFI	GGGAC	2 cut(s)	660, 876
BsmI	GAATGC	2 cut(s)	13, 367
BsnI	GGCC	2 cut(s)	351, 717
BsoBI	CYCGRG	1 cut(s)	869
Bsp143I	GATC	4 cut(s)	299, 475, 736, 1147
Bsp1720I	GCTNAGC	1 cut(s)	378
Bsp19I	CCATGG	1 cut(s)	1120
BspACI	CCGC	2 cut(s)	329, 888
BspANI	GGCC	2 cut(s)	351, 717
BspCNI	CTCAG	6 cut(s)	370, 674, 754, 861, 915, 958
BspFNI	CGCG	1 cut(s)	329
BspHI	TCATGA	1 cut(s)	777
BspLI	GGNNCC	1 cut(s)	892
BspMI	ACCTGC	1 cut(s)	221
BspOI	GCTAGC	1 cut(s)	1061
BspPI	GGATC	2 cut(s)	307, 731
BsrDI	GCAATG	2 cut(s)	702, 1226
BsrFI	RCCGGY	1 cut(s)	1172
BsrI	ACTGG	2 cut(s)	578, 1042
BssAI	RCCGGY	1 cut(s)	1172
BssECI	CCNNGG	2 cut(s)	825, 1120
BssMI	GATC	4 cut(s)	299, 475, 736, 1147
BssT1I	CCWWGG	1 cut(s)	1120
Bst4CI	ACNGT	1 cut(s)	358
BstC8I	GCNNGC	5 cut(s)	13, 97, 1059, 1063, 1111
BstDEI	CTNAG	7 cut(s)	378, 661, 741, 831, 848, 923, 945
BstDSI	CCRYGG	1 cut(s)	1120
BstF5I	GGATG	4 cut(s)	533, 739, 883, 995
BstFNI	CGCG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	4 cut(s)	302, 478, 739, 1150
BstMAI	GTCTC	3 cut(s)	436, 471, 810
BstMBI	GATC	4 cut(s)	299, 475, 736, 1147
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 761
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	825
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	5 cut(s)	18, 262, 958, 1211, 1231
BstV2I	GAAGAC	2 cut(s)	615, 1093
BstXI	CCANNNNNNTGG	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	351, 717
BtgI	CCRYGG	1 cut(s)	1120
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	4 cut(s)	533, 739, 883, 995
BtsI	GCAGTG	1 cut(s)	1209
BtsIMutI	CAGTG	3 cut(s)	669, 1143, 1209
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	5 cut(s)	13, 97, 1059, 1063, 1111
CaiI	CAGNNNCTG	2 cut(s)	668, 922
CciI	TCATGA	1 cut(s)	777
CfoI	GCGC	1 cut(s)	533
Cfr10I	RCCGGY	1 cut(s)	1172
Cfr13I	GGNCC	2 cut(s)	890, 1234
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	4 cut(s)	625, 745, 835, 907
CspAI	ACCGGT	1 cut(s)	1172
CviAII	CATG	8 cut(s)	272, 311, 337, 778, 903, 975, 1121, 1248
CviQI	GTAC	4 cut(s)	625, 745, 835, 907
DdeI	CTNAG	7 cut(s)	378, 661, 741, 831, 848, 923, 945
DpnI	GATC	4 cut(s)	301, 477, 738, 1149
DpnII	GATC	4 cut(s)	299, 475, 736, 1147
DraIII	CACNNNGTG	1 cut(s)	724
Eco130I	CCWWGG	1 cut(s)	1120
Eco47I	GGWCC	2 cut(s)	890, 1234
Eco57I	CTGAAG	1 cut(s)	665
Eco88I	CYCGRG	1 cut(s)	869
EcoT14I	CCWWGG	1 cut(s)	1120
EcoT22I	ATGCAT	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	1120
Esp3I	CGTCTC	1 cut(s)	436
FaeI	CATG	8 cut(s)	275, 314, 340, 781, 906, 978, 1124, 1251
FaqI	GGGAC	2 cut(s)	660, 876
FatI	CATG	8 cut(s)	271, 310, 336, 777, 902, 974, 1120, 1247
FbaI	TGATCA	1 cut(s)	475
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	5 cut(s)	32, 276, 972, 1200, 1245
FokI	GGATG	4 cut(s)	540, 746, 890, 1002
Fsp4HI	GCNGC	5 cut(s)	32, 276, 972, 1200, 1245
FspBI	CTAG	3 cut(s)	45, 752, 1058
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	5 cut(s)	32, 276, 972, 1200, 1245
GsaI	CCCAGC	2 cut(s)	377, 516
HaeIII	GGCC	2 cut(s)	351, 717
HapII	CCGG	2 cut(s)	827, 1173
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	1 cut(s)	533
Hin1II	CATG	8 cut(s)	275, 314, 340, 781, 906, 978, 1124, 1251
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HincII	GTYRAC	1 cut(s)	1051
HindII	GTYRAC	1 cut(s)	1051
HinfI	GANTC	9 cut(s)	144, 221, 332, 594, 818, 919, 949, 1088, 1154
HpaII	CCGG	2 cut(s)	827, 1173
HphI	GGTGA	4 cut(s)	544, 932, 1052, 1060
Hpy166II	GTNNAC	4 cut(s)	154, 189, 579, 1051
Hpy188I	TCNGA	5 cut(s)	527, 713, 851, 924, 948
Hpy188III	TCNNGA	5 cut(s)	286, 778, 869, 1024, 1151
Hpy8I	GTNNAC	4 cut(s)	154, 189, 579, 1051
HpyAV	CCTTC	3 cut(s)	648, 848, 1124
HpyCH4III	ACNGT	1 cut(s)	358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 761
HpyF3I	CTNAG	7 cut(s)	378, 661, 741, 831, 848, 923, 945
Hsp92II	CATG	8 cut(s)	275, 314, 340, 781, 906, 978, 1124, 1251
HspAI	GCGC	1 cut(s)	531
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	4 cut(s)	299, 475, 736, 1147
LmnI	GCTCC	3 cut(s)	514, 761, 913
Lsp1109I	GCAGC	5 cut(s)	18, 262, 958, 1211, 1231
LweI	GCATC	4 cut(s)	190, 374, 518, 661
MaeI	CTAG	3 cut(s)	45, 752, 1058
MaeIII	GTNAC	3 cut(s)	233, 595, 992
MalI	GATC	4 cut(s)	301, 477, 738, 1149
MboI	GATC	4 cut(s)	299, 475, 736, 1147
MboII	GAAGA	3 cut(s)	502, 620, 1093
MluCI	AATT	4 cut(s)	69, 239, 957, 1018
MlyI	GAGTC	2 cut(s)	603, 812
MmeI	TCCRAC	2 cut(s)	235, 855
Mph1103I	ATGCAT	1 cut(s)	367
MslI	CAYNNNNRTG	2 cut(s)	315, 988
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	2 cut(s)	827, 1173
MspR9I	CCNGG	1 cut(s)	827
Mva1269I	GAATGC	2 cut(s)	13, 367
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	326, 761
NciI	CCSGG	1 cut(s)	827
NcoI	CCATGG	1 cut(s)	1120
NdeII	GATC	4 cut(s)	299, 475, 736, 1147
NheI	GCTAGC	1 cut(s)	1057
NlaIII	CATG	8 cut(s)	275, 314, 340, 781, 906, 978, 1124, 1251
NlaIV	GGNNCC	1 cut(s)	892
NmuCI	GTSAC	1 cut(s)	595
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	1 cut(s)	275
PagI	TCATGA	1 cut(s)	777
PctI	GAATGC	2 cut(s)	13, 367
PfeI	GAWTC	7 cut(s)	144, 221, 332, 919, 949, 1088, 1154
PinAI	ACCGGT	1 cut(s)	1172
PkrI	GCNGC	5 cut(s)	33, 277, 973, 1201, 1246
PleI	GAGTC	2 cut(s)	602, 812
PpsI	GAGTC	2 cut(s)	602, 812
PspFI	CCCAGC	2 cut(s)	373, 512
PspN4I	GGNNCC	1 cut(s)	892
PspPI	GGNCC	2 cut(s)	890, 1234
PstNI	CAGNNNCTG	2 cut(s)	668, 922
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	4 cut(s)	626, 746, 836, 908
RsaNI	GTAC	4 cut(s)	625, 745, 835, 907
RseI	CAYNNNNRTG	2 cut(s)	315, 988
SatI	GCNGC	5 cut(s)	32, 276, 972, 1200, 1245
Sau3AI	GATC	4 cut(s)	299, 475, 736, 1147
Sau96I	GGNCC	2 cut(s)	890, 1234
SchI	GAGTC	2 cut(s)	603, 812
ScrFI	CCNGG	1 cut(s)	827
SfaNI	GCATC	4 cut(s)	190, 374, 518, 661
SinI	GGWCC	2 cut(s)	890, 1234
SmiMI	CAYNNNNRTG	2 cut(s)	315, 988
SmlI	CTYRAG	2 cut(s)	175, 341
SmoI	CTYRAG	2 cut(s)	175, 341
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	4 cut(s)	69, 239, 957, 1018
SsiI	CCGC	2 cut(s)	329, 888
SspMI	CTAG	3 cut(s)	45, 752, 1058
StyD4I	CCNGG	1 cut(s)	825
StyI	CCWWGG	1 cut(s)	1120
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	584
TasI	AATT	4 cut(s)	69, 239, 957, 1018
TfiI	GAWTC	7 cut(s)	144, 221, 332, 919, 949, 1088, 1154
TscAI	CASTG	3 cut(s)	669, 1150, 1216
TseFI	GTSAC	1 cut(s)	595
TseI	GCWGC	5 cut(s)	31, 275, 971, 1199, 1244
Tsp45I	GTSAC	1 cut(s)	595
TspDTI	ATGAA	7 cut(s)	295, 299, 551, 632, 766, 794, 1146
TspRI	CASTG	3 cut(s)	669, 1150, 1216
VpaK11BI	GGWCC	2 cut(s)	890, 1234
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	755
XmiI	GTMKAC	1 cut(s)	188
XspI	CTAG	3 cut(s)	45, 752, 1058
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.