Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8129022.1

Orthogroup ID

OG0002751

Physical Location & Seq

Genomic Coordinates Reverse (-)

38 .. 364

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8129022.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgaacaagaacattctcaccaatactgcttaccaaaactggttcacttcgaggtttggagtcacaacttttgaagacgaaatgaaatggtacagcacagaaccttcacagggacaagaggactactcagtggctgatgccctgcttcagtttgctaaacaacagaacattgcagtcagaggccacaatgtgttctgggatgatcctcagtaccatctaggttgggtcaaatcactcgataaacaacaactggctctggctgcttccaagaggttaaattctgtcatgaacagatacaagggccaagttacattttcatttctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

108

Amino Acids

12.59

Weight (kDa)

7.99

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33830 AT4G33840 AT4G33860
fragaria_vesca	FvH4_2g03792 FvH4_2g03793 FvH4_2g03793 FvH4_2g03840 FvH4_3g40060
malus_domestica	MD05G1100700.v1.1 MD10G1105900.v1.1 MD10G1106500.v1.1
prunus_persica	Prupe.8G145100_v2.0.a1 Prupe.8G145200_v2.0.a1 Prupe.8G145300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072231 RchiOBHm_Chr6g0252841 RchiOBHm_Chr6g0252851
rosa_laevigata	RLG00000015059 RLG00000015061
rosa_multiflora	Rmu_co8129022.1_g000001 Rmu_sc0000714.1_g000002 Rmu_sc0000829.1_g000017 Rmu_sc0000829.1_g000029 Rmu_sc0028322.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212390
rosa_rugosa	Rorug05G0417000 Rorug05G0539100
rosa_samantha	Rh5DG505200 Rh6AG055100 Rh6BG049200 Rh6CG047900 Rh6CG048000 Rh6CG048100 Rh6DG043400 Rh6DG043600 Rh6DG043700
rosa_wichuraiana	Rw5G043950 Rw6G004970 Rw6G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	131
AdeI	CACNNNGTG	1 cut(s)	190
AfaI	GTAC	2 cut(s)	92, 212
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	74
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	2 cut(s)	181, 301
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	301
BmsI	GCATC	1 cut(s)	127
BpiI	GAAGAC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	44, 255
Bse3DI	GCAATG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	141, 221
BseNI	ACTGG	2 cut(s)	44, 255
BseXI	GCAGC	1 cut(s)	247
BshFI	GGCC	2 cut(s)	183, 303
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	126
BsnI	GGCC	2 cut(s)	183, 303
Bsp143I	GATC	1 cut(s)	202
BspANI	GGCC	2 cut(s)	183, 303
BspCNI	CTCAG	2 cut(s)	140, 220
BspHI	TCATGA	1 cut(s)	285
BspPI	GGATC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	44, 255
BssMI	GATC	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	127, 207
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	247
BstV2I	GAAGAC	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	183, 303
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	135
CaiI	CAGNNNCTG	1 cut(s)	134
CciI	TCATGA	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	91, 211
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	5 cut(s)	134, 183, 254, 260, 303
CviKI_1	RGCY	5 cut(s)	134, 183, 254, 260, 303
CviQI	GTAC	2 cut(s)	91, 211
DdeI	CTNAG	2 cut(s)	127, 207
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
DraIII	CACNNNGTG	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	131
FaeI	CATG	1 cut(s)	289
FaiI	YATR	1 cut(s)	287
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	183, 303
Hin1II	CATG	1 cut(s)	289
HinfI	GANTC	1 cut(s)	60
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	1 cut(s)	179
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	45
HpyAV	CCTTC	1 cut(s)	114
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	127, 207
Hsp92II	CATG	1 cut(s)	289
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	6 cut(s)	25, 95, 155, 181, 236, 242
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	2 cut(s)	61, 307
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	1 cut(s)	86
MluCI	AATT	1 cut(s)	277
MlyI	GAGTC	1 cut(s)	69
MnlI	CCTC	5 cut(s)	45, 112, 173, 216, 264
MseI	TTAA	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	61
PagI	TCATGA	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	92, 212
RsaNI	GTAC	2 cut(s)	91, 211
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	1 cut(s)	301
SchI	GAGTC	1 cut(s)	69
SetI	ASST	4 cut(s)	56, 106, 223, 275
SfaNI	GCATC	1 cut(s)	127
Sse9I	AATT	1 cut(s)	277
SspMI	CTAG	1 cut(s)	218
TaqI	TCGA	2 cut(s)	50, 237
TasI	AATT	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	135
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	4 cut(s)	17, 98, 302, 306
TspRI	CASTG	1 cut(s)	135
XapI	RAATTY	1 cut(s)	277
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.