Rh6CG048100

ubiquitin-dependent protein catabolic process

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
4758571 .. 4764213
5643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG048100.1

Sequence Viewer

Length: 1686 bp
ATGGTGAGACGAAGTCGACTTTTTGGTGATATTGAAGATGATGAAGGTGTTGGAGGTTCCAGCCACCCGTGTTTAGCAAATCCTCACAAACCCAAGTATGGTGGAGGTATCATTATAAACCCCGAGTTAAATGATGGGTTAAAAGGATGGACTTCTTTTGGCAAAGCAAAACTACAGCACACAGAATCACAGGGTAACAAATTCCTTGTGGCTCATAGTCGGATTCAACCGCATGATAGCATGTCTCAAAAGGTTTACTTACGAAGTGACAAGCTCTACACATTTTCTGCTTGGATACAAGCAAGTAGTGGCAGTAGCGTTCCAATAGCAGCTATTTTCAAGACAGCTTCTGGATTTATAAGTGCTGGTGAGATTATTGCGGAATCAAATTGTTGGTCCATGCTCAAGGGTGGTCTCACTGTCAAGGCTTCAGGCGATGCCGACCTCTATTTCGAGAGCAAGAACACTTCTGTTGAGATTTCGGTTGACAGCATCTCATTGCAACCGTTCACCAAAAAGCAATGGAAGTCTCATCAAGATCAAAGCATTGCCAATAATCGTAAAACCAAGGTGCGAATCCAAGCAGTTGATGCACAAGGCAATCCTCTACCAAATGCTACAATCTCCATCCAACAAAAGGCTCCAAGTTTCCCTTTTGGTTGTTGTATGACCAATCTCATCCTCAACAACCCTGCCCACCAAAAGTGGTTCACGTCAAGGTTCAGAGTAACAACATTTGCTAACGAAATGAAATGGTATAGCACAGAGAATGTCCAGGGACGTGAGGACTACTCAGTGCCTGATGCCATGCTTCAGTTTGCACAACAAAACAACATTGCAGTTAGAGGCCATAATGTGTTCTGGGATGATTCCCAGTACCAACTCGGTTGGGTCAAATCGCTCAATGAGCAACAACTTGAAAGTGCAACTAACAAGAGGCTAAATTCTGTTATGCAGAGATACAAGGGCAAGGTCATTGCTTGGGATGTTGTCAACGAAAATTTACATTGGAATTTCTTTGAAAGTAGGATGGGTGCAAATGCTTCAGCAATTTTTTATAACTGGGCTATTAAAGCTGATGGAGCAACCCCTTTGTTCTGGAATGACTTTAATACCATTGAGGATAGCAGAGATGAAGCAGCCTCTCCAGCTAAGTACCTTCAAAAGCTCAGAGATATACAAAGCTTTCCGGGTAATGAGGGCGGACGATATGGGATTGGGCTTGAGTCTCATTTCAATATTACTCCTAACATTCCTTACATACGAGCTTCTCTTGATACTCTTGGGGCTGCAAATGTGCCCATTTGGATCACAGAATTGGACGTAGCAGATCATCTTGATCAGCCAAGTATATTGGAGCAGCTTCTTAGAGAGTTGCATTCTCACCCTCAGATTCAAGGAATCATTATGTGGGCTGGACGGGGACTCCAAGGATGTTACAGAATGTGTTTGACAGATGAAAACTTTAACAACTTGCCAACCGGTGACGTTGTGGACAAGTTACTGAAGGAATGGGGTTATTGGAGCTCAGCTTCTTTCACAGCAGACTCCAATGGTTATTTTGAGGCCTCCCTTCCCCATGGAGATTATGACTTGAAGATCAGCCATTCTTCAGCCATAGATTCCTCCTTGGTTCACAAATTGAACGTGGCATCAACAACTAGGTCTCTGCAACTTTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

561

Amino Acids

62.71

Weight (kDa)

6.47

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBM_4_9 PF02018 37 - 155 7.6e-07 Carbohydrate binding domain
Glyco_hydro_10 PF00331 216 - 472 5.6e-41 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 116, 359, 1059
AccI GTMKAC 1 cut(s) 16
AciI CCGC 3 cut(s) 230, 380, 1203
AclWI GGATC 1 cut(s) 1316
AcsI RAATTY 4 cut(s) 200, 943, 1000, 1012
AcuI CTGAAG 5 cut(s) 414, 797, 1029, 1526, 1596
AfaI GTAC 2 cut(s) 878, 1157
AfiI CCNNNNNNNGG 2 cut(s) 98, 637
AgeI ACCGGT 1 cut(s) 1481
AjiI CACGTC 2 cut(s) 714, 782
AjnI CCWGG 1 cut(s) 774
Alw21I GWGCWC 1 cut(s) 1529
Alw26I GTCTC 5 cut(s) 249, 419, 534, 1233, 1671
AlwI GGATC 1 cut(s) 1316
AlwNI CAGNNNCTG 2 cut(s) 350, 800
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 2 cut(s) 847, 1566
ApeKI GCWGC 4 cut(s) 329, 1139, 1289, 1360
ApoI RAATTY 4 cut(s) 200, 943, 1000, 1012
ArsI GACNNNNNNTTYG 4 cut(s) 380, 412, 434, 466
AsiGI ACCGGT 1 cut(s) 1481
AspS9I GGNCC 1 cut(s) 396
AsuC2I CCSGG 1 cut(s) 1191
AsuHPI GGTGA 6 cut(s) 16, 38, 380, 502, 1376, 1496
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 1 cut(s) 396
BaeGI GKGCMC 1 cut(s) 1302
BanII GRGCYC 1 cut(s) 1529
Bbv12I GWGCWC 1 cut(s) 1529
BbvI GCAGC 4 cut(s) 341, 1151, 1276, 1372
BccI CCATC 5 cut(s) 128, 141, 635, 1024, 1073
BciT130I CCWGG 1 cut(s) 776
BciVI GTATCC 1 cut(s) 288
BclI TGATCA 1 cut(s) 1339
BcnI CCSGG 1 cut(s) 1191
BcoDI GTCTC 5 cut(s) 249, 419, 534, 1233, 1671
BfaI CTAG 1 cut(s) 1662
BfmI CTRYAG 1 cut(s) 173
BfuI GTATCC 1 cut(s) 288
BisI GCNGC 4 cut(s) 330, 1140, 1290, 1361
BlpI GCTNAGC 1 cut(s) 1528
BlsI GCNGC 4 cut(s) 331, 1141, 1291, 1362
Bme1390I CCNGG 2 cut(s) 776, 1191
Bme18I GGWCC 1 cut(s) 396
BmeT110I CYCGRG 1 cut(s) 122
BmgBI CACGTC 2 cut(s) 714, 782
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 2 cut(s) 58, 642
BmrFI CCNGG 2 cut(s) 776, 1191
BmrI ACTGGG 2 cut(s) 868, 1072
BmsI GCATC 5 cut(s) 427, 501, 580, 793, 1661
BmuI ACTGGG 2 cut(s) 868, 1072
BplI GAGNNNNNCTC 2 cut(s) 776, 808
BpmI CTGGAG 1 cut(s) 1131
Bpu1102I GCTNAGC 1 cut(s) 1528
BpuEI CTTGAG 2 cut(s) 389, 1244
BpuMI CCSGG 1 cut(s) 1191
BsaI GGTCTC 2 cut(s) 419, 1671
BsaJI CCNNGG 5 cut(s) 567, 775, 1429, 1579, 1629
BsaWI WCCGGW 1 cut(s) 1481
BsaXI ACNNNNNCTCC 2 cut(s) 1410, 1440
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 637
Bse118I RCCGGY 1 cut(s) 1481
Bse1I ACTGG 2 cut(s) 874, 1067
Bse3DI GCAATG 5 cut(s) 497, 527, 546, 834, 975
BseBI CCWGG 1 cut(s) 776
BseDI CCNNGG 5 cut(s) 567, 775, 1429, 1579, 1629
BseGI GGATG 7 cut(s) 152, 627, 678, 871, 991, 1035, 1439
BseLI CCNNNNNNNGG 2 cut(s) 98, 637
BseMI GCAATG 5 cut(s) 497, 527, 546, 834, 975
BseMII CTCAG 4 cut(s) 807, 1183, 1403, 1542
BseNI ACTGG 2 cut(s) 874, 1067
BseSI GKGCMC 1 cut(s) 1302
BseXI GCAGC 4 cut(s) 341, 1151, 1276, 1372
BshFI GGCC 2 cut(s) 849, 1568
BshTI ACCGGT 1 cut(s) 1481
BsiHKAI GWGCWC 1 cut(s) 1529
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 2 cut(s) 1190, 1482
BslFI GGGAC 2 cut(s) 792, 1437
BslI CCNNNNNNNGG 2 cut(s) 98, 637
BsmAI GTCTC 5 cut(s) 249, 419, 534, 1233, 1671
BsmFI GGGAC 2 cut(s) 792, 1437
BsmI GAATGC 1 cut(s) 1378
BsnI GGCC 2 cut(s) 849, 1568
Bso31I GGTCTC 2 cut(s) 419, 1671
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 2 cut(s) 1302, 1529
Bsp143I GATC 5 cut(s) 538, 1308, 1330, 1339, 1599
Bsp1720I GCTNAGC 1 cut(s) 1528
Bsp19I CCATGG 1 cut(s) 1579
BspACI CCGC 3 cut(s) 230, 380, 1203
BspANI GGCC 2 cut(s) 849, 1568
BspCNI CTCAG 4 cut(s) 806, 1182, 1402, 1541
BspLI GGNNCC 2 cut(s) 58, 642
BspPI GGATC 1 cut(s) 1316
BspTNI GGTCTC 2 cut(s) 419, 1671
BsrDI GCAATG 5 cut(s) 497, 527, 546, 834, 975
BsrFI RCCGGY 1 cut(s) 1481
BsrI ACTGG 2 cut(s) 874, 1067
BssAI RCCGGY 1 cut(s) 1481
BssECI CCNNGG 5 cut(s) 567, 775, 1429, 1579, 1629
BssMI GATC 5 cut(s) 538, 1308, 1330, 1339, 1599
BssT1I CCWWGG 4 cut(s) 567, 1429, 1579, 1629
Bst2UI CCWGG 1 cut(s) 776
Bst4CI ACNGT 2 cut(s) 421, 507
BstAPI GCANNNNNTGC 1 cut(s) 590
BstDEI CTNAG 6 cut(s) 793, 1152, 1169, 1367, 1389, 1528
BstDSI CCRYGG 1 cut(s) 1579
BstF5I GGATG 7 cut(s) 152, 627, 678, 871, 991, 1035, 1439
BstKTI GATC 5 cut(s) 541, 1311, 1333, 1342, 1602
BstMAI GTCTC 5 cut(s) 249, 419, 534, 1233, 1671
BstMBI GATC 5 cut(s) 538, 1308, 1330, 1339, 1599
BstMWI GCNNNNNNNGC 5 cut(s) 590, 907, 1073, 1082, 1148
BstNI CCWGG 1 cut(s) 776
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 774, 1189
BstSFI CTRYAG 1 cut(s) 173
BstSLI GKGCMC 1 cut(s) 1302
BstV1I GCAGC 4 cut(s) 341, 1151, 1276, 1372
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 2 cut(s) 849, 1568
BtgI CCRYGG 1 cut(s) 1579
BtgZI GCGATG 1 cut(s) 450
BtrI CACGTC 2 cut(s) 714, 782
BtsCI GGATG 7 cut(s) 152, 627, 678, 871, 991, 1035, 1439
BtsIMutI CAGTG 2 cut(s) 417, 801
CaiI CAGNNNCTG 2 cut(s) 350, 800
Cfr10I RCCGGY 1 cut(s) 1481
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 2 cut(s) 877, 1156
CspAI ACCGGT 1 cut(s) 1481
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviAII CATG 5 cut(s) 233, 241, 400, 808, 1580
CviQI GTAC 2 cut(s) 877, 1156
DdeI CTNAG 6 cut(s) 793, 1152, 1169, 1367, 1389, 1528
DpnI GATC 5 cut(s) 540, 1310, 1332, 1341, 1601
DpnII GATC 5 cut(s) 538, 1308, 1330, 1339, 1599
EciI GGCGGA 1 cut(s) 1218
Ecl136II GAGCTC 1 cut(s) 1527
Eco130I CCWWGG 4 cut(s) 567, 1429, 1579, 1629
Eco147I AGGCCT 1 cut(s) 1568
Eco24I GRGCYC 1 cut(s) 1529
Eco31I GGTCTC 2 cut(s) 419, 1671
Eco47I GGWCC 1 cut(s) 396
Eco53kI GAGCTC 1 cut(s) 1527
Eco57I CTGAAG 5 cut(s) 414, 797, 1029, 1526, 1596
Eco88I CYCGRG 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 1527
EcoRII CCWGG 1 cut(s) 774
EcoT14I CCWWGG 4 cut(s) 567, 1429, 1579, 1629
EcoT38I GRGCYC 1 cut(s) 1529
ErhI CCWWGG 4 cut(s) 567, 1429, 1579, 1629
FaeI CATG 5 cut(s) 236, 244, 403, 811, 1583
FalI AAGNNNNNCTT 4 cut(s) 242, 274, 637, 669
FaqI GGGAC 2 cut(s) 792, 1437
FatI CATG 5 cut(s) 232, 240, 399, 807, 1579
FbaI TGATCA 1 cut(s) 1339
FblI GTMKAC 1 cut(s) 16
Fnu4HI GCNGC 4 cut(s) 330, 1140, 1290, 1361
FokI GGATG 7 cut(s) 159, 614, 665, 878, 998, 1042, 1446
FriOI GRGCYC 1 cut(s) 1529
Fsp4HI GCNGC 4 cut(s) 330, 1140, 1290, 1361
FspBI CTAG 1 cut(s) 1662
GluI GCNGC 4 cut(s) 330, 1140, 1290, 1361
GsuI CTGGAG 1 cut(s) 1131
HaeIII GGCC 2 cut(s) 849, 1568
HapII CCGG 2 cut(s) 1190, 1482
Hin1II CATG 5 cut(s) 236, 244, 403, 811, 1583
HincII GTYRAC 3 cut(s) 17, 487, 994
HindII GTYRAC 3 cut(s) 17, 487, 994
HindIII AAGCTT 1 cut(s) 1183
HpaII CCGG 2 cut(s) 1190, 1482
HphI GGTGA 6 cut(s) 16, 38, 380, 502, 1376, 1496
Hpy166II GTNNAC 8 cut(s) 17, 256, 487, 510, 711, 994, 1495, 1636
Hpy188I TCNGA 4 cut(s) 222, 725, 1172, 1392
Hpy188III TCNNGA 7 cut(s) 340, 351, 454, 536, 1099, 1274, 1337
Hpy8I GTNNAC 8 cut(s) 17, 256, 487, 510, 711, 994, 1495, 1636
HpyAV CCTTC 4 cut(s) 38, 1169, 1501, 1583
HpyCH4III ACNGT 2 cut(s) 421, 507
HpyCH4IV ACGT 5 cut(s) 713, 781, 1323, 1488, 1647
HpyF10VI GCNNNNNNNGC 5 cut(s) 590, 907, 1073, 1082, 1148
HpyF3I CTNAG 6 cut(s) 793, 1152, 1169, 1367, 1389, 1528
HpySE526I ACGT 5 cut(s) 713, 781, 1323, 1488, 1647
Hsp92II CATG 5 cut(s) 236, 244, 403, 811, 1583
Ksp22I TGATCA 1 cut(s) 1339
Kzo9I GATC 5 cut(s) 538, 1308, 1330, 1339, 1599
LmnI GCTCC 4 cut(s) 646, 1082, 1357, 1524
Lsp1109I GCAGC 4 cut(s) 341, 1151, 1276, 1372
LweI GCATC 5 cut(s) 427, 501, 580, 793, 1661
MaeI CTAG 1 cut(s) 1662
MaeII ACGT 5 cut(s) 713, 781, 1323, 1488, 1647
MaeIII GTNAC 6 cut(s) 194, 266, 727, 1436, 1484, 1500
MalI GATC 5 cut(s) 540, 1310, 1332, 1341, 1601
MboI GATC 5 cut(s) 538, 1308, 1330, 1339, 1599
MboII GAAGA 3 cut(s) 47, 1602, 1609
MhlI GDGCHC 2 cut(s) 1302, 1529
MluCI AATT 8 cut(s) 200, 388, 943, 1000, 1012, 1050, 1316, 1640
MlyI GAGTC 3 cut(s) 1235, 1419, 1541
MmeI TCCRAC 3 cut(s) 31, 200, 655
MseI TTAA 6 cut(s) 128, 140, 1071, 1110, 1467, 1684
MspI CCGG 2 cut(s) 1190, 1482
MspR9I CCNGG 2 cut(s) 776, 1191
Mva1269I GAATGC 1 cut(s) 1378
MvaI CCWGG 1 cut(s) 776
MwoI GCNNNNNNNGC 5 cut(s) 590, 907, 1073, 1082, 1148
NciI CCSGG 1 cut(s) 1191
NcoI CCATGG 1 cut(s) 1579
NdeII GATC 5 cut(s) 538, 1308, 1330, 1339, 1599
NlaIII CATG 5 cut(s) 236, 244, 403, 811, 1583
NlaIV GGNNCC 2 cut(s) 58, 642
NmuCI GTSAC 2 cut(s) 266, 1484
NspI RCATGY 1 cut(s) 244
PceI AGGCCT 1 cut(s) 1568
PctI GAATGC 1 cut(s) 1378
PfeI GAWTC 8 cut(s) 185, 223, 383, 576, 869, 1393, 1401, 1622
PflFI GACNNNGTC 1 cut(s) 12
PinAI ACCGGT 1 cut(s) 1481
PkrI GCNGC 4 cut(s) 331, 1141, 1291, 1362
PleI GAGTC 3 cut(s) 1234, 1419, 1541
PpsI GAGTC 3 cut(s) 1234, 1419, 1541
PsiI TTATAA 3 cut(s) 116, 359, 1059
Psp124BI GAGCTC 1 cut(s) 1529
Psp6I CCWGG 1 cut(s) 774
PspGI CCWGG 1 cut(s) 774
PspN4I GGNNCC 2 cut(s) 58, 642
PspPI GGNCC 1 cut(s) 396
PstNI CAGNNNCTG 2 cut(s) 350, 800
PsyI GACNNNGTC 1 cut(s) 12
RsaI GTAC 2 cut(s) 878, 1157
RsaNI GTAC 2 cut(s) 877, 1156
SacI GAGCTC 1 cut(s) 1529
SalI GTCGAC 1 cut(s) 15
SaqAI TTAA 6 cut(s) 128, 140, 1071, 1110, 1467, 1684
SatI GCNGC 4 cut(s) 330, 1140, 1290, 1361
Sau3AI GATC 5 cut(s) 538, 1308, 1330, 1339, 1599
Sau96I GGNCC 1 cut(s) 396
SchI GAGTC 3 cut(s) 1235, 1419, 1541
ScrFI CCNGG 2 cut(s) 776, 1191
SduI GDGCHC 2 cut(s) 1302, 1529
SfaNI GCATC 5 cut(s) 427, 501, 580, 793, 1661
SfcI CTRYAG 1 cut(s) 173
SinI GGWCC 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 404, 1223
SmoI CTYRAG 2 cut(s) 404, 1223
Sse9I AATT 8 cut(s) 200, 388, 943, 1000, 1012, 1050, 1316, 1640
SseBI AGGCCT 1 cut(s) 1568
SsiI CCGC 3 cut(s) 230, 380, 1203
SspI AATATT 1 cut(s) 1240
SspMI CTAG 1 cut(s) 1662
SstI GAGCTC 1 cut(s) 1529
StuI AGGCCT 1 cut(s) 1568
StyD4I CCNGG 2 cut(s) 774, 1189
StyI CCWWGG 4 cut(s) 567, 1429, 1579, 1629
TaaI ACNGT 2 cut(s) 421, 507
TaiI ACGT 5 cut(s) 716, 784, 1326, 1491, 1650
TaqI TCGA 2 cut(s) 16, 453
TasI AATT 8 cut(s) 200, 388, 943, 1000, 1012, 1050, 1316, 1640
TfiI GAWTC 8 cut(s) 185, 223, 383, 576, 869, 1393, 1401, 1622
Tru1I TTAA 6 cut(s) 128, 140, 1071, 1110, 1467, 1684
Tru9I TTAA 6 cut(s) 128, 140, 1071, 1110, 1467, 1684
TscAI CASTG 2 cut(s) 424, 801
TseFI GTSAC 2 cut(s) 266, 1484
TseI GCWGC 4 cut(s) 329, 1139, 1289, 1360
Tsp45I GTSAC 2 cut(s) 266, 1484
TspDTI ATGAA 4 cut(s) 57, 764, 1149, 1473
TspRI CASTG 2 cut(s) 424, 801
Tth111I GACNNNGTC 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 396
XapI RAATTY 4 cut(s) 200, 943, 1000, 1012
XceI RCATGY 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 16
XspI CTAG 1 cut(s) 1662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.