Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002751

Physical Location & Seq

Genomic Coordinates Reverse (-)

4670215 .. 4672560

Gene Structure 2346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG043600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTCTCAAAAGGTTTACTTGCAAAGTGACAAGCTCTACACATTTTCTGCTTGGATAAAAGTGAATACTGGTAGTGACGTTCCAGTAGCAGCTACTTTCAAGACAGCTTCTGGATTCAAACGTGCTGGTGAGATCATTGCAGAATCAAATTATTGGTGCATGCTCAAGGGTGGTCTAACAGTTGAAGCTTCAGGCGCTGCGGAGCTCTATTTTGAGAGCAAGAACACCTCCGTTGAGATCTGGGTTGACAGCATCTCGTTGCAACCATTCACCGAAAAGGAATGGAAGTCTCATCAAGATCGAAGCATTGCCAAGAATCGTAAGAGCAAAGTGCACATCCAAGCAGTTGATGCAGAAGGAAATCCTCTGCCAAATGCAACTATATCCATCCAACAAAACGTTCCAAGTTTCCCTTTTGGTTGTTCCATTACCAAGCTCATCCTCAACAACCCTGCCCACCAAAATTGGTTCACGTCAAGGTTCACAGTAACAACATTTGGGGATGAAATGAAATGGTACAGTACAGAGAGTGTCCAGGGACGTGAGGACTACTCGGTAGCTGATGCCATGCTTCAGTTTGCTGAAGAAAACAACATTGTAGTCAGAGGCCACAATGTGTTCTGGGATGATCCGCAATACCAACTCAGTTGGGTCAAATCACTCAATACACGTCAACTTATTAATGCAACTTACAAGAGGCTAAATTCTATCATGCAGAGATATAAAAGCAAGCTCATTGCCTGGGATGTTGTTAACGAAAATTTACATTGGAATTTCTTTGAAAGTAGGATGGTTGCAAATGCTTCAGCAATTTTTTATAACTGGGCTATTAAAGCTGATGGAGAAACCCCCTTGTTCCTGAATGATTTTAATACCATTGAAGAGAGCAGAGATGGAGCATCCATGCCGGCTATGTACCTTCGAAAGCTCAGAGAGATTCAGAGCTTTCCAGGCAACAGTGGAGGACGGTTTGGGATTGGGCTTGAATCTCATTTCAATAGTAGTACTCCAAACCTTCCTTACATAAGAGCTTCTCTCGATACGCTTGGGGTTGCAAATGTGCCCATTTGGATCACTGAATTGGACGTGGCAAGCCATCTCGATCAGGTACTAGATCTAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

374

Amino Acids

42.36

Weight (kDa)

5.73

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_10	PF00331	137 - 366	3.4e-34	Glycosyl hydrolase family 10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33830 AT4G33840 AT4G33860
fragaria_vesca	FvH4_2g03792 FvH4_2g03793 FvH4_2g03793 FvH4_2g03840 FvH4_3g40060
malus_domestica	MD05G1100700.v1.1 MD10G1105900.v1.1 MD10G1106500.v1.1
prunus_persica	Prupe.8G145100_v2.0.a1 Prupe.8G145200_v2.0.a1 Prupe.8G145300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072231 RchiOBHm_Chr6g0252841 RchiOBHm_Chr6g0252851
rosa_laevigata	RLG00000015059 RLG00000015061
rosa_multiflora	Rmu_co8129022.1_g000001 Rmu_sc0000714.1_g000002 Rmu_sc0000829.1_g000017 Rmu_sc0000829.1_g000029 Rmu_sc0028322.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212390
rosa_rugosa	Rorug05G0417000 Rorug05G0539100
rosa_samantha	Rh5DG505200 Rh6AG055100 Rh6BG049200 Rh6CG047900 Rh6CG048000 Rh6CG048100 Rh6DG043400 Rh6DG043600 Rh6DG043700
rosa_wichuraiana	Rw5G043950 Rw6G004970 Rw6G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	819
AciI	CCGC	2 cut(s)	200, 632
AclI	AACGTT	1 cut(s)	399
AclWI	GGATC	2 cut(s)	623, 1079
AcsI	RAATTY	3 cut(s)	703, 760, 772
AcuI	CTGAAG	4 cut(s)	174, 557, 603, 789
AdeI	CACNNNGTG	1 cut(s)	616
AfaI	GTAC	5 cut(s)	518, 523, 917, 1006, 1110
AflIII	ACRYGT	1 cut(s)	668
AgsI	TTSAA	7 cut(s)	100, 118, 185, 782, 881, 986, 997
AjiI	CACGTC	4 cut(s)	474, 542, 671, 1087
AjnI	CCWGG	3 cut(s)	534, 740, 949
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
Alw21I	GWGCWC	2 cut(s)	207, 336
Alw26I	GTCTC	2 cut(s)	9, 294
Alw44I	GTGCAC	1 cut(s)	332
AlwI	GGATC	2 cut(s)	623, 1079
AlwNI	CAGNNNCTG	2 cut(s)	110, 197
AoxI	GGCC	1 cut(s)	607
ApaLI	GTGCAC	1 cut(s)	332
ApeKI	GCWGC	2 cut(s)	89, 197
ApoI	RAATTY	3 cut(s)	703, 760, 772
AseI	ATTAAT	1 cut(s)	681
AspLEI	GCGC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	140, 262
AsuII	TTCGAA	1 cut(s)	922
BaeGI	GKGCMC	2 cut(s)	336, 1065
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	207, 336
BbvI	GCAGC	2 cut(s)	101, 184
BccI	CCATC	5 cut(s)	395, 784, 833, 887, 1104
BciT130I	CCWGG	3 cut(s)	536, 742, 951
BcoDI	GTCTC	2 cut(s)	9, 294
BfaI	CTAG	2 cut(s)	1112, 1118
BfoI	RGCGCY	1 cut(s)	198
BglII	AGATCT	2 cut(s)	237, 1114
BisI	GCNGC	2 cut(s)	90, 198
BlsI	GCNGC	2 cut(s)	91, 199
BmcAI	AGTACT	1 cut(s)	1006
Bme1390I	CCNGG	3 cut(s)	536, 742, 951
BmgBI	CACGTC	4 cut(s)	474, 542, 671, 1087
BmrFI	CCNGG	3 cut(s)	536, 742, 951
BmrI	ACTGGG	1 cut(s)	832
BmsI	GCATC	4 cut(s)	261, 340, 553, 908
BmuI	ACTGGG	1 cut(s)	832
BplI	GAGNNNNNCTC	4 cut(s)	536, 568, 1020, 1052
Bpu14I	TTCGAA	1 cut(s)	922
BpuEI	CTTGAG	1 cut(s)	149
BsaJI	CCNNGG	2 cut(s)	535, 741
Bse118I	RCCGGY	1 cut(s)	907
Bse1I	ACTGG	3 cut(s)	73, 83, 827
Bse3DI	GCAATG	3 cut(s)	135, 306, 735
BseBI	CCWGG	3 cut(s)	536, 742, 951
BseDI	CCNNGG	2 cut(s)	535, 741
BseGI	GGATG	8 cut(s)	336, 387, 438, 508, 631, 751, 795, 899
BseMI	GCAATG	3 cut(s)	135, 306, 735
BseMII	CTCAG	2 cut(s)	658, 943
BseNI	ACTGG	3 cut(s)	73, 83, 827
BseSI	GKGCMC	2 cut(s)	336, 1065
BseXI	GCAGC	2 cut(s)	101, 184
BshFI	GGCC	1 cut(s)	609
BsiHKAI	GWGCWC	2 cut(s)	207, 336
BsiSI	CCGG	1 cut(s)	908
BslFI	GGGAC	1 cut(s)	552
BsmAI	GTCTC	2 cut(s)	9, 294
BsmFI	GGGAC	1 cut(s)	552
BsnI	GGCC	1 cut(s)	609
Bsp119I	TTCGAA	1 cut(s)	922
Bsp1286I	GDGCHC	3 cut(s)	207, 336, 1065
Bsp143I	GATC	7 cut(s)	132, 237, 298, 628, 1071, 1102, 1114
BspACI	CCGC	2 cut(s)	200, 632
BspANI	GGCC	1 cut(s)	609
BspCNI	CTCAG	2 cut(s)	657, 942
BspPI	GGATC	2 cut(s)	623, 1079
BspT104I	TTCGAA	1 cut(s)	922
BsrDI	GCAATG	3 cut(s)	135, 306, 735
BsrFI	RCCGGY	1 cut(s)	907
BsrI	ACTGG	3 cut(s)	73, 83, 827
BssAI	RCCGGY	1 cut(s)	907
BssECI	CCNNGG	2 cut(s)	535, 741
BssMI	GATC	7 cut(s)	132, 237, 298, 628, 1071, 1102, 1114
Bst2UI	CCWGG	3 cut(s)	536, 742, 951
Bst4CI	ACNGT	5 cut(s)	181, 487, 521, 959, 969
Bst6I	CTCTTC	1 cut(s)	876
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	922
BstC8I	GCNNGC	4 cut(s)	161, 731, 909, 1093
BstDEI	CTNAG	2 cut(s)	644, 929
BstF5I	GGATG	8 cut(s)	336, 387, 438, 508, 631, 751, 795, 899
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	7 cut(s)	135, 240, 301, 631, 1074, 1105, 1117
BstMAI	GTCTC	2 cut(s)	9, 294
BstMBI	GATC	7 cut(s)	132, 237, 298, 628, 1071, 1102, 1114
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 350, 833, 951
BstNI	CCWGG	3 cut(s)	536, 742, 951
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	3 cut(s)	534, 740, 949
BstSLI	GKGCMC	2 cut(s)	336, 1065
BstV1I	GCAGC	2 cut(s)	101, 184
BstX2I	RGATCY	2 cut(s)	237, 1114
BstYI	RGATCY	2 cut(s)	237, 1114
BsuRI	GGCC	1 cut(s)	609
BtrI	CACGTC	4 cut(s)	474, 542, 671, 1087
BtsCI	GGATG	8 cut(s)	336, 387, 438, 508, 631, 751, 795, 899
BtsIMutI	CAGTG	2 cut(s)	964, 1074
Cac8I	GCNNGC	4 cut(s)	161, 731, 909, 1093
CaiI	CAGNNNCTG	2 cut(s)	110, 197
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	907
Csp6I	GTAC	5 cut(s)	517, 522, 916, 1005, 1109
CspCI	CAANNNNNGTGG	2 cut(s)	446, 481
CviAII	CATG	4 cut(s)	160, 568, 712, 904
CviQI	GTAC	5 cut(s)	517, 522, 916, 1005, 1109
DdeI	CTNAG	2 cut(s)	644, 929
DpnI	GATC	7 cut(s)	134, 239, 300, 630, 1073, 1104, 1116
DpnII	GATC	7 cut(s)	132, 237, 298, 628, 1071, 1102, 1114
DraIII	CACNNNGTG	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	876
EarI	CTCTTC	1 cut(s)	876
Ecl136II	GAGCTC	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	4 cut(s)	174, 557, 603, 789
EcoICRI	GAGCTC	1 cut(s)	205
EcoRII	CCWGG	3 cut(s)	534, 740, 949
EcoT38I	GRGCYC	1 cut(s)	207
FaeI	CATG	4 cut(s)	163, 571, 715, 907
FaiI	YATR	9 cut(s)	161, 383, 569, 713, 723, 819, 905, 914, 1025
FalI	AAGNNNNNCTT	3 cut(s)	34, 397, 429
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	4 cut(s)	159, 567, 711, 903
Fnu4HI	GCNGC	2 cut(s)	90, 198
FokI	GGATG	8 cut(s)	323, 374, 425, 515, 638, 758, 802, 886
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	2 cut(s)	90, 198
FspBI	CTAG	2 cut(s)	1112, 1118
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	90, 198
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	609
HapII	CCGG	1 cut(s)	908
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	4 cut(s)	163, 571, 715, 907
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	3 cut(s)	247, 674, 754
HindII	GTYRAC	3 cut(s)	247, 674, 754
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	5 cut(s)	114, 143, 316, 937, 986
HpaI	GTTAAC	1 cut(s)	754
HpaII	CCGG	1 cut(s)	908
HphI	GGTGA	2 cut(s)	140, 262
Hpy166II	GTNNAC	7 cut(s)	16, 247, 334, 471, 483, 674, 754
Hpy188I	TCNGA	3 cut(s)	605, 932, 942
Hpy188III	TCNNGA	7 cut(s)	100, 111, 296, 859, 1037, 1100, 1118
Hpy8I	GTNNAC	7 cut(s)	16, 247, 334, 471, 483, 674, 754
HpyAV	CCTTC	3 cut(s)	350, 929, 1025
HpyCH4III	ACNGT	5 cut(s)	181, 487, 521, 959, 969
HpyCH4IV	ACGT	7 cut(s)	78, 121, 399, 473, 541, 670, 1086
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 350, 833, 951
HpyF3I	CTNAG	2 cut(s)	644, 929
HpySE526I	ACGT	7 cut(s)	78, 121, 399, 473, 541, 670, 1086
Hsp92II	CATG	4 cut(s)	163, 571, 715, 907
HspAI	GCGC	1 cut(s)	195
KroI	GCCGGC	1 cut(s)	907
KroNI	GCCGGC	1 cut(s)	909
KspAI	GTTAAC	1 cut(s)	754
Kzo9I	GATC	7 cut(s)	132, 237, 298, 628, 1071, 1102, 1114
LmnI	GCTCC	2 cut(s)	202, 896
Lsp1109I	GCAGC	2 cut(s)	101, 184
LweI	GCATC	4 cut(s)	261, 340, 553, 908
MaeI	CTAG	2 cut(s)	1112, 1118
MaeII	ACGT	7 cut(s)	78, 121, 399, 473, 541, 670, 1086
MaeIII	GTNAC	3 cut(s)	26, 74, 487
MalI	GATC	7 cut(s)	134, 239, 300, 630, 1073, 1104, 1116
MboI	GATC	7 cut(s)	132, 237, 298, 628, 1071, 1102, 1114
MboII	GAAGA	2 cut(s)	596, 893
MflI	RGATCY	2 cut(s)	237, 1114
MhlI	GDGCHC	3 cut(s)	207, 336, 1065
MluCI	AATT	7 cut(s)	148, 463, 703, 760, 772, 810, 1079
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	7 cut(s)	238, 375, 452, 538, 599, 690, 956
MroNI	GCCGGC	1 cut(s)	907
MseI	TTAA	4 cut(s)	681, 753, 831, 870
MspI	CCGG	1 cut(s)	908
MspR9I	CCNGG	3 cut(s)	536, 742, 951
MvaI	CCWGG	3 cut(s)	536, 742, 951
MwoI	GCNNNNNNNGC	4 cut(s)	194, 350, 833, 951
NaeI	GCCGGC	1 cut(s)	909
NdeII	GATC	7 cut(s)	132, 237, 298, 628, 1071, 1102, 1114
NgoMIV	GCCGGC	1 cut(s)	907
NlaIII	CATG	4 cut(s)	163, 571, 715, 907
NmuCI	GTSAC	2 cut(s)	26, 74
NspI	RCATGY	1 cut(s)	163
NspV	TTCGAA	1 cut(s)	922
PaeI	GCATGC	1 cut(s)	163
PdiI	GCCGGC	1 cut(s)	909
PfeI	GAWTC	5 cut(s)	114, 143, 316, 937, 986
PkrI	GCNGC	2 cut(s)	91, 199
PshBI	ATTAAT	1 cut(s)	681
PsiI	TTATAA	1 cut(s)	819
Psp124BI	GAGCTC	1 cut(s)	207
Psp1406I	AACGTT	1 cut(s)	399
Psp6I	CCWGG	3 cut(s)	534, 740, 949
PspGI	CCWGG	3 cut(s)	534, 740, 949
PstNI	CAGNNNCTG	2 cut(s)	110, 197
PsuI	RGATCY	2 cut(s)	237, 1114
RsaI	GTAC	5 cut(s)	518, 523, 917, 1006, 1110
RsaNI	GTAC	5 cut(s)	517, 522, 916, 1005, 1109
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	4 cut(s)	681, 753, 831, 870
SatI	GCNGC	2 cut(s)	90, 198
Sau3AI	GATC	7 cut(s)	132, 237, 298, 628, 1071, 1102, 1114
ScaI	AGTACT	1 cut(s)	1006
ScrFI	CCNGG	3 cut(s)	536, 742, 951
SduI	GDGCHC	3 cut(s)	207, 336, 1065
SfaNI	GCATC	4 cut(s)	261, 340, 553, 908
SfuI	TTCGAA	1 cut(s)	922
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	7 cut(s)	148, 463, 703, 760, 772, 810, 1079
SsiI	CCGC	2 cut(s)	200, 632
SspMI	CTAG	2 cut(s)	1112, 1118
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	3 cut(s)	534, 740, 949
TaaI	ACNGT	5 cut(s)	181, 487, 521, 959, 969
TaiI	ACGT	7 cut(s)	81, 124, 402, 476, 544, 673, 1089
TaqI	TCGA	4 cut(s)	301, 922, 1038, 1101
TasI	AATT	7 cut(s)	148, 463, 703, 760, 772, 810, 1079
TatI	WGTACW	2 cut(s)	521, 1004
TfiI	GAWTC	5 cut(s)	114, 143, 316, 937, 986
Tru1I	TTAA	4 cut(s)	681, 753, 831, 870
Tru9I	TTAA	4 cut(s)	681, 753, 831, 870
TscAI	CASTG	2 cut(s)	964, 1081
TseFI	GTSAC	2 cut(s)	26, 74
TseI	GCWGC	2 cut(s)	89, 197
Tsp45I	GTSAC	2 cut(s)	26, 74
TspDTI	ATGAA	2 cut(s)	519, 524
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	2 cut(s)	964, 1081
VneI	GTGCAC	1 cut(s)	332
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	3 cut(s)	703, 760, 772
XbaI	TCTAGA	1 cut(s)	1117
XceI	RCATGY	1 cut(s)	163
XspI	CTAG	2 cut(s)	1112, 1118
ZrmI	AGTACT	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.