RLG00000015059

ubiquitin-dependent protein catabolic process

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
61105485 .. 61109049
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015059

Sequence Viewer

Length: 1779 bp
ATGTTTGTGGTTGAGCCCCAATCCAAGTTCGATCCCCGCAATCCTATGTTGAATCACGCGATCTATAATCTCTTCCAAAAATCCATACCTGGAGGCTGTAGAGACAGGATGAGTATTTTGCAGTGTTTGAAGTTGAAGCCTTACCCTACGATTACTCAGCAATGTTTAGCAAATCCTCAGAAACCCAAGTATGGTGGAGGTATCATTATAAACCCCGAGTTAAATGATGGGTTAAAAGGATGGACTTCTTTTGGCAAAGCAAAACTACAGCACACAGAATCACAGGGTAACAAATTCCTTGTGGCTCATAGTCGAATTCAACCTCATGATAGCATGTCTCAAAAGGTTTACTTACGAAGTGACAAGCTCTACACACTTTCTGCTTGGATACAAGCAAGTAGTGGCAGTAGCGTTCCAATAGCAGCTATTTTCAAGACAGCTTCTGGATTTATAAGTGCTGGTGAGATTATTGCGGAATCAAATTGTTGGTCCATGCTCAAGGGTGGTTTAACTGTCAAGGCTTCAGGCGATGCCGAGCTCTATTTCGAGAGCAAGAACACTTCTGTTGAGATTTGGGTTGACAGCATCTCATTGCAACCGTTCACCAAAAAGCAATGGAAGTCGCATCAAGATCAAAGCATTGCCAATAATCGTAAAACCAAGGTGCGAATCCAAGCAGTTGATGCACAAGGCAATCCTCTATCAAATGCTACAATCTCCATCCAACAAAAGGCTCCAAGTTTCCCTTTTGGTTGTTGTATGACCAATCTCATCCTCAACAACCCTGCCCACCAAAAGTGGTTCACGTCAAGGTTCAGAGTAACAACATTTGCTAACGAAATGAAATGGTATAGCACAGAGAATGTCCAGGGACGTGAGGACTACTCAGTGCCTGATGCCATGCTTCAGTTTGCACAACAAAACAACATTGCAGTTAGAGGCCATAATGTGTTCTGGGATGATTCCCAGTACCAACTCGGTTGGGTCAAATCGCTCAATGAGCAACAACTTGAAAGTGCAACTAACAAGAGGCTAAATTCTGTTATGCAGAGATACAAGGGCAAGGTCATTGCTTGGGATGTTGTCAACGAAAATTTACATTGGAATTTCTTTGAAAGTAGGATGGGTGCAAATGCTTCAGCAATTTTTTATAACTGGGCTATTAAAGCTGATGGAGCAACCCCCTTGTTCTTGAATGACTTTAATACCATTGAGGATAGCAGAGATGAAGCAGCCTCTCCAGCTAAGTACCTTCAAAAGCTCAGAGATATACAAAGCTTTCCGGGTAATGAAGGCGGACGATATGGGATTGGGCTTGAGTCTCATTTCAATATTACTCCCAACATTCCTTACATACGAGCTTCTCTTGATACTCTTGGGGCTGCAAATGTGCCCCTTTGGATCACAGAATTGGACGTAGCAGATCATCTTGATCAGCCAAGTATATTGGAGCAGCTTCTTAGAGAGTTGCATTCTCACCCTATGATTCAAGGAATCATTATGTGGGCTGGACGGGGACCCCAAGGATGTTACAGAATGTGTTTGACAGACGAAAACTTTAACAACTTGCCAACCGGTGACGTTGTGGACAAGTTACTGAAGGAATGGGGTTATTGGAGCTCAGCTTCTTTCACAGCAGACTCCAATGGTTATTTTCAGGCCTCCCTTCCCCATGGAGATTATGACTTGAAGATCAGCCATTCTTCAGCCATAGATTCCTCCTTGGTTCACAAATTGAACGTGGCATCAACAACTAGGTCTCTGCAACTTTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

593

Amino Acids

66.46

Weight (kDa)

8.25

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBM_4_9 PF02018 68 - 186 1.4e-06 Carbohydrate binding domain
Glyco_hydro_10 PF00331 247 - 503 6e-40 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 209, 452, 1152
AccII CGCG 1 cut(s) 59
AciI CCGC 3 cut(s) 37, 473, 1296
AclWI GGATC 2 cut(s) 26, 1409
AcsI RAATTY 5 cut(s) 293, 315, 1036, 1093, 1105
AcuI CTGAAG 5 cut(s) 507, 890, 1122, 1619, 1689
AfaI GTAC 2 cut(s) 971, 1250
AfiI CCNNNNNNNGG 2 cut(s) 191, 730
AgeI ACCGGT 1 cut(s) 1574
AjiI CACGTC 2 cut(s) 807, 875
AjnI CCWGG 2 cut(s) 88, 867
Alw21I GWGCWC 2 cut(s) 540, 1622
Alw26I GTCTC 4 cut(s) 96, 342, 1326, 1764
AlwI GGATC 2 cut(s) 26, 1409
AlwNI CAGNNNCTG 2 cut(s) 443, 893
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 2 cut(s) 940, 1659
ApeKI GCWGC 4 cut(s) 422, 1232, 1382, 1453
ApoI RAATTY 5 cut(s) 293, 315, 1036, 1093, 1105
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
AsiGI ACCGGT 1 cut(s) 1574
AspS9I GGNCC 2 cut(s) 489, 1517
AsuC2I CCSGG 1 cut(s) 1284
AsuHPI GGTGA 4 cut(s) 473, 595, 1469, 1589
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 2 cut(s) 489, 1517
BaeGI GKGCMC 1 cut(s) 1395
BanII GRGCYC 3 cut(s) 18, 540, 1622
Bbv12I GWGCWC 2 cut(s) 540, 1622
BbvI GCAGC 4 cut(s) 434, 1244, 1369, 1465
BccI CCATC 5 cut(s) 221, 234, 728, 1117, 1166
BciT130I CCWGG 2 cut(s) 90, 869
BciVI GTATCC 1 cut(s) 381
BclI TGATCA 1 cut(s) 1432
BcnI CCSGG 1 cut(s) 1284
BcoDI GTCTC 4 cut(s) 96, 342, 1326, 1764
BfaI CTAG 1 cut(s) 1755
BfmI CTRYAG 2 cut(s) 97, 266
BfuI GTATCC 1 cut(s) 381
BisI GCNGC 4 cut(s) 423, 1233, 1383, 1454
BlpI GCTNAGC 1 cut(s) 1621
BlsI GCNGC 4 cut(s) 424, 1234, 1384, 1455
Bme1390I CCNGG 3 cut(s) 90, 869, 1284
Bme18I GGWCC 2 cut(s) 489, 1517
BmeT110I CYCGRG 1 cut(s) 215
BmgBI CACGTC 2 cut(s) 807, 875
BmgT120I GGNCC 2 cut(s) 489, 1517
BmiI GGNNCC 3 cut(s) 735, 1518, 1519
BmrFI CCNGG 3 cut(s) 90, 869, 1284
BmrI ACTGGG 2 cut(s) 961, 1165
BmsI GCATC 6 cut(s) 520, 594, 634, 673, 886, 1754
BmuI ACTGGG 2 cut(s) 961, 1165
BplI GAGNNNNNCTC 2 cut(s) 869, 901
BpmI CTGGAG 2 cut(s) 111, 1224
Bpu1102I GCTNAGC 1 cut(s) 1621
BpuEI CTTGAG 2 cut(s) 482, 1337
BpuMI CCSGG 1 cut(s) 1284
BsaI GGTCTC 1 cut(s) 1764
BsaJI CCNNGG 5 cut(s) 660, 868, 1522, 1672, 1722
BsaWI WCCGGW 1 cut(s) 1574
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 730
Bse118I RCCGGY 1 cut(s) 1574
Bse1I ACTGG 2 cut(s) 967, 1160
Bse3DI GCAATG 6 cut(s) 167, 590, 620, 639, 927, 1068
BseBI CCWGG 2 cut(s) 90, 869
BseDI CCNNGG 5 cut(s) 660, 868, 1522, 1672, 1722
BseGI GGATG 8 cut(s) 114, 245, 720, 771, 964, 1084, 1128, 1532
BseLI CCNNNNNNNGG 2 cut(s) 191, 730
BseMI GCAATG 6 cut(s) 167, 590, 620, 639, 927, 1068
BseMII CTCAG 5 cut(s) 170, 191, 900, 1276, 1635
BseNI ACTGG 2 cut(s) 967, 1160
BseSI GKGCMC 1 cut(s) 1395
BseXI GCAGC 4 cut(s) 434, 1244, 1369, 1465
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 2 cut(s) 942, 1661
BshTI ACCGGT 1 cut(s) 1574
BsiHKAI GWGCWC 2 cut(s) 540, 1622
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 2 cut(s) 1283, 1575
BslFI GGGAC 2 cut(s) 885, 1530
BslI CCNNNNNNNGG 2 cut(s) 191, 730
BsmAI GTCTC 4 cut(s) 96, 342, 1326, 1764
BsmFI GGGAC 2 cut(s) 885, 1530
BsmI GAATGC 1 cut(s) 1471
BsnI GGCC 2 cut(s) 942, 1661
Bso31I GGTCTC 1 cut(s) 1764
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 4 cut(s) 18, 540, 1395, 1622
Bsp143I GATC 7 cut(s) 31, 60, 631, 1401, 1423, 1432, 1692
Bsp1720I GCTNAGC 1 cut(s) 1621
Bsp19I CCATGG 1 cut(s) 1672
BspACI CCGC 3 cut(s) 37, 473, 1296
BspANI GGCC 2 cut(s) 942, 1661
BspCNI CTCAG 5 cut(s) 169, 190, 899, 1275, 1634
BspFNI CGCG 1 cut(s) 59
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 735, 1518, 1519
BspPI GGATC 2 cut(s) 26, 1409
BspTNI GGTCTC 1 cut(s) 1764
BsrDI GCAATG 6 cut(s) 167, 590, 620, 639, 927, 1068
BsrFI RCCGGY 1 cut(s) 1574
BsrI ACTGG 2 cut(s) 967, 1160
BssAI RCCGGY 1 cut(s) 1574
BssECI CCNNGG 5 cut(s) 660, 868, 1522, 1672, 1722
BssMI GATC 7 cut(s) 31, 60, 631, 1401, 1423, 1432, 1692
BssT1I CCWWGG 4 cut(s) 660, 1522, 1672, 1722
Bst2UI CCWGG 2 cut(s) 90, 869
Bst4CI ACNGT 2 cut(s) 514, 600
Bst6I CTCTTC 1 cut(s) 77
BstAPI GCANNNNNTGC 1 cut(s) 683
BstDEI CTNAG 7 cut(s) 156, 177, 886, 1245, 1262, 1460, 1621
BstDSI CCRYGG 1 cut(s) 1672
BstF5I GGATG 8 cut(s) 114, 245, 720, 771, 964, 1084, 1128, 1532
BstFNI CGCG 1 cut(s) 59
BstKTI GATC 7 cut(s) 34, 63, 634, 1404, 1426, 1435, 1695
BstMAI GTCTC 4 cut(s) 96, 342, 1326, 1764
BstMBI GATC 7 cut(s) 31, 60, 631, 1401, 1423, 1432, 1692
BstMWI GCNNNNNNNGC 5 cut(s) 683, 1000, 1166, 1175, 1241
BstNI CCWGG 2 cut(s) 90, 869
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 3 cut(s) 88, 867, 1282
BstSFI CTRYAG 2 cut(s) 97, 266
BstSLI GKGCMC 1 cut(s) 1395
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 4 cut(s) 434, 1244, 1369, 1465
BsuI GTATCC 1 cut(s) 381
BsuRI GGCC 2 cut(s) 942, 1661
BtgI CCRYGG 1 cut(s) 1672
BtgZI GCGATG 1 cut(s) 543
BtrI CACGTC 2 cut(s) 807, 875
BtsCI GGATG 8 cut(s) 114, 245, 720, 771, 964, 1084, 1128, 1532
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 2 cut(s) 128, 894
CaiI CAGNNNCTG 2 cut(s) 443, 893
CciI TCATGA 1 cut(s) 325
Cfr10I RCCGGY 1 cut(s) 1574
Cfr13I GGNCC 2 cut(s) 489, 1517
Csp6I GTAC 2 cut(s) 970, 1249
CspAI ACCGGT 1 cut(s) 1574
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 5 cut(s) 326, 334, 493, 901, 1673
CviQI GTAC 2 cut(s) 970, 1249
DdeI CTNAG 7 cut(s) 156, 177, 886, 1245, 1262, 1460, 1621
DpnI GATC 7 cut(s) 33, 62, 633, 1403, 1425, 1434, 1694
DpnII GATC 7 cut(s) 31, 60, 631, 1401, 1423, 1432, 1692
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
EciI GGCGGA 1 cut(s) 1311
Ecl136II GAGCTC 2 cut(s) 538, 1620
Eco130I CCWWGG 4 cut(s) 660, 1522, 1672, 1722
Eco147I AGGCCT 1 cut(s) 1661
Eco24I GRGCYC 3 cut(s) 18, 540, 1622
Eco31I GGTCTC 1 cut(s) 1764
Eco47I GGWCC 2 cut(s) 489, 1517
Eco53kI GAGCTC 2 cut(s) 538, 1620
Eco57I CTGAAG 5 cut(s) 507, 890, 1122, 1619, 1689
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 2 cut(s) 538, 1620
EcoO109I RGGNCCY 1 cut(s) 1517
EcoRI GAATTC 1 cut(s) 315
EcoRII CCWGG 2 cut(s) 88, 867
EcoT14I CCWWGG 4 cut(s) 660, 1522, 1672, 1722
EcoT38I GRGCYC 3 cut(s) 18, 540, 1622
ErhI CCWWGG 4 cut(s) 660, 1522, 1672, 1722
FaeI CATG 5 cut(s) 329, 337, 496, 904, 1676
FalI AAGNNNNNCTT 4 cut(s) 335, 367, 730, 762
FaqI GGGAC 2 cut(s) 885, 1530
FatI CATG 5 cut(s) 325, 333, 492, 900, 1672
FauI CCCGC 1 cut(s) 44
FbaI TGATCA 1 cut(s) 1432
Fnu4HI GCNGC 4 cut(s) 423, 1233, 1383, 1454
FokI GGATG 8 cut(s) 121, 252, 707, 758, 971, 1091, 1135, 1539
FriOI GRGCYC 3 cut(s) 18, 540, 1622
Fsp4HI GCNGC 4 cut(s) 423, 1233, 1383, 1454
FspBI CTAG 1 cut(s) 1755
GluI GCNGC 4 cut(s) 423, 1233, 1383, 1454
GsuI CTGGAG 2 cut(s) 111, 1224
HaeIII GGCC 2 cut(s) 942, 1661
HapII CCGG 2 cut(s) 1283, 1575
Hin1II CATG 5 cut(s) 329, 337, 496, 904, 1676
HincII GTYRAC 2 cut(s) 580, 1087
HindII GTYRAC 2 cut(s) 580, 1087
HindIII AAGCTT 1 cut(s) 1276
HpaII CCGG 2 cut(s) 1283, 1575
HphI GGTGA 4 cut(s) 473, 595, 1469, 1589
Hpy166II GTNNAC 7 cut(s) 349, 580, 603, 804, 1087, 1588, 1729
Hpy188I TCNGA 3 cut(s) 180, 818, 1265
Hpy188III TCNNGA 8 cut(s) 326, 433, 444, 547, 629, 1192, 1367, 1430
Hpy8I GTNNAC 7 cut(s) 349, 580, 603, 804, 1087, 1588, 1729
HpyAV CCTTC 4 cut(s) 1262, 1286, 1594, 1676
HpyCH4III ACNGT 2 cut(s) 514, 600
HpyCH4IV ACGT 5 cut(s) 806, 874, 1416, 1581, 1740
HpyF10VI GCNNNNNNNGC 5 cut(s) 683, 1000, 1166, 1175, 1241
HpyF3I CTNAG 7 cut(s) 156, 177, 886, 1245, 1262, 1460, 1621
HpySE526I ACGT 5 cut(s) 806, 874, 1416, 1581, 1740
Hsp92II CATG 5 cut(s) 329, 337, 496, 904, 1676
KflI GGGWCCC 1 cut(s) 1517
Ksp22I TGATCA 1 cut(s) 1432
Kzo9I GATC 7 cut(s) 31, 60, 631, 1401, 1423, 1432, 1692
LmnI GCTCC 4 cut(s) 739, 1175, 1450, 1617
Lsp1109I GCAGC 4 cut(s) 434, 1244, 1369, 1465
LweI GCATC 6 cut(s) 520, 594, 634, 673, 886, 1754
MaeI CTAG 1 cut(s) 1755
MaeII ACGT 5 cut(s) 806, 874, 1416, 1581, 1740
MaeIII GTNAC 6 cut(s) 287, 359, 820, 1529, 1577, 1593
MalI GATC 7 cut(s) 33, 62, 633, 1403, 1425, 1434, 1694
MboI GATC 7 cut(s) 31, 60, 631, 1401, 1423, 1432, 1692
MboII GAAGA 3 cut(s) 64, 1695, 1702
MhlI GDGCHC 4 cut(s) 18, 540, 1395, 1622
MluCI AATT 9 cut(s) 293, 315, 481, 1036, 1093, 1105, 1143, 1409, 1733
MlyI GAGTC 2 cut(s) 1328, 1634
MmeI TCCRAC 1 cut(s) 748
MseI TTAA 7 cut(s) 221, 233, 509, 1164, 1203, 1560, 1777
MspI CCGG 2 cut(s) 1283, 1575
MspR9I CCNGG 3 cut(s) 90, 869, 1284
Mva1269I GAATGC 1 cut(s) 1471
MvaI CCWGG 2 cut(s) 90, 869
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 5 cut(s) 683, 1000, 1166, 1175, 1241
NciI CCSGG 1 cut(s) 1284
NcoI CCATGG 1 cut(s) 1672
NdeII GATC 7 cut(s) 31, 60, 631, 1401, 1423, 1432, 1692
NlaIII CATG 5 cut(s) 329, 337, 496, 904, 1676
NlaIV GGNNCC 3 cut(s) 735, 1518, 1519
NmeAIII GCCGAG 1 cut(s) 559
NmuCI GTSAC 2 cut(s) 359, 1577
NspI RCATGY 1 cut(s) 337
PagI TCATGA 1 cut(s) 325
PceI AGGCCT 1 cut(s) 1661
PctI GAATGC 1 cut(s) 1471
PfeI GAWTC 8 cut(s) 52, 278, 476, 669, 962, 1486, 1494, 1715
PinAI ACCGGT 1 cut(s) 1574
PkrI GCNGC 4 cut(s) 424, 1234, 1384, 1455
PleI GAGTC 2 cut(s) 1327, 1634
PpsI GAGTC 2 cut(s) 1327, 1634
PpuMI RGGWCCY 1 cut(s) 1517
PsiI TTATAA 3 cut(s) 209, 452, 1152
Psp124BI GAGCTC 2 cut(s) 540, 1622
Psp5II RGGWCCY 1 cut(s) 1517
Psp6I CCWGG 2 cut(s) 88, 867
PspGI CCWGG 2 cut(s) 88, 867
PspN4I GGNNCC 3 cut(s) 735, 1518, 1519
PspPI GGNCC 2 cut(s) 489, 1517
PspPPI RGGWCCY 1 cut(s) 1517
PstNI CAGNNNCTG 2 cut(s) 443, 893
RsaI GTAC 2 cut(s) 971, 1250
RsaNI GTAC 2 cut(s) 970, 1249
SacI GAGCTC 2 cut(s) 540, 1622
SaqAI TTAA 7 cut(s) 221, 233, 509, 1164, 1203, 1560, 1777
SatI GCNGC 4 cut(s) 423, 1233, 1383, 1454
Sau3AI GATC 7 cut(s) 31, 60, 631, 1401, 1423, 1432, 1692
Sau96I GGNCC 2 cut(s) 489, 1517
SchI GAGTC 2 cut(s) 1328, 1634
ScrFI CCNGG 3 cut(s) 90, 869, 1284
SduI GDGCHC 4 cut(s) 18, 540, 1395, 1622
SfaNI GCATC 6 cut(s) 520, 594, 634, 673, 886, 1754
SfcI CTRYAG 2 cut(s) 97, 266
SinI GGWCC 2 cut(s) 489, 1517
SmlI CTYRAG 2 cut(s) 497, 1316
SmoI CTYRAG 2 cut(s) 497, 1316
Sse9I AATT 9 cut(s) 293, 315, 481, 1036, 1093, 1105, 1143, 1409, 1733
SseBI AGGCCT 1 cut(s) 1661
SsiI CCGC 3 cut(s) 37, 473, 1296
SspI AATATT 1 cut(s) 1333
SspMI CTAG 1 cut(s) 1755
SstI GAGCTC 2 cut(s) 540, 1622
StuI AGGCCT 1 cut(s) 1661
StyD4I CCNGG 3 cut(s) 88, 867, 1282
StyI CCWWGG 4 cut(s) 660, 1522, 1672, 1722
TaaI ACNGT 2 cut(s) 514, 600
TaiI ACGT 5 cut(s) 809, 877, 1419, 1584, 1743
TaqI TCGA 3 cut(s) 30, 313, 546
TasI AATT 9 cut(s) 293, 315, 481, 1036, 1093, 1105, 1143, 1409, 1733
TfiI GAWTC 8 cut(s) 52, 278, 476, 669, 962, 1486, 1494, 1715
Tru1I TTAA 7 cut(s) 221, 233, 509, 1164, 1203, 1560, 1777
Tru9I TTAA 7 cut(s) 221, 233, 509, 1164, 1203, 1560, 1777
TscAI CASTG 2 cut(s) 128, 894
TseFI GTSAC 2 cut(s) 359, 1577
TseI GCWGC 4 cut(s) 422, 1232, 1382, 1453
Tsp45I GTSAC 2 cut(s) 359, 1577
TspDTI ATGAA 3 cut(s) 857, 1242, 1305
TspRI CASTG 2 cut(s) 128, 894
VpaK11BI GGWCC 2 cut(s) 489, 1517
XapI RAATTY 5 cut(s) 293, 315, 1036, 1093, 1105
XceI RCATGY 1 cut(s) 337
XspI CTAG 1 cut(s) 1755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.