Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002751

Physical Location & Seq

Genomic Coordinates Forward (+)

77254766 .. 77256462

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G043950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGACGAATGCAGGCCAAAGCAATCTGCTGCTGCTGTTATGCACTTGTCTTTTTTCAGGGTTTGAAGTAATTACACTATCCTATGACTACACAGCCAGCATTGAGTGTTTGGAAAACCATCACAAACCCCAATATGGTGGAGGAATCATTGTAAACCCTGAACTAAATCACGACTTGAGAGGGTGGTCTACTTTGGGCAATGCAAAACTCCAACATAGAGATTCACAAGCAGGCAACAAATTTGCTATGGCTCGTAATAGAAACCAACCACATGCTGAAGTGAGTGGTGGTAGAGGTGTTCCAGTAACAGCTATTTTCAAGACAAGTGCTGGATCATTCATTCATGCTGGTGCTATTGTCGCAGAATCCGTGCTCAAGGGTGGCCTAACTGTGAATGCATCAAGCCCAGTTGAGCTTTATTTTGAGAGTAAGAACACATTGGTTGAGATTTGGGTTGATAGTGTCTCATTACAACCATTCAACAAAAAGGAATGGAAGTCTCATCATGATCAAAGCATTGAGAAGAACCGAAAGAGCAACGTGAGAATCCAAGCAATTGATGCAAAAGGAAACCCTCTACGGATTGCAACAATATCCATCCAACAAAAGGCTCCCATCTTCCCTTTCGGATGCGCTATGAACAAGAACATTCTCACCAATACTGCTTACCAAAACTGGTTCACTTCGAGGTTTGGAGTCACAACTTTTGAAGACGAAATGAAATGGTACAACACAGAACCTTCACAGGGACAAGAGGACTACTCAGTGGTTGATGCCCTGCTTCAGTTTGCTAAACAACAGAACATTGCAGTCAAAGGCCACAATGTGTTCTGGGATGATCCTCAGTACCATCTAAGTTGGGTCAAATCACTCGATAAACAACAACTGGCTCTAGCTGCTTCCAAGAGGTTAAATTCTGGTAAGTTGGGTGAAAATGCTTCAGCCATTTTATACAATTGGGCTACTAAAGCTGATGGAGCAACCACCTTGTTCATGAATGACTACAATACCATTGAGGAGAGCAAAGATGGAGCCTCCACCCCAGCTAAGTACCTTCAAAAGCTCAGAGATATACAAGGCTTTCCCGGTAACAACAACTTAAGGATGGAAATAGGACTTGAGTCTCATTTCAAGATTCCTAACATTCCTTACATAAGATCTCCAATTGATACTCTGGCTGTGCTGCAAACCTTCCAATCTGGATTACAGACATGGTACTTGGAGCAGATTCTGAGGGAGGTATGCACTCACCCTCAGATTCAAGGAATTGTTATTTGGGCTACATGGAAACCACAAGGATGTTACAAAATGTGTTTGACAGACAACAATTTCAAGAACTTACAAACTGGTGAAGTTGTTGACAAGCTACTAAATACTAATGGTGTCTTCAAGGCCTGCCTTCCCCATGGAGATTATGAAGTGAAAATCACTTATCTGGAATCTGTGAAAGTTTCTACCGGTATAGTTCAGGGATTGAGTGTGGCAGCAAGTTCCACTGCATACCAACAACCATTGCTGGTCCAACTTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

511

Amino Acids

56.84

Weight (kDa)

8.0

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_10	PF00331	207 - 295	1.7e-15	Glycosyl hydrolase family 10

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33830 AT4G33840 AT4G33860
fragaria_vesca	FvH4_2g03792 FvH4_2g03793 FvH4_2g03793 FvH4_2g03840 FvH4_3g40060
malus_domestica	MD05G1100700.v1.1 MD10G1105900.v1.1 MD10G1106500.v1.1
prunus_persica	Prupe.8G145100_v2.0.a1 Prupe.8G145200_v2.0.a1 Prupe.8G145300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072231 RchiOBHm_Chr6g0252841 RchiOBHm_Chr6g0252851
rosa_laevigata	RLG00000015059 RLG00000015061
rosa_multiflora	Rmu_co8129022.1_g000001 Rmu_sc0000714.1_g000002 Rmu_sc0000829.1_g000017 Rmu_sc0000829.1_g000029 Rmu_sc0028322.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212390
rosa_rugosa	Rorug05G0417000 Rorug05G0539100
rosa_samantha	Rh5DG505200 Rh6AG055100 Rh6BG049200 Rh6CG047900 Rh6CG048000 Rh6CG048100 Rh6DG043400 Rh6DG043600 Rh6DG043700
rosa_wichuraiana	Rw5G043950 Rw6G004970 Rw6G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	188
AclWI	GGATC	2 cut(s)	340, 833
AcsI	RAATTY	2 cut(s)	239, 913
AcuI	CTGAAG	3 cut(s)	297, 767, 924
AdeI	CACNNNGTG	1 cut(s)	826
AfaI	GTAC	4 cut(s)	728, 848, 1052, 1217
AfiI	CCNNNNNNNGG	3 cut(s)	134, 607, 746
AflII	CTTAAG	1 cut(s)	1099
AgeI	ACCGGT	1 cut(s)	1457
AgsI	TTSAA	9 cut(s)	65, 319, 481, 710, 1058, 1132, 1262, 1333, 1390
AjuI	GAANNNNNNNTTGG	2 cut(s)	1258, 1290
AluBI	AGCT	7 cut(s)	311, 415, 896, 971, 1046, 1063, 1366
AluI	AGCT	7 cut(s)	311, 415, 896, 971, 1046, 1063, 1366
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	3 cut(s)	469, 504, 1128
AlwI	GGATC	2 cut(s)	340, 833
AlwNI	CAGNNNCTG	1 cut(s)	1231
AoxI	GGCC	4 cut(s)	13, 382, 817, 1392
ApeKI	GCWGC	6 cut(s)	28, 31, 896, 1183, 1484, 1529
ApoI	RAATTY	2 cut(s)	239, 913
AsiGI	ACCGGT	1 cut(s)	1457
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	1 cut(s)	1519
AsuC2I	CCSGG	1 cut(s)	1086
AsuHPI	GGTGA	4 cut(s)	646, 941, 1241, 1361
AvaII	GGWCC	1 cut(s)	1519
BbsI	GAAGAC	2 cut(s)	717, 1378
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	6 cut(s)	15, 18, 883, 1170, 1496, 1516
BccI	CCATC	7 cut(s)	126, 605, 623, 858, 968, 1022, 1099
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	1086
BcoDI	GTCTC	3 cut(s)	469, 504, 1128
BfaI	CTAG	1 cut(s)	893
BfrI	CTTAAG	1 cut(s)	1099
BglII	AGATCT	1 cut(s)	1157
BisI	GCNGC	6 cut(s)	29, 32, 897, 1184, 1485, 1530
BlsI	GCNGC	6 cut(s)	30, 33, 898, 1185, 1486, 1531
Bme1390I	CCNGG	1 cut(s)	1086
Bme18I	GGWCC	1 cut(s)	1519
BmgT120I	GGNCC	1 cut(s)	1519
BmiI	GGNNCC	2 cut(s)	612, 1033
BmrFI	CCNGG	1 cut(s)	1086
BmrI	ACTGGG	1 cut(s)	401
BmsI	GCATC	4 cut(s)	407, 550, 620, 763
BmuI	ACTGGG	1 cut(s)	401
BoxI	GACNNNNGTC	1 cut(s)	1120
BpiI	GAAGAC	2 cut(s)	717, 1378
BplI	GAGNNNNNCTC	2 cut(s)	746, 778
BpuEI	CTTGAG	3 cut(s)	196, 359, 1139
BpuMI	CCSGG	1 cut(s)	1086
BsaJI	CCNNGG	1 cut(s)	1405
BsaWI	WCCGGW	1 cut(s)	1457
Bsc4I	CCNNNNNNNGG	3 cut(s)	134, 607, 746
Bse118I	RCCGGY	1 cut(s)	1457
Bse1I	ACTGG	5 cut(s)	302, 407, 680, 891, 1351
Bse3DI	GCAATG	3 cut(s)	205, 804, 1511
BseDI	CCNNGG	1 cut(s)	1405
BseGI	GGATG	5 cut(s)	597, 635, 841, 1110, 1304
BseLI	CCNNNNNNNGG	3 cut(s)	134, 607, 746
BseMI	GCAATG	3 cut(s)	205, 804, 1511
BseMII	CTCAG	5 cut(s)	777, 857, 1078, 1223, 1268
BseNI	ACTGG	5 cut(s)	302, 407, 680, 891, 1351
BseRI	GAGGAG	1 cut(s)	1031
BseXI	GCAGC	6 cut(s)	15, 18, 883, 1170, 1496, 1516
BseYI	CCCAGC	1 cut(s)	1042
BshFI	GGCC	4 cut(s)	15, 384, 819, 1394
BshTI	ACCGGT	1 cut(s)	1457
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	1086, 1458
BslFI	GGGAC	1 cut(s)	762
BslI	CCNNNNNNNGG	3 cut(s)	134, 607, 746
BsmAI	GTCTC	3 cut(s)	469, 504, 1128
BsmFI	GGGAC	1 cut(s)	762
BsmI	GAATGC	2 cut(s)	13, 400
BsnI	GGCC	4 cut(s)	15, 384, 819, 1394
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	332, 508, 838, 1157
Bsp19I	CCATGG	1 cut(s)	1405
BspANI	GGCC	4 cut(s)	15, 384, 819, 1394
BspCNI	CTCAG	5 cut(s)	776, 856, 1077, 1224, 1267
BspHI	TCATGA	2 cut(s)	505, 993
BspLI	GGNNCC	2 cut(s)	612, 1033
BspPI	GGATC	2 cut(s)	340, 833
BspTI	CTTAAG	1 cut(s)	1099
BsrDI	GCAATG	3 cut(s)	205, 804, 1511
BsrFI	RCCGGY	1 cut(s)	1457
BsrI	ACTGG	5 cut(s)	302, 407, 680, 891, 1351
BssAI	RCCGGY	1 cut(s)	1457
BssECI	CCNNGG	1 cut(s)	1405
BssMI	GATC	4 cut(s)	332, 508, 838, 1157
BssT1I	CCWWGG	1 cut(s)	1405
Bst4CI	ACNGT	1 cut(s)	391
BstAFI	CTTAAG	1 cut(s)	1099
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	4 cut(s)	13, 97, 232, 1396
BstDEI	CTNAG	7 cut(s)	763, 843, 854, 1047, 1064, 1232, 1254
BstDSI	CCRYGG	1 cut(s)	1405
BstF5I	GGATG	5 cut(s)	597, 635, 841, 1110, 1304
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	4 cut(s)	335, 511, 841, 1160
BstMAI	GTCTC	3 cut(s)	469, 504, 1128
BstMBI	GATC	4 cut(s)	332, 508, 838, 1157
BstMWI	GCNNNNNNNGC	5 cut(s)	359, 560, 896, 968, 977
BstNSI	RCATGY	1 cut(s)	275
BstPAI	GACNNNNGTC	1 cut(s)	1120
BstSCI	CCNGG	1 cut(s)	1084
BstV1I	GCAGC	6 cut(s)	15, 18, 883, 1170, 1496, 1516
BstV2I	GAAGAC	2 cut(s)	717, 1378
BstX2I	RGATCY	1 cut(s)	1157
BstXI	CCANNNNNNTGG	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	1157
BsuRI	GGCC	4 cut(s)	15, 384, 819, 1394
BtgI	CCRYGG	1 cut(s)	1405
BtsCI	GGATG	5 cut(s)	597, 635, 841, 1110, 1304
BtsI	GCAGTG	1 cut(s)	1494
BtsIMutI	CAGTG	2 cut(s)	771, 1494
Cac8I	GCNNGC	4 cut(s)	13, 97, 232, 1396
CaiI	CAGNNNCTG	1 cut(s)	1231
CciI	TCATGA	2 cut(s)	505, 993
CfoI	GCGC	1 cut(s)	635
Cfr10I	RCCGGY	1 cut(s)	1457
Cfr13I	GGNCC	1 cut(s)	1519
Csp6I	GTAC	4 cut(s)	727, 847, 1051, 1216
CspAI	ACCGGT	1 cut(s)	1457
CviAII	CATG	8 cut(s)	272, 344, 506, 994, 1212, 1284, 1406, 1533
CviQI	GTAC	4 cut(s)	727, 847, 1051, 1216
DdeI	CTNAG	7 cut(s)	763, 843, 854, 1047, 1064, 1232, 1254
DpnI	GATC	4 cut(s)	334, 510, 840, 1159
DpnII	GATC	4 cut(s)	332, 508, 838, 1157
DraIII	CACNNNGTG	1 cut(s)	826
Eco130I	CCWWGG	1 cut(s)	1405
Eco147I	AGGCCT	1 cut(s)	1394
Eco47I	GGWCC	1 cut(s)	1519
Eco57I	CTGAAG	3 cut(s)	297, 767, 924
EcoT14I	CCWWGG	1 cut(s)	1405
EcoT22I	ATGCAT	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	1405
FaeI	CATG	8 cut(s)	275, 347, 509, 997, 1215, 1287, 1409, 1536
FaqI	GGGAC	1 cut(s)	762
FatI	CATG	8 cut(s)	271, 343, 505, 993, 1211, 1283, 1405, 1532
FbaI	TGATCA	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	6 cut(s)	29, 32, 897, 1184, 1485, 1530
FokI	GGATG	5 cut(s)	584, 642, 848, 1117, 1311
Fsp4HI	GCNGC	6 cut(s)	29, 32, 897, 1184, 1485, 1530
FspBI	CTAG	1 cut(s)	893
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	6 cut(s)	29, 32, 897, 1184, 1485, 1530
GsaI	CCCAGC	1 cut(s)	1046
HaeIII	GGCC	4 cut(s)	15, 384, 819, 1394
HapII	CCGG	2 cut(s)	1086, 1458
HhaI	GCGC	1 cut(s)	635
Hin1II	CATG	8 cut(s)	275, 347, 509, 997, 1215, 1287, 1409, 1536
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HincII	GTYRAC	1 cut(s)	1360
HindII	GTYRAC	1 cut(s)	1360
HpaII	CCGG	2 cut(s)	1086, 1458
HphI	GGTGA	4 cut(s)	646, 941, 1241, 1361
Hpy166II	GTNNAC	4 cut(s)	154, 189, 681, 1360
Hpy188I	TCNGA	4 cut(s)	629, 1067, 1233, 1257
Hpy188III	TCNNGA	8 cut(s)	170, 319, 506, 994, 1132, 1200, 1333, 1436
Hpy8I	GTNNAC	4 cut(s)	154, 189, 681, 1360
HpyAV	CCTTC	4 cut(s)	750, 1064, 1201, 1409
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	540
HpyF10VI	GCNNNNNNNGC	5 cut(s)	359, 560, 896, 968, 977
HpyF3I	CTNAG	7 cut(s)	763, 843, 854, 1047, 1064, 1232, 1254
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	8 cut(s)	275, 347, 509, 997, 1215, 1287, 1409, 1536
HspAI	GCGC	1 cut(s)	633
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	4 cut(s)	332, 508, 838, 1157
LmnI	GCTCC	4 cut(s)	616, 977, 1031, 1222
Lsp1109I	GCAGC	6 cut(s)	15, 18, 883, 1170, 1496, 1516
LweI	GCATC	4 cut(s)	407, 550, 620, 763
MaeI	CTAG	1 cut(s)	893
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	4 cut(s)	304, 697, 1088, 1301
MalI	GATC	4 cut(s)	334, 510, 840, 1159
MboI	GATC	4 cut(s)	332, 508, 838, 1157
MboII	GAAGA	4 cut(s)	535, 610, 722, 1378
MfeI	CAATTG	3 cut(s)	555, 955, 1164
MflI	RGATCY	1 cut(s)	1157
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	8 cut(s)	69, 239, 555, 913, 955, 1164, 1266, 1327
MlyI	GAGTC	2 cut(s)	705, 1130
MmeI	TCCRAC	2 cut(s)	235, 625
Mph1103I	ATGCAT	1 cut(s)	400
MseI	TTAA	2 cut(s)	911, 1100
MslI	CAYNNNNRTG	2 cut(s)	348, 1297
MspCI	CTTAAG	1 cut(s)	1099
MspI	CCGG	2 cut(s)	1086, 1458
MspR9I	CCNGG	1 cut(s)	1086
MunI	CAATTG	3 cut(s)	555, 955, 1164
Mva1269I	GAATGC	2 cut(s)	13, 400
MwoI	GCNNNNNNNGC	5 cut(s)	359, 560, 896, 968, 977
NciI	CCSGG	1 cut(s)	1086
NcoI	CCATGG	1 cut(s)	1405
NdeII	GATC	4 cut(s)	332, 508, 838, 1157
NlaIII	CATG	8 cut(s)	275, 347, 509, 997, 1215, 1287, 1409, 1536
NlaIV	GGNNCC	2 cut(s)	612, 1033
NmuCI	GTSAC	1 cut(s)	697
NsiI	ATGCAT	1 cut(s)	400
NspI	RCATGY	1 cut(s)	275
PagI	TCATGA	2 cut(s)	505, 993
PceI	AGGCCT	1 cut(s)	1394
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PctI	GAATGC	2 cut(s)	13, 400
PfeI	GAWTC	8 cut(s)	144, 221, 365, 546, 1135, 1228, 1258, 1439
PinAI	ACCGGT	1 cut(s)	1457
PkrI	GCNGC	6 cut(s)	30, 33, 898, 1185, 1486, 1531
PleI	GAGTC	2 cut(s)	704, 1129
PpsI	GAGTC	2 cut(s)	704, 1129
PshAI	GACNNNNGTC	1 cut(s)	1120
PspFI	CCCAGC	1 cut(s)	1042
PspN4I	GGNNCC	2 cut(s)	612, 1033
PspPI	GGNCC	1 cut(s)	1519
PstNI	CAGNNNCTG	1 cut(s)	1231
PsuI	RGATCY	1 cut(s)	1157
RsaI	GTAC	4 cut(s)	728, 848, 1052, 1217
RsaNI	GTAC	4 cut(s)	727, 847, 1051, 1216
RseI	CAYNNNNRTG	2 cut(s)	348, 1297
SaqAI	TTAA	2 cut(s)	911, 1100
SatI	GCNGC	6 cut(s)	29, 32, 897, 1184, 1485, 1530
Sau3AI	GATC	4 cut(s)	332, 508, 838, 1157
Sau96I	GGNCC	1 cut(s)	1519
SchI	GAGTC	2 cut(s)	705, 1130
ScrFI	CCNGG	1 cut(s)	1086
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	4 cut(s)	407, 550, 620, 763
SinI	GGWCC	1 cut(s)	1519
SmiMI	CAYNNNNRTG	2 cut(s)	348, 1297
SmlI	CTYRAG	4 cut(s)	175, 374, 1099, 1118
SmoI	CTYRAG	4 cut(s)	175, 374, 1099, 1118
Sse9I	AATT	8 cut(s)	69, 239, 555, 913, 955, 1164, 1266, 1327
SseBI	AGGCCT	1 cut(s)	1394
SspMI	CTAG	1 cut(s)	893
StuI	AGGCCT	1 cut(s)	1394
StyD4I	CCNGG	1 cut(s)	1084
StyI	CCWWGG	1 cut(s)	1405
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	2 cut(s)	686, 873
TasI	AATT	8 cut(s)	69, 239, 555, 913, 955, 1164, 1266, 1327
TfiI	GAWTC	8 cut(s)	144, 221, 365, 546, 1135, 1228, 1258, 1439
Tru1I	TTAA	2 cut(s)	911, 1100
Tru9I	TTAA	2 cut(s)	911, 1100
TscAI	CASTG	2 cut(s)	771, 1501
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	6 cut(s)	28, 31, 896, 1183, 1484, 1529
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	7 cut(s)	328, 332, 653, 734, 982, 1010, 1431
TspGWI	ACGGA	2 cut(s)	358, 595
TspRI	CASTG	2 cut(s)	771, 1501
Vha464I	CTTAAG	1 cut(s)	1099
VpaK11BI	GGWCC	1 cut(s)	1519
XapI	RAATTY	2 cut(s)	239, 913
XceI	RCATGY	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	188
XspI	CTAG	1 cut(s)	893
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.