FvH4_2g03792

Endo-1,4-beta-xylanase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
3031303 .. 3033890
2588 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03792.t1

Sequence Viewer

Length: 1743 bp
ATGAAGATTCACGCAGGGAACATCATTCTTCTCCTGCTATGCCCTGTTTTGGTTGCAGGGACGTTGGAAGTAAATGGGTTATCCTATGATTACACAGCCAGTACTGAGTGTTTGGCCAACCCTCTGAAACCACAGTATGGTGGAGGGATCATTGTAAACCCGGAATTAAATGAAGGCTTGAAAGGGTGGTCGACTTTCGGCAATGCAACAATGGAACATCGGAAATCCGAAAACAATAGTTTCATAGTGGCTCATAGCAGAAATCAACCGCATGACAGTATTTTTCAGAACGTTCACTTGGAAATTGACAAGCTTTACACATTTTCTGCTTGGGTTCAAGTGAGCAATGGTAGTGATGTTCCGGTAACTGCTGTTTTTAACACACCTACTGGATTCGTTCATGCTGGCGTAACTATTGCAGAATCTAATTGTTGGACCATGCTCAAGGGTGGCCTAACCGTGAATGCCTCAGGCCCTGCCGAGCTCTATTTTGAGAGCGAAAACACAATGTCCGAAATTTGGGTTGATAGTATCTCTTTACAACCTTTCACCCAGGAGAAGTGGAAGTCTCATCAAGATCAAAGCATTGAAAAGATTCGTAAGAGCAAGGTGAAAATCCAAGCAGTTGATGCGCAAGGAAACCCTCTACCAAATGCTACAATCTCTATCGAACAAAAGGGAGGAAGTTTCCCGTTTGGCTGTGCTATGGACAAACTCATTCTCTCCAACACTGCCTACCAAAATTGGTTCACATCAAGATTCAGACTGACAACATTTGAAAACGAAATGAAATGGTATAGCACAGAAACTTCCGAAGGACATCAGGACTACTCGGTTCCTGATGCCATGCTTCGGTTTGCAAAGCAGCACAACATTGCAGTAAGAGGTCACAATGTTTTCTGGGATGATCCACAGCATCAACAAGGCTGGCTCAAATCACTCCCTACGAAACGACTTGCCACAGACGCATATTGGAGAGCACGTAATATTGTGAAGAGATACAAGGGCCAACTCATTGCCTGGGATGTTGTCAACGAAAACTTGCATTTTAATTTCTTTGAAAGTAGGATGGGTCCGTTAGCTTCAGGCATTATGTATAACTGGGCTCTTAAAGCTGATGGAGCAACTCCTTTGTTCTTGAATGAGTACAATACCATTGAGGATAGCAGAGATTGGAAAGCCTCGCCGAAAGCCTACATTAACAGACTCAGAGGGATTCAAAGGGTTTTGGATAATTACAAAGGTCGGTTTGGGATCGGACTCGAGTCACATTTTGTTACTCCAAACATTCCTTACATAAGAGCTTCTATTGATTATCTTGCCACTGCAAAGGTGCCCATTTGGATTACAGAATTGGACGTGCAAAGTGGCCCTAATCAGGCATTGTACTTGGAGCAGATTCTAAGGGAGTTACATTCTCACCCACAAGTTCAAGGAATTGTGATTTGGTCTGCATGGCAACCTCAAGGATGTTACAGAATGTGCTTAACCGATAACAATTTCAAGAACTTGGCCACTGGTAATGTTGTGGACAAGTTACTACATGAATGGGGTTTGCGGTCTTTCGAGTCGACTTCTGCCGCAACAGACGCTAATGGTTTCTTTGAGGCCTCCCTCTTCCATGGGGATTATGAAGTTACCATCACTCACCCCTCGGTCACAAATTCCTCTCTGGTTCACAGATTCAATGTTGCACCAAACTCTGAGTCGCATGAACCATTGCAGCTCAAACTCTTTGCTTGA

Protein Analysis

581

Amino Acids

65.41

Weight (kDa)

6.29

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBM_4_9 PF02018 50 - 166 5.5e-08 Carbohydrate binding domain
Glyco_hydro_10 PF00331 230 - 485 1.2e-37 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 633
AccB1I GGYRCC 1 cut(s) 1333
AccB7I CCANNNNNTGG 1 cut(s) 137
AccI GTMKAC 2 cut(s) 191, 1571
AciI CCGC 3 cut(s) 269, 1558, 1581
AclI AACGTT 1 cut(s) 291
AclWI GGATC 3 cut(s) 155, 902, 1262
AcoI YGGCCR 2 cut(s) 114, 1512
AcsI RAATTY 2 cut(s) 516, 1663
AcuI CTGAAG 1 cut(s) 1068
AfaI GTAC 3 cut(s) 103, 1148, 1388
AfiI CCNNNNNNNGG 5 cut(s) 49, 137, 519, 852, 1378
AjiI CACGTC 1 cut(s) 1360
AjnI CCWGG 2 cut(s) 552, 1019
AjuI GAANNNNNNNTTGG 4 cut(s) 281, 313, 1429, 1461
AluBI AGCT 6 cut(s) 313, 484, 1082, 1115, 1304, 1726
AluI AGCT 6 cut(s) 313, 484, 1082, 1115, 1304, 1726
Alw21I GWGCWC 2 cut(s) 486, 982
Alw26I GTCTC 1 cut(s) 573
AlwI GGATC 3 cut(s) 155, 902, 1262
AlwNI CAGNNNCTG 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 1262
AoxI GGCC 7 cut(s) 114, 451, 472, 1006, 1369, 1512, 1608
ApeKI GCWGC 2 cut(s) 865, 1723
ApoI RAATTY 2 cut(s) 516, 1663
ArsI GACNNNNNNTTYG 2 cut(s) 1691, 1723
Asp700I GAANNNNTTC 1 cut(s) 594
AspLEI GCGC 1 cut(s) 634
AspS9I GGNCC 5 cut(s) 435, 473, 1006, 1073, 1370
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 4 cut(s) 541, 622, 1412, 1640
AvaI CYCGRG 1 cut(s) 1262
AvaII GGWCC 2 cut(s) 435, 1073
AxyI CCTNAGG 1 cut(s) 469
BaeGI GKGCMC 1 cut(s) 1338
BalI TGGCCA 2 cut(s) 116, 1514
BanI GGYRCC 1 cut(s) 1333
BanII GRGCYC 2 cut(s) 486, 1108
Bbv12I GWGCWC 2 cut(s) 486, 982
BbvI GCAGC 2 cut(s) 877, 1735
BccI CCATC 3 cut(s) 1063, 1112, 1649
BciT130I CCWGG 2 cut(s) 554, 1021
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 573
BisI GCNGC 3 cut(s) 866, 1581, 1724
BlsI GCNGC 3 cut(s) 867, 1582, 1725
BmcAI AGTACT 1 cut(s) 103
Bme1390I CCNGG 3 cut(s) 161, 554, 1021
Bme18I GGWCC 2 cut(s) 435, 1073
BmeT110I CYCGRG 1 cut(s) 1262
BmgBI CACGTC 1 cut(s) 1360
BmgT120I GGNCC 5 cut(s) 435, 473, 1006, 1073, 1370
BmiI GGNNCC 3 cut(s) 837, 1074, 1335
BmrFI CCNGG 3 cut(s) 161, 554, 1021
BmrI ACTGGG 1 cut(s) 1111
BmsI GCATC 3 cut(s) 619, 832, 925
BmuI ACTGGG 1 cut(s) 1111
BoxI GACNNNNGTC 1 cut(s) 1264
BpuEI CTTGAG 2 cut(s) 428, 1449
BpuMI CCSGG 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 983
BsaJI CCNNGG 4 cut(s) 552, 1020, 1621, 1653
BsaWI WCCGGW 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 967, 997
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 137, 519, 852, 1378
Bse1I ACTGG 4 cut(s) 99, 394, 1106, 1522
Bse21I CCTNAGG 1 cut(s) 469
Bse3DI GCAATG 5 cut(s) 208, 352, 873, 1014, 1718
BseBI CCWGG 2 cut(s) 554, 1021
BseDI CCNNGG 4 cut(s) 552, 1020, 1621, 1653
BseGI GGATG 4 cut(s) 910, 1030, 1074, 1475
BseLI CCNNNNNNNGG 5 cut(s) 49, 137, 519, 852, 1378
BseMI GCAATG 5 cut(s) 208, 352, 873, 1014, 1718
BseMII CTCAG 4 cut(s) 96, 483, 1222, 1695
BseNI ACTGG 4 cut(s) 99, 394, 1106, 1522
BseSI GKGCMC 1 cut(s) 1338
BseXI GCAGC 2 cut(s) 877, 1735
BshFI GGCC 7 cut(s) 116, 453, 474, 1008, 1371, 1514, 1610
BshNI GGYRCC 1 cut(s) 1333
BsiHKAI GWGCWC 2 cut(s) 486, 982
BsiHKCI CYCGRG 1 cut(s) 1262
BsiSI CCGG 2 cut(s) 161, 362
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 5 cut(s) 49, 137, 519, 852, 1378
BsmAI GTCTC 1 cut(s) 573
BsmFI GGGAC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 7 cut(s) 116, 453, 474, 1008, 1371, 1514, 1610
BsoBI CYCGRG 1 cut(s) 1262
Bsp1286I GDGCHC 4 cut(s) 486, 982, 1108, 1338
Bsp143I GATC 4 cut(s) 147, 577, 907, 1254
Bsp19I CCATGG 1 cut(s) 1621
BspACI CCGC 3 cut(s) 269, 1558, 1581
BspANI GGCC 7 cut(s) 116, 453, 474, 1008, 1371, 1514, 1610
BspCNI CTCAG 4 cut(s) 97, 482, 1221, 1696
BspLI GGNNCC 3 cut(s) 837, 1074, 1335
BspPI GGATC 3 cut(s) 155, 902, 1262
BspT107I GGYRCC 1 cut(s) 1333
BsrDI GCAATG 5 cut(s) 208, 352, 873, 1014, 1718
BsrI ACTGG 4 cut(s) 99, 394, 1106, 1522
BssECI CCNNGG 4 cut(s) 552, 1020, 1621, 1653
BssMI GATC 4 cut(s) 147, 577, 907, 1254
BssT1I CCWWGG 1 cut(s) 1621
Bst2UI CCWGG 2 cut(s) 554, 1021
Bst4CI ACNGT 3 cut(s) 135, 278, 460
Bst6I CTCTTC 2 cut(s) 989, 1622
BstAPI GCANNNNNTGC 1 cut(s) 629
BstBAI YACGTR 1 cut(s) 983
BstC8I GCNNGC 2 cut(s) 406, 929
BstDEI CTNAG 5 cut(s) 105, 469, 1208, 1403, 1704
BstDSI CCRYGG 1 cut(s) 1621
BstF5I GGATG 4 cut(s) 910, 1030, 1074, 1475
BstHHI GCGC 1 cut(s) 634
BstKTI GATC 4 cut(s) 150, 580, 910, 1257
BstMAI GTCTC 1 cut(s) 573
BstMBI GATC 4 cut(s) 147, 577, 907, 1254
BstMWI GCNNNNNNNGC 5 cut(s) 629, 965, 1112, 1121, 1589
BstNI CCWGG 2 cut(s) 554, 1021
BstPAI GACNNNNGTC 1 cut(s) 1264
BstSCI CCNGG 3 cut(s) 159, 552, 1019
BstSLI GKGCMC 1 cut(s) 1338
BstV1I GCAGC 2 cut(s) 877, 1735
Bsu36I CCTNAGG 1 cut(s) 469
BsuRI GGCC 7 cut(s) 116, 453, 474, 1008, 1371, 1514, 1610
BtgI CCRYGG 1 cut(s) 1621
BtrI CACGTC 1 cut(s) 1360
BtsCI GGATG 4 cut(s) 910, 1030, 1074, 1475
BtsI GCAGTG 2 cut(s) 729, 1323
BtsIMutI CAGTG 3 cut(s) 729, 1323, 1515
Cac8I GCNNGC 2 cut(s) 406, 929
CaiI CAGNNNCTG 1 cut(s) 476
CfoI GCGC 1 cut(s) 634
Cfr13I GGNCC 5 cut(s) 435, 473, 1006, 1073, 1370
CseI GACGC 2 cut(s) 974, 1598
Csp6I GTAC 3 cut(s) 102, 1147, 1387
CviAII CATG 8 cut(s) 272, 401, 439, 847, 1455, 1544, 1622, 1712
CviQI GTAC 3 cut(s) 102, 1147, 1387
DdeI CTNAG 5 cut(s) 105, 469, 1208, 1403, 1704
DpnI GATC 4 cut(s) 149, 579, 909, 1256
DpnII GATC 4 cut(s) 147, 577, 907, 1254
EaeI YGGCCR 2 cut(s) 114, 1512
Eam1104I CTCTTC 2 cut(s) 989, 1622
EarI CTCTTC 2 cut(s) 989, 1622
Ecl136II GAGCTC 1 cut(s) 484
Eco130I CCWWGG 1 cut(s) 1621
Eco147I AGGCCT 1 cut(s) 1610
Eco24I GRGCYC 2 cut(s) 486, 1108
Eco47I GGWCC 2 cut(s) 435, 1073
Eco53kI GAGCTC 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 1068
Eco81I CCTNAGG 1 cut(s) 469
Eco88I CYCGRG 1 cut(s) 1262
EcoICRI GAGCTC 1 cut(s) 484
EcoO109I RGGNCCY 1 cut(s) 473
EcoRII CCWGG 2 cut(s) 552, 1019
EcoT14I CCWWGG 1 cut(s) 1621
EcoT38I GRGCYC 2 cut(s) 486, 1108
ErhI CCWWGG 1 cut(s) 1621
FaeI CATG 8 cut(s) 275, 404, 442, 850, 1458, 1547, 1625, 1715
FaqI GGGAC 1 cut(s) 73
FatI CATG 8 cut(s) 271, 400, 438, 846, 1454, 1543, 1621, 1711
FblI GTMKAC 2 cut(s) 191, 1571
Fnu4HI GCNGC 3 cut(s) 866, 1581, 1724
FokI GGATG 4 cut(s) 917, 1037, 1081, 1482
FriOI GRGCYC 2 cut(s) 486, 1108
Fsp4HI GCNGC 3 cut(s) 866, 1581, 1724
FspI TGCGCA 1 cut(s) 633
GlaI GCGC 1 cut(s) 633
GluI GCNGC 3 cut(s) 866, 1581, 1724
HaeIII GGCC 7 cut(s) 116, 453, 474, 1008, 1371, 1514, 1610
HapII CCGG 2 cut(s) 161, 362
HgaI GACGC 2 cut(s) 974, 1598
HhaI GCGC 1 cut(s) 634
Hin1II CATG 8 cut(s) 275, 404, 442, 850, 1458, 1547, 1625, 1715
Hin6I GCGC 1 cut(s) 632
HinP1I GCGC 1 cut(s) 632
HincII GTYRAC 3 cut(s) 192, 1033, 1572
HindII GTYRAC 3 cut(s) 192, 1033, 1572
HindIII AAGCTT 1 cut(s) 311
HpaII CCGG 2 cut(s) 161, 362
HphI GGTGA 4 cut(s) 541, 622, 1412, 1640
Hpy166II GTNNAC 8 cut(s) 157, 192, 295, 750, 1033, 1531, 1572, 1678
Hpy188III TCNNGA 6 cut(s) 575, 756, 824, 839, 1138, 1504
Hpy8I GTNNAC 8 cut(s) 157, 192, 295, 750, 1033, 1531, 1572, 1678
HpyAV CCTTC 2 cut(s) 167, 809
HpyCH4III ACNGT 3 cut(s) 135, 278, 460
HpyCH4IV ACGT 4 cut(s) 62, 291, 982, 1359
HpyF10VI GCNNNNNNNGC 5 cut(s) 629, 965, 1112, 1121, 1589
HpyF3I CTNAG 5 cut(s) 105, 469, 1208, 1403, 1704
HpySE526I ACGT 4 cut(s) 62, 291, 982, 1359
Hsp92II CATG 8 cut(s) 275, 404, 442, 850, 1458, 1547, 1625, 1715
HspAI GCGC 1 cut(s) 632
Kzo9I GATC 4 cut(s) 147, 577, 907, 1254
LmnI GCTCC 2 cut(s) 1121, 1393
Lsp1109I GCAGC 2 cut(s) 877, 1735
LweI GCATC 3 cut(s) 619, 832, 925
MaeII ACGT 4 cut(s) 62, 291, 982, 1359
MalI GATC 4 cut(s) 149, 579, 909, 1256
MboI GATC 4 cut(s) 147, 577, 907, 1254
MboII GAAGA 4 cut(s) 16, 20, 1006, 1609
MhlI GDGCHC 4 cut(s) 486, 982, 1108, 1338
MlsI TGGCCA 2 cut(s) 116, 1514
MluNI TGGCCA 2 cut(s) 116, 1514
MlyI GAGTC 5 cut(s) 1200, 1254, 1274, 1577, 1715
MmeI TCCRAC 3 cut(s) 45, 413, 750
Mox20I TGGCCA 2 cut(s) 116, 1514
MroXI GAANNNNTTC 1 cut(s) 594
MscI TGGCCA 2 cut(s) 116, 1514
MseI TTAA 6 cut(s) 167, 378, 1050, 1110, 1200, 1487
Msp20I TGGCCA 2 cut(s) 116, 1514
MspI CCGG 2 cut(s) 161, 362
MspR9I CCNGG 3 cut(s) 161, 554, 1021
Mva1269I GAATGC 1 cut(s) 469
MvaI CCWGG 2 cut(s) 554, 1021
MwoI GCNNNNNNNGC 5 cut(s) 629, 965, 1112, 1121, 1589
NciI CCSGG 1 cut(s) 161
NcoI CCATGG 1 cut(s) 1621
NdeII GATC 4 cut(s) 147, 577, 907, 1254
NlaIII CATG 8 cut(s) 275, 404, 442, 850, 1458, 1547, 1625, 1715
NlaIV GGNNCC 3 cut(s) 837, 1074, 1335
NmeAIII GCCGAG 1 cut(s) 505
NmuCI GTSAC 3 cut(s) 887, 1266, 1657
NsbI TGCGCA 1 cut(s) 633
PaeR7I CTCGAG 1 cut(s) 1262
PceI AGGCCT 1 cut(s) 1610
PctI GAATGC 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 594
PfeI GAWTC 8 cut(s) 7, 393, 422, 595, 759, 1216, 1399, 1683
PflMI CCANNNNNTGG 1 cut(s) 137
PkrI GCNGC 3 cut(s) 867, 1582, 1725
PleI GAGTC 5 cut(s) 1200, 1254, 1273, 1576, 1714
PpsI GAGTC 5 cut(s) 1200, 1254, 1273, 1576, 1714
Ppu21I YACGTR 1 cut(s) 983
PshAI GACNNNNGTC 1 cut(s) 1264
Psp124BI GAGCTC 1 cut(s) 486
Psp1406I AACGTT 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 552, 1019
PspGI CCWGG 2 cut(s) 552, 1019
PspN4I GGNNCC 3 cut(s) 837, 1074, 1335
PspPI GGNCC 5 cut(s) 435, 473, 1006, 1073, 1370
PspXI VCTCGAGB 1 cut(s) 1262
PstNI CAGNNNCTG 1 cut(s) 476
RsaI GTAC 3 cut(s) 103, 1148, 1388
RsaNI GTAC 3 cut(s) 102, 1147, 1387
SacI GAGCTC 1 cut(s) 486
SalI GTCGAC 2 cut(s) 190, 1570
SaqAI TTAA 6 cut(s) 167, 378, 1050, 1110, 1200, 1487
SatI GCNGC 3 cut(s) 866, 1581, 1724
Sau3AI GATC 4 cut(s) 147, 577, 907, 1254
Sau96I GGNCC 5 cut(s) 435, 473, 1006, 1073, 1370
ScaI AGTACT 1 cut(s) 103
SchI GAGTC 5 cut(s) 1200, 1254, 1274, 1577, 1715
ScrFI CCNGG 3 cut(s) 161, 554, 1021
SduI GDGCHC 4 cut(s) 486, 982, 1108, 1338
SfaNI GCATC 3 cut(s) 619, 832, 925
Sfr274I CTCGAG 1 cut(s) 1262
SinI GGWCC 2 cut(s) 435, 1073
SlaI CTCGAG 1 cut(s) 1262
SmlI CTYRAG 3 cut(s) 443, 1262, 1464
SmoI CTYRAG 3 cut(s) 443, 1262, 1464
SseBI AGGCCT 1 cut(s) 1610
SsiI CCGC 3 cut(s) 269, 1558, 1581
SspI AATATT 1 cut(s) 988
SstI GAGCTC 1 cut(s) 486
StuI AGGCCT 1 cut(s) 1610
StyD4I CCNGG 3 cut(s) 159, 552, 1019
StyI CCWWGG 1 cut(s) 1621
TaaI ACNGT 3 cut(s) 135, 278, 460
TaiI ACGT 4 cut(s) 65, 294, 985, 1362
TaqI TCGA 5 cut(s) 191, 669, 1263, 1566, 1571
TaqII GACCGA 1 cut(s) 1645
TatI WGTACW 3 cut(s) 101, 1146, 1386
TauI GCSGC 1 cut(s) 1583
TfiI GAWTC 8 cut(s) 7, 393, 422, 595, 759, 1216, 1399, 1683
Tru1I TTAA 6 cut(s) 167, 378, 1050, 1110, 1200, 1487
Tru9I TTAA 6 cut(s) 167, 378, 1050, 1110, 1200, 1487
TscAI CASTG 3 cut(s) 736, 1330, 1522
TseFI GTSAC 3 cut(s) 887, 1266, 1657
TseI GCWGC 2 cut(s) 865, 1723
Tsp45I GTSAC 3 cut(s) 887, 1266, 1657
TspDTI ATGAA 8 cut(s) 17, 186, 232, 389, 803, 1560, 1647, 1728
TspGWI ACGGA 1 cut(s) 1065
TspRI CASTG 3 cut(s) 736, 1330, 1522
Van91I CCANNNNNTGG 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 435, 1073
XapI RAATTY 2 cut(s) 516, 1663
XhoI CTCGAG 1 cut(s) 1262
XmiI GTMKAC 2 cut(s) 191, 1571
XmnI GAANNNNTTC 1 cut(s) 594
ZrmI AGTACT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.