FvH4_3g40060

Endo-1,4-beta-xylanase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
33889055 .. 33890812
1758 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40060.t1

Sequence Viewer

Length: 1758 bp
ATGACGACCGGAGGCAAGAGCAATCTGCTGCTGCTGCTGCTATGCACGTTTCTTTTTCCACGGTTTGAAGTCAATGCACTATCCTATGACTACTCGGCCAGCATCGAGTGTTTGGAAAACCCTCACAAACCCCAGTATGGTGGAGGAATCATCGTAAACCCTGAACTAAATCACGGCTTGAGAGGCTGGTCTACTTTCGGTAATGCAAAACTCCAGCATAGAGAATCACAGGCAGGCAACAAATTCGCTGTGGCTTGTAACAGAAACCAACCACATGCTGGTATTTCTCAAAAGACTTATTTGCAAGGAAACAAGCTTTATACTTTCTCTGCTTGGATACAAGTGAGTGGTGGCAGAGGCGTTCCGGTAACAGCTATTTTCAAGACTAGTTCTGGATCATTCATCCATGCTGGTGCTATTGTTGCAGAATCCAATTGCTGGTCCATGATGAAGGGTGGCCTAACTGTGAATGCATCAGGCCCGGCTGAGCTTTATTTTGAGAGCAAGAACACATCGGTTGACATTTGGGTTGATAGTGTCTCGTTGCAACCGTTCACCGAAAAGGAGTGGAAGTCTCATCATGATCAAAGCATTGAGAAGAATCGAAAGAGCAACGTGAGAATCCAAGCAGTTGATGCAGAAGGAAACCCTCTACGGAATGCCACAATCTCCATCCAACAAAAGGCTCCCAGCTTCCCTTTCGGATGCGCTATGAACAAGAACATTCTCGCCAATACTGCTTACCAAAACTGGTTCACTTCAAGGTTTGGAGTGACAACTTTTGAAAATGAAATGAAATGGTACAGCACAGAAAATTCACAGGGGAAAGAGGACTACTCGGTGGCTGATGCCATGCTTCAGTTTGCTAAACAACACAACATTGCAGTCAGAGGCCACAATGTGTTCTGGGATGATCCCCAGTACCAACTTGGTTGGGTTACATCACTCGATAAACATCAACTGGCTCTGGCTGCTTTCAAGAGGTTATATTCTGTCATGAACAGATACAAGGGCCAAGTTATCGCATGGGATGTCGTTAACGAAAACTTGCACTTTGATTTCTTTGAAAGTAAGTGGGGTAAAAATTCTTCAGCCATCTTATACAATTGGGCGACTAAAGCTGATGGAGAAACCACCTTGTTCATGAATGAATTTAATACCATTGAGGAGAGCGAGGATGGAGACTCCACCCCGGCTAAGTACCTTCAAAAGCTTAGAGATATACAAGCCTTTCCCGGTAACAACAACTTAAAGATGGCAATAGGACTCGAGTCTCATTTCAGGAGTCCTAACATTCCTTACATAAGATCTTCTATTGATACTCTGGCTGCTGCAAACCTGCCAATCTGGATAACAGAATTGGATGTCCAAAGCGGTCCGAATCAGGCATGGTACTTGGAGCAGATCATGAGGGAGGTATATACTCACCCTAAAATTCAAGGAATTATTATTTGGGCAGCATGGAGACCAGAAGGATGTTATAGAATGTGTTTAACAGACAACAATTTCAAGAACTTACCAACTGGTGATGTTGTCGACAAGCTGCTAAGTGAATGGGGTTTGAAGGCTGGCTTCGCCTCTTCTGCTACAACAGATACTAATGGTGTCTTTGAGGCCTCCCTTCCCCATGGAGATTATGAAGTGCAAATCACTGACCTGGAATCTGTGAAAGTTTCTAACGCTATGGTTCAGGGATTGAATGTGGCAGCAAGTTCCAGTGCATCCCAACAACCATTGCTGGTCCAACTTGCTGCATAA

Protein Analysis

586

Amino Acids

65.25

Weight (kDa)

6.18

Isoelectric Point (pI)

36.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBM_4_9 PF02018 50 - 170 5.3e-06 Carbohydrate binding domain
Glyco_hydro_10 PF00331 231 - 486 4.1e-41 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1347
AccB7I CCANNNNNTGG 2 cut(s) 278, 438
AccI GTMKAC 2 cut(s) 191, 1536
AciI CCGC 1 cut(s) 1374
AclWI GGATC 2 cut(s) 403, 908
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 5 cut(s) 242, 814, 1084, 1151, 1434
AcuI CTGAAG 2 cut(s) 842, 1074
AdeI CACNNNGTG 1 cut(s) 901
AfaI GTAC 4 cut(s) 803, 923, 1202, 1394
AfiI CCNNNNNNNGG 4 cut(s) 137, 278, 438, 682
AhlI ACTAGT 1 cut(s) 386
AjnI CCWGG 1 cut(s) 1656
AjuI GAANNNNNNNTTGG 2 cut(s) 1435, 1467
AluBI AGCT 7 cut(s) 316, 374, 490, 693, 1121, 1213, 1543
AluI AGCT 7 cut(s) 316, 374, 490, 693, 1121, 1213, 1543
Alw26I GTCTC 5 cut(s) 544, 579, 1176, 1278, 1459
AlwI GGATC 2 cut(s) 403, 908
Ama87I CYCGRG 1 cut(s) 1268
AoxI GGCC 6 cut(s) 96, 457, 478, 892, 1012, 1614
ApoI RAATTY 5 cut(s) 242, 814, 1084, 1151, 1434
AspLEI GCGC 1 cut(s) 710
AspS9I GGNCC 5 cut(s) 441, 479, 1012, 1376, 1741
AsuC2I CCSGG 3 cut(s) 482, 1193, 1236
AsuHPI GGTGA 3 cut(s) 547, 1418, 1538
AvaI CYCGRG 1 cut(s) 1268
AvaII GGWCC 3 cut(s) 441, 1376, 1741
BarI GAAGNNNNNNTAC 2 cut(s) 1072, 1104
BccI CCATC 5 cut(s) 680, 1103, 1118, 1172, 1249
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 1 cut(s) 1658
BciVI GTATCC 1 cut(s) 330
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 3 cut(s) 482, 1193, 1236
BcoDI GTCTC 5 cut(s) 544, 579, 1176, 1278, 1459
BcuI ACTAGT 1 cut(s) 386
BfaI CTAG 1 cut(s) 387
BfuAI ACCTGC 1 cut(s) 1347
BfuI GTATCC 1 cut(s) 330
BglII AGATCT 1 cut(s) 1307
BlpI GCTNAGC 1 cut(s) 486
Bme1390I CCNGG 4 cut(s) 482, 1193, 1236, 1658
Bme18I GGWCC 3 cut(s) 441, 1376, 1741
BmeT110I CYCGRG 1 cut(s) 1268
BmgT120I GGNCC 5 cut(s) 441, 479, 1012, 1376, 1741
BmiI GGNNCC 1 cut(s) 687
BmrFI CCNGG 4 cut(s) 482, 1193, 1236, 1658
BmrI ACTGGG 2 cut(s) 127, 913
BmsI GCATC 6 cut(s) 111, 482, 625, 695, 838, 1730
BmuI ACTGGG 2 cut(s) 127, 913
BoxI GACNNNNGTC 1 cut(s) 1270
BplI GAGNNNNNCTC 2 cut(s) 821, 853
BpmI CTGGAG 1 cut(s) 197
Bpu1102I GCTNAGC 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 199
BpuMI CCSGG 3 cut(s) 482, 1193, 1236
BsaBI GATNNNNATC 1 cut(s) 954
BsaI GGTCTC 1 cut(s) 1459
BsaJI CCNNGG 3 cut(s) 59, 1191, 1627
BsaWI WCCGGW 2 cut(s) 8, 364
BsaXI ACNNNNNCTCC 2 cut(s) 557, 587
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 278, 438, 682
Bse1I ACTGG 6 cut(s) 133, 755, 919, 966, 1528, 1716
Bse3DI GCAATG 2 cut(s) 879, 1733
Bse8I GATNNNNATC 1 cut(s) 954
BseBI CCWGG 1 cut(s) 1658
BseDI CCNNGG 3 cut(s) 59, 1191, 1627
BseGI GGATG 9 cut(s) 402, 672, 710, 916, 1036, 1183, 1369, 1481, 1721
BseJI GATNNNNATC 1 cut(s) 954
BseLI CCNNNNNNNGG 4 cut(s) 137, 278, 438, 682
BseMI GCAATG 2 cut(s) 879, 1733
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 6 cut(s) 133, 755, 919, 966, 1528, 1716
BseRI GAGGAG 1 cut(s) 1181
BseYI CCCAGC 1 cut(s) 689
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 6 cut(s) 98, 459, 480, 894, 1014, 1616
BsiEI CGRYCG 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 1268
BsiSI CCGG 5 cut(s) 9, 365, 482, 1193, 1236
BslI CCNNNNNNNGG 4 cut(s) 137, 278, 438, 682
BsmAI GTCTC 5 cut(s) 544, 579, 1176, 1278, 1459
BsmI GAATGC 2 cut(s) 475, 664
BsnI GGCC 6 cut(s) 98, 459, 480, 894, 1014, 1616
Bso31I GGTCTC 1 cut(s) 1459
BsoBI CYCGRG 1 cut(s) 1268
Bsp143I GATC 5 cut(s) 395, 583, 913, 1307, 1404
Bsp1720I GCTNAGC 1 cut(s) 486
Bsp19I CCATGG 1 cut(s) 1627
BspACI CCGC 1 cut(s) 1374
BspANI GGCC 6 cut(s) 98, 459, 480, 894, 1014, 1616
BspCNI CTCAG 1 cut(s) 478
BspHI TCATGA 4 cut(s) 580, 996, 1143, 1407
BspLI GGNNCC 1 cut(s) 687
BspMI ACCTGC 1 cut(s) 1347
BspPI GGATC 2 cut(s) 403, 908
BspTNI GGTCTC 1 cut(s) 1459
BsrDI GCAATG 2 cut(s) 879, 1733
BsrI ACTGG 6 cut(s) 133, 755, 919, 966, 1528, 1716
BssECI CCNNGG 3 cut(s) 59, 1191, 1627
BssMI GATC 5 cut(s) 395, 583, 913, 1307, 1404
BssT1I CCWWGG 1 cut(s) 1627
Bst2UI CCWGG 1 cut(s) 1658
Bst4CI ACNGT 3 cut(s) 63, 466, 552
Bst6I CTCTTC 1 cut(s) 1585
BstAPI GCANNNNNTGC 1 cut(s) 635
BstC8I GCNNGC 3 cut(s) 100, 235, 1570
BstDEI CTNAG 4 cut(s) 486, 1197, 1214, 1547
BstDSI CCRYGG 2 cut(s) 59, 1627
BstF5I GGATG 9 cut(s) 402, 672, 710, 916, 1036, 1183, 1369, 1481, 1721
BstHHI GCGC 1 cut(s) 710
BstKTI GATC 5 cut(s) 398, 586, 916, 1310, 1407
BstMAI GTCTC 5 cut(s) 544, 579, 1176, 1278, 1459
BstMBI GATC 5 cut(s) 395, 583, 913, 1307, 1404
BstMCI CGRYCG 1 cut(s) 9
BstNI CCWGG 1 cut(s) 1658
BstNSI RCATGY 1 cut(s) 278
BstPAI GACNNNNGTC 1 cut(s) 1270
BstSCI CCNGG 4 cut(s) 480, 1191, 1234, 1656
BstX2I RGATCY 1 cut(s) 1307
BstXI CCANNNNNNTGG 1 cut(s) 140
BstYI RGATCY 1 cut(s) 1307
BsuI GTATCC 1 cut(s) 330
BsuRI GGCC 6 cut(s) 98, 459, 480, 894, 1014, 1616
BtgI CCRYGG 2 cut(s) 59, 1627
BtsCI GGATG 9 cut(s) 402, 672, 710, 916, 1036, 1183, 1369, 1481, 1721
BtsIMutI CAGTG 2 cut(s) 1650, 1723
BveI ACCTGC 1 cut(s) 1347
Cac8I GCNNGC 3 cut(s) 100, 235, 1570
CciI TCATGA 4 cut(s) 580, 996, 1143, 1407
CfoI GCGC 1 cut(s) 710
Cfr13I GGNCC 5 cut(s) 441, 479, 1012, 1376, 1741
CpoI CGGWCCG 1 cut(s) 1376
Csp6I GTAC 4 cut(s) 802, 922, 1201, 1393
CspI CGGWCCG 1 cut(s) 1376
CviQI GTAC 4 cut(s) 802, 922, 1201, 1393
DdeI CTNAG 4 cut(s) 486, 1197, 1214, 1547
DpnI GATC 5 cut(s) 397, 585, 915, 1309, 1406
DpnII GATC 5 cut(s) 395, 583, 913, 1307, 1404
DraIII CACNNNGTG 1 cut(s) 901
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 1585
EarI CTCTTC 1 cut(s) 1585
Eco130I CCWWGG 1 cut(s) 1627
Eco147I AGGCCT 1 cut(s) 1616
Eco31I GGTCTC 1 cut(s) 1459
Eco47I GGWCC 3 cut(s) 441, 1376, 1741
Eco57I CTGAAG 2 cut(s) 842, 1074
Eco88I CYCGRG 1 cut(s) 1268
EcoRII CCWGG 1 cut(s) 1656
EcoT14I CCWWGG 1 cut(s) 1627
EcoT22I ATGCAT 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 1627
FalI AAGNNNNNCTT 2 cut(s) 1556, 1588
FbaI TGATCA 1 cut(s) 583
FblI GTMKAC 2 cut(s) 191, 1536
FokI GGATG 9 cut(s) 389, 659, 717, 923, 1043, 1190, 1376, 1488, 1708
FspBI CTAG 1 cut(s) 387
GlaI GCGC 1 cut(s) 709
GsaI CCCAGC 1 cut(s) 693
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 6 cut(s) 98, 459, 480, 894, 1014, 1616
HapII CCGG 5 cut(s) 9, 365, 482, 1193, 1236
HhaI GCGC 1 cut(s) 710
Hin6I GCGC 1 cut(s) 708
HinP1I GCGC 1 cut(s) 708
HincII GTYRAC 3 cut(s) 520, 1039, 1537
HindII GTYRAC 3 cut(s) 520, 1039, 1537
HindIII AAGCTT 2 cut(s) 314, 1211
HpaI GTTAAC 1 cut(s) 1039
HpaII CCGG 5 cut(s) 9, 365, 482, 1193, 1236
HphI GGTGA 3 cut(s) 547, 1418, 1538
Hpy166II GTNNAC 7 cut(s) 157, 192, 520, 555, 756, 1039, 1537
Hpy188I TCNGA 3 cut(s) 704, 890, 1380
Hpy8I GTNNAC 7 cut(s) 157, 192, 520, 555, 756, 1039, 1537
HpyAV CCTTC 6 cut(s) 445, 635, 1214, 1466, 1558, 1631
HpyCH4III ACNGT 3 cut(s) 63, 466, 552
HpyCH4IV ACGT 2 cut(s) 47, 615
HpyF3I CTNAG 4 cut(s) 486, 1197, 1214, 1547
HpySE526I ACGT 2 cut(s) 47, 615
HspAI GCGC 1 cut(s) 708
Ksp22I TGATCA 1 cut(s) 583
KspAI GTTAAC 1 cut(s) 1039
Kzo9I GATC 5 cut(s) 395, 583, 913, 1307, 1404
LmnI GCTCC 2 cut(s) 691, 1399
LweI GCATC 6 cut(s) 111, 482, 625, 695, 838, 1730
MaeI CTAG 1 cut(s) 387
MaeII ACGT 2 cut(s) 47, 615
MaeIII GTNAC 5 cut(s) 257, 367, 772, 937, 1238
MalI GATC 5 cut(s) 397, 585, 915, 1309, 1406
MboI GATC 5 cut(s) 395, 583, 913, 1307, 1404
MboII GAAGA 4 cut(s) 610, 1080, 1302, 1572
MfeI CAATTG 2 cut(s) 433, 1105
MflI RGATCY 1 cut(s) 1307
MlyI GAGTC 4 cut(s) 1178, 1260, 1280, 1294
MmeI TCCRAC 1 cut(s) 700
Mph1103I ATGCAT 1 cut(s) 475
MseI TTAA 4 cut(s) 1038, 1155, 1250, 1493
MslI CAYNNNNRTG 1 cut(s) 411
MspI CCGG 5 cut(s) 9, 365, 482, 1193, 1236
MspR9I CCNGG 4 cut(s) 482, 1193, 1236, 1658
MunI CAATTG 2 cut(s) 433, 1105
Mva1269I GAATGC 2 cut(s) 475, 664
MvaI CCWGG 1 cut(s) 1658
NciI CCSGG 3 cut(s) 482, 1193, 1236
NcoI CCATGG 1 cut(s) 1627
NdeII GATC 5 cut(s) 395, 583, 913, 1307, 1404
NlaIV GGNNCC 1 cut(s) 687
NmeAIII GCCGAG 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 772
NsiI ATGCAT 1 cut(s) 475
NspI RCATGY 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 1268
PagI TCATGA 4 cut(s) 580, 996, 1143, 1407
PceI AGGCCT 1 cut(s) 1616
PcsI WCGNNNNNNNCGW 1 cut(s) 548
PctI GAATGC 2 cut(s) 475, 664
PfeI GAWTC 7 cut(s) 147, 224, 428, 601, 621, 1381, 1661
PflMI CCANNNNNTGG 2 cut(s) 278, 438
PleI GAGTC 4 cut(s) 1178, 1260, 1279, 1293
PpsI GAGTC 4 cut(s) 1178, 1260, 1279, 1293
PshAI GACNNNNGTC 1 cut(s) 1270
Psp6I CCWGG 1 cut(s) 1656
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 1 cut(s) 1656
PspN4I GGNNCC 1 cut(s) 687
PspPI GGNCC 5 cut(s) 441, 479, 1012, 1376, 1741
PspXI VCTCGAGB 1 cut(s) 1268
PsuI RGATCY 1 cut(s) 1307
RsaI GTAC 4 cut(s) 803, 923, 1202, 1394
RsaNI GTAC 4 cut(s) 802, 922, 1201, 1393
RseI CAYNNNNRTG 1 cut(s) 411
Rsr2I CGGWCCG 1 cut(s) 1376
RsrII CGGWCCG 1 cut(s) 1376
SalI GTCGAC 1 cut(s) 1535
SaqAI TTAA 4 cut(s) 1038, 1155, 1250, 1493
Sau3AI GATC 5 cut(s) 395, 583, 913, 1307, 1404
Sau96I GGNCC 5 cut(s) 441, 479, 1012, 1376, 1741
SchI GAGTC 4 cut(s) 1178, 1260, 1280, 1294
ScrFI CCNGG 4 cut(s) 482, 1193, 1236, 1658
SfaNI GCATC 6 cut(s) 111, 482, 625, 695, 838, 1730
Sfr274I CTCGAG 1 cut(s) 1268
SinI GGWCC 3 cut(s) 441, 1376, 1741
SlaI CTCGAG 1 cut(s) 1268
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 2 cut(s) 178, 1268
SmoI CTYRAG 2 cut(s) 178, 1268
SpeI ACTAGT 1 cut(s) 386
SseBI AGGCCT 1 cut(s) 1616
SsiI CCGC 1 cut(s) 1374
SspMI CTAG 1 cut(s) 387
StuI AGGCCT 1 cut(s) 1616
StyD4I CCNGG 4 cut(s) 480, 1191, 1234, 1656
StyI CCWWGG 1 cut(s) 1627
TaaI ACNGT 3 cut(s) 63, 466, 552
TaiI ACGT 2 cut(s) 50, 618
TaqI TCGA 5 cut(s) 105, 604, 948, 1269, 1536
TfiI GAWTC 7 cut(s) 147, 224, 428, 601, 621, 1381, 1661
Tru1I TTAA 4 cut(s) 1038, 1155, 1250, 1493
Tru9I TTAA 4 cut(s) 1038, 1155, 1250, 1493
TscAI CASTG 2 cut(s) 1657, 1723
TseFI GTSAC 1 cut(s) 772
Tsp45I GTSAC 1 cut(s) 772
TspGWI ACGGA 1 cut(s) 670
TspRI CASTG 2 cut(s) 1657, 1723
Van91I CCANNNNNTGG 2 cut(s) 278, 438
VpaK11BI GGWCC 3 cut(s) 441, 1376, 1741
XapI RAATTY 5 cut(s) 242, 814, 1084, 1151, 1434
XceI RCATGY 1 cut(s) 278
XcmI CCANNNNNNNNNTGG 2 cut(s) 275, 926
XhoI CTCGAG 1 cut(s) 1268
XmiI GTMKAC 2 cut(s) 191, 1536
XspI CTAG 1 cut(s) 387
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.