ubiquitin-dependent protein catabolic process
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G33830 AT4G33840 AT4G33860 |
| fragaria_vesca | FvH4_2g03792 FvH4_2g03793 FvH4_2g03793 FvH4_2g03840 FvH4_3g40060 |
| malus_domestica | MD05G1100700.v1.1 MD10G1105900.v1.1 MD10G1106500.v1.1 |
| prunus_persica | Prupe.8G145100_v2.0.a1 Prupe.8G145200_v2.0.a1 Prupe.8G145300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0072231 RchiOBHm_Chr6g0252841 RchiOBHm_Chr6g0252851 |
| rosa_laevigata | RLG00000015059 RLG00000015061 |
| rosa_multiflora | Rmu_co8129022.1_g000001 Rmu_sc0000714.1_g000002 Rmu_sc0000829.1_g000017 Rmu_sc0000829.1_g000029 Rmu_sc0028322.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00212390 |
| rosa_rugosa | Rorug05G0417000 Rorug05G0539100 |
| rosa_samantha | Rh5DG505200 Rh6AG055100 Rh6BG049200 Rh6CG047900 Rh6CG048000 Rh6CG048100 Rh6DG043400 Rh6DG043600 Rh6DG043700 |
| rosa_wichuraiana | Rw5G043950 Rw6G004970 Rw6G004990 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 149, 392, 1092 |
| AciI | CCGC | 2 cut(s) | 263, 413 |
| AclWI | GGATC | 1 cut(s) | 1349 |
| AcsI | RAATTY | 5 cut(s) | 233, 255, 976, 1033, 1045 |
| AcuI | CTGAAG | 5 cut(s) | 447, 830, 1062, 1559, 1629 |
| AfaI | GTAC | 3 cut(s) | 831, 911, 1190 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 131, 670 |
| AgeI | ACCGGT | 1 cut(s) | 1514 |
| AjiI | CACGTC | 1 cut(s) | 815 |
| AjnI | CCWGG | 1 cut(s) | 807 |
| Alw21I | GWGCWC | 2 cut(s) | 480, 1562 |
| Alw26I | GTCTC | 4 cut(s) | 282, 567, 1266, 1704 |
| AlwI | GGATC | 1 cut(s) | 1349 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 383, 833 |
| Ama87I | CYCGRG | 1 cut(s) | 155 |
| AoxI | GGCC | 2 cut(s) | 880, 1599 |
| ApeKI | GCWGC | 5 cut(s) | 89, 362, 1172, 1322, 1393 |
| ApoI | RAATTY | 5 cut(s) | 233, 255, 976, 1033, 1045 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 413, 445 |
| AsiGI | ACCGGT | 1 cut(s) | 1514 |
| AspS9I | GGNCC | 2 cut(s) | 429, 1457 |
| AsuC2I | CCSGG | 1 cut(s) | 1224 |
| AsuHPI | GGTGA | 4 cut(s) | 413, 535, 1409, 1529 |
| AvaI | CYCGRG | 1 cut(s) | 155 |
| AvaII | GGWCC | 2 cut(s) | 429, 1457 |
| BaeGI | GKGCMC | 1 cut(s) | 1335 |
| BanII | GRGCYC | 2 cut(s) | 480, 1562 |
| BauI | CACGAG | 1 cut(s) | 239 |
| Bbv12I | GWGCWC | 2 cut(s) | 480, 1562 |
| BbvI | GCAGC | 5 cut(s) | 101, 374, 1184, 1309, 1405 |
| BccI | CCATC | 5 cut(s) | 161, 174, 668, 1057, 1106 |
| BciT130I | CCWGG | 1 cut(s) | 809 |
| BciVI | GTATCC | 2 cut(s) | 3, 321 |
| BclI | TGATCA | 1 cut(s) | 1372 |
| BcnI | CCSGG | 1 cut(s) | 1224 |
| BcoDI | GTCTC | 4 cut(s) | 282, 567, 1266, 1704 |
| BfaI | CTAG | 1 cut(s) | 1695 |
| BfmI | CTRYAG | 1 cut(s) | 206 |
| BfuI | GTATCC | 2 cut(s) | 3, 321 |
| BisI | GCNGC | 5 cut(s) | 90, 363, 1173, 1323, 1394 |
| BlpI | GCTNAGC | 1 cut(s) | 1561 |
| BlsI | GCNGC | 5 cut(s) | 91, 364, 1174, 1324, 1395 |
| Bme1390I | CCNGG | 2 cut(s) | 809, 1224 |
| Bme18I | GGWCC | 2 cut(s) | 429, 1457 |
| BmeT110I | CYCGRG | 1 cut(s) | 155 |
| BmgBI | CACGTC | 1 cut(s) | 815 |
| BmgT120I | GGNCC | 2 cut(s) | 429, 1457 |
| BmiI | GGNNCC | 3 cut(s) | 675, 1458, 1459 |
| BmrFI | CCNGG | 2 cut(s) | 809, 1224 |
| BmrI | ACTGGG | 2 cut(s) | 901, 1105 |
| BmsI | GCATC | 5 cut(s) | 460, 534, 613, 826, 1694 |
| BmuI | ACTGGG | 2 cut(s) | 901, 1105 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 809, 841 |
| BpmI | CTGGAG | 1 cut(s) | 1164 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1561 |
| BpuEI | CTTGAG | 2 cut(s) | 422, 1277 |
| BpuMI | CCSGG | 1 cut(s) | 1224 |
| BsaI | GGTCTC | 1 cut(s) | 1704 |
| BsaJI | CCNNGG | 5 cut(s) | 600, 808, 1462, 1612, 1662 |
| BsaWI | WCCGGW | 1 cut(s) | 1514 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 131, 670 |
| Bse118I | RCCGGY | 1 cut(s) | 1514 |
| Bse1I | ACTGG | 2 cut(s) | 907, 1100 |
| Bse3DI | GCAATG | 5 cut(s) | 530, 560, 579, 867, 1008 |
| BseBI | CCWGG | 1 cut(s) | 809 |
| BseDI | CCNNGG | 5 cut(s) | 600, 808, 1462, 1612, 1662 |
| BseGI | GGATG | 7 cut(s) | 185, 660, 711, 904, 1024, 1068, 1472 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 131, 670 |
| BseMI | GCAATG | 5 cut(s) | 530, 560, 579, 867, 1008 |
| BseMII | CTCAG | 5 cut(s) | 131, 840, 1216, 1436, 1575 |
| BseNI | ACTGG | 2 cut(s) | 907, 1100 |
| BseSI | GKGCMC | 1 cut(s) | 1335 |
| BseXI | GCAGC | 5 cut(s) | 101, 374, 1184, 1309, 1405 |
| BshFI | GGCC | 2 cut(s) | 882, 1601 |
| BshTI | ACCGGT | 1 cut(s) | 1514 |
| BsiHKAI | GWGCWC | 2 cut(s) | 480, 1562 |
| BsiHKCI | CYCGRG | 1 cut(s) | 155 |
| BsiSI | CCGG | 2 cut(s) | 1223, 1515 |
| BslFI | GGGAC | 2 cut(s) | 825, 1470 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 131, 670 |
| BsmAI | GTCTC | 4 cut(s) | 282, 567, 1266, 1704 |
| BsmFI | GGGAC | 2 cut(s) | 825, 1470 |
| BsmI | GAATGC | 1 cut(s) | 1411 |
| BsnI | GGCC | 2 cut(s) | 882, 1601 |
| Bso31I | GGTCTC | 1 cut(s) | 1704 |
| BsoBI | CYCGRG | 1 cut(s) | 155 |
| Bsp1286I | GDGCHC | 3 cut(s) | 480, 1335, 1562 |
| Bsp143I | GATC | 5 cut(s) | 571, 1341, 1363, 1372, 1632 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1561 |
| Bsp19I | CCATGG | 1 cut(s) | 1612 |
| BspACI | CCGC | 2 cut(s) | 263, 413 |
| BspANI | GGCC | 2 cut(s) | 882, 1601 |
| BspCNI | CTCAG | 5 cut(s) | 130, 839, 1215, 1435, 1574 |
| BspLI | GGNNCC | 3 cut(s) | 675, 1458, 1459 |
| BspPI | GGATC | 1 cut(s) | 1349 |
| BspTNI | GGTCTC | 1 cut(s) | 1704 |
| BsrDI | GCAATG | 5 cut(s) | 530, 560, 579, 867, 1008 |
| BsrFI | RCCGGY | 1 cut(s) | 1514 |
| BsrI | ACTGG | 2 cut(s) | 907, 1100 |
| BssAI | RCCGGY | 1 cut(s) | 1514 |
| BssECI | CCNNGG | 5 cut(s) | 600, 808, 1462, 1612, 1662 |
| BssMI | GATC | 5 cut(s) | 571, 1341, 1363, 1372, 1632 |
| BssSI | CACGAG | 1 cut(s) | 239 |
| BssT1I | CCWWGG | 4 cut(s) | 600, 1462, 1612, 1662 |
| Bst2BI | CACGAG | 1 cut(s) | 239 |
| Bst2UI | CCWGG | 1 cut(s) | 809 |
| Bst4CI | ACNGT | 2 cut(s) | 454, 540 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 623 |
| BstC8I | GCNNGC | 1 cut(s) | 213 |
| BstDEI | CTNAG | 7 cut(s) | 117, 826, 1185, 1202, 1400, 1422, 1561 |
| BstDSI | CCRYGG | 1 cut(s) | 1612 |
| BstF5I | GGATG | 7 cut(s) | 185, 660, 711, 904, 1024, 1068, 1472 |
| BstKTI | GATC | 5 cut(s) | 574, 1344, 1366, 1375, 1635 |
| BstMAI | GTCTC | 4 cut(s) | 282, 567, 1266, 1704 |
| BstMBI | GATC | 5 cut(s) | 571, 1341, 1363, 1372, 1632 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 623, 940, 1106, 1115, 1181 |
| BstNI | CCWGG | 1 cut(s) | 809 |
| BstNSI | RCATGY | 1 cut(s) | 277 |
| BstSCI | CCNGG | 2 cut(s) | 807, 1222 |
| BstSFI | CTRYAG | 1 cut(s) | 206 |
| BstSLI | GKGCMC | 1 cut(s) | 1335 |
| BstV1I | GCAGC | 5 cut(s) | 101, 374, 1184, 1309, 1405 |
| BsuI | GTATCC | 2 cut(s) | 3, 321 |
| BsuRI | GGCC | 2 cut(s) | 882, 1601 |
| BtgI | CCRYGG | 1 cut(s) | 1612 |
| BtgZI | GCGATG | 1 cut(s) | 483 |
| BtrI | CACGTC | 1 cut(s) | 815 |
| BtsCI | GGATG | 7 cut(s) | 185, 660, 711, 904, 1024, 1068, 1472 |
| Cac8I | GCNNGC | 1 cut(s) | 213 |
| CaiI | CAGNNNCTG | 2 cut(s) | 383, 833 |
| Cfr10I | RCCGGY | 1 cut(s) | 1514 |
| Cfr13I | GGNCC | 2 cut(s) | 429, 1457 |
| Csp6I | GTAC | 3 cut(s) | 830, 910, 1189 |
| CspAI | ACCGGT | 1 cut(s) | 1514 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 115, 150 |
| CviAII | CATG | 5 cut(s) | 266, 274, 433, 841, 1613 |
| CviQI | GTAC | 3 cut(s) | 830, 910, 1189 |
| DdeI | CTNAG | 7 cut(s) | 117, 826, 1185, 1202, 1400, 1422, 1561 |
| DpnI | GATC | 5 cut(s) | 573, 1343, 1365, 1374, 1634 |
| DpnII | GATC | 5 cut(s) | 571, 1341, 1363, 1372, 1632 |
| Ecl136II | GAGCTC | 2 cut(s) | 478, 1560 |
| Eco130I | CCWWGG | 4 cut(s) | 600, 1462, 1612, 1662 |
| Eco147I | AGGCCT | 1 cut(s) | 1601 |
| Eco24I | GRGCYC | 2 cut(s) | 480, 1562 |
| Eco31I | GGTCTC | 1 cut(s) | 1704 |
| Eco47I | GGWCC | 2 cut(s) | 429, 1457 |
| Eco53kI | GAGCTC | 2 cut(s) | 478, 1560 |
| Eco57I | CTGAAG | 5 cut(s) | 447, 830, 1062, 1559, 1629 |
| Eco88I | CYCGRG | 1 cut(s) | 155 |
| EcoICRI | GAGCTC | 2 cut(s) | 478, 1560 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1457 |
| EcoRI | GAATTC | 1 cut(s) | 255 |
| EcoRII | CCWGG | 1 cut(s) | 807 |
| EcoT14I | CCWWGG | 4 cut(s) | 600, 1462, 1612, 1662 |
| EcoT38I | GRGCYC | 2 cut(s) | 480, 1562 |
| ErhI | CCWWGG | 4 cut(s) | 600, 1462, 1612, 1662 |
| FaeI | CATG | 5 cut(s) | 269, 277, 436, 844, 1616 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 275, 307, 670, 702 |
| FaqI | GGGAC | 2 cut(s) | 825, 1470 |
| FatI | CATG | 5 cut(s) | 265, 273, 432, 840, 1612 |
| FbaI | TGATCA | 1 cut(s) | 1372 |
| Fnu4HI | GCNGC | 5 cut(s) | 90, 363, 1173, 1323, 1394 |
| FokI | GGATG | 7 cut(s) | 192, 647, 698, 911, 1031, 1075, 1479 |
| FriOI | GRGCYC | 2 cut(s) | 480, 1562 |
| Fsp4HI | GCNGC | 5 cut(s) | 90, 363, 1173, 1323, 1394 |
| FspBI | CTAG | 1 cut(s) | 1695 |
| GluI | GCNGC | 5 cut(s) | 90, 363, 1173, 1323, 1394 |
| GsuI | CTGGAG | 1 cut(s) | 1164 |
| HaeIII | GGCC | 2 cut(s) | 882, 1601 |
| HapII | CCGG | 2 cut(s) | 1223, 1515 |
| Hin1II | CATG | 5 cut(s) | 269, 277, 436, 844, 1616 |
| HincII | GTYRAC | 2 cut(s) | 520, 1027 |
| HindII | GTYRAC | 2 cut(s) | 520, 1027 |
| HindIII | AAGCTT | 1 cut(s) | 1216 |
| HinfI | GANTC | 9 cut(s) | 218, 416, 609, 902, 1259, 1426, 1434, 1580, 1655 |
| HpaII | CCGG | 2 cut(s) | 1223, 1515 |
| HphI | GGTGA | 4 cut(s) | 413, 535, 1409, 1529 |
| Hpy166II | GTNNAC | 8 cut(s) | 289, 520, 543, 744, 1027, 1238, 1528, 1669 |
| Hpy188I | TCNGA | 4 cut(s) | 120, 758, 1205, 1425 |
| Hpy188III | TCNNGA | 7 cut(s) | 373, 384, 487, 569, 1132, 1307, 1370 |
| Hpy8I | GTNNAC | 8 cut(s) | 289, 520, 543, 744, 1027, 1238, 1528, 1669 |
| HpyAV | CCTTC | 3 cut(s) | 1202, 1534, 1616 |
| HpyCH4III | ACNGT | 2 cut(s) | 454, 540 |
| HpyCH4IV | ACGT | 5 cut(s) | 746, 814, 1356, 1521, 1680 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 623, 940, 1106, 1115, 1181 |
| HpyF3I | CTNAG | 7 cut(s) | 117, 826, 1185, 1202, 1400, 1422, 1561 |
| HpySE526I | ACGT | 5 cut(s) | 746, 814, 1356, 1521, 1680 |
| Hsp92II | CATG | 5 cut(s) | 269, 277, 436, 844, 1616 |
| KflI | GGGWCCC | 1 cut(s) | 1457 |
| Ksp22I | TGATCA | 1 cut(s) | 1372 |
| Kzo9I | GATC | 5 cut(s) | 571, 1341, 1363, 1372, 1632 |
| LmnI | GCTCC | 4 cut(s) | 679, 1115, 1390, 1557 |
| Lsp1109I | GCAGC | 5 cut(s) | 101, 374, 1184, 1309, 1405 |
| LweI | GCATC | 5 cut(s) | 460, 534, 613, 826, 1694 |
| MaeI | CTAG | 1 cut(s) | 1695 |
| MaeII | ACGT | 5 cut(s) | 746, 814, 1356, 1521, 1680 |
| MaeIII | GTNAC | 6 cut(s) | 227, 299, 760, 1469, 1517, 1533 |
| MalI | GATC | 5 cut(s) | 573, 1343, 1365, 1374, 1634 |
| MboI | GATC | 5 cut(s) | 571, 1341, 1363, 1372, 1632 |
| MboII | GAAGA | 2 cut(s) | 1635, 1642 |
| MhlI | GDGCHC | 3 cut(s) | 480, 1335, 1562 |
| MluCI | AATT | 9 cut(s) | 233, 255, 421, 976, 1033, 1045, 1083, 1349, 1673 |
| MlyI | GAGTC | 2 cut(s) | 1268, 1574 |
| MmeI | TCCRAC | 1 cut(s) | 688 |
| MseI | TTAA | 6 cut(s) | 161, 173, 1104, 1143, 1500, 1717 |
| MspI | CCGG | 2 cut(s) | 1223, 1515 |
| MspR9I | CCNGG | 2 cut(s) | 809, 1224 |
| Mva1269I | GAATGC | 1 cut(s) | 1411 |
| MvaI | CCWGG | 1 cut(s) | 809 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 623, 940, 1106, 1115, 1181 |
| NciI | CCSGG | 1 cut(s) | 1224 |
| NcoI | CCATGG | 1 cut(s) | 1612 |
| NdeII | GATC | 5 cut(s) | 571, 1341, 1363, 1372, 1632 |
| NlaIII | CATG | 5 cut(s) | 269, 277, 436, 844, 1616 |
| NlaIV | GGNNCC | 3 cut(s) | 675, 1458, 1459 |
| NmeAIII | GCCGAG | 1 cut(s) | 499 |
| NmuCI | GTSAC | 2 cut(s) | 299, 1517 |
| NspI | RCATGY | 1 cut(s) | 277 |
| PceI | AGGCCT | 1 cut(s) | 1601 |
| PctI | GAATGC | 1 cut(s) | 1411 |
| PfeI | GAWTC | 7 cut(s) | 218, 416, 609, 902, 1426, 1434, 1655 |
| PinAI | ACCGGT | 1 cut(s) | 1514 |
| PkrI | GCNGC | 5 cut(s) | 91, 364, 1174, 1324, 1395 |
| PleI | GAGTC | 2 cut(s) | 1267, 1574 |
| PpsI | GAGTC | 2 cut(s) | 1267, 1574 |
| PpuMI | RGGWCCY | 1 cut(s) | 1457 |
| PsiI | TTATAA | 3 cut(s) | 149, 392, 1092 |
| Psp124BI | GAGCTC | 2 cut(s) | 480, 1562 |
| Psp5II | RGGWCCY | 1 cut(s) | 1457 |
| Psp6I | CCWGG | 1 cut(s) | 807 |
| PspGI | CCWGG | 1 cut(s) | 807 |
| PspN4I | GGNNCC | 3 cut(s) | 675, 1458, 1459 |
| PspPI | GGNCC | 2 cut(s) | 429, 1457 |
| PspPPI | RGGWCCY | 1 cut(s) | 1457 |
| PstNI | CAGNNNCTG | 2 cut(s) | 383, 833 |
| RsaI | GTAC | 3 cut(s) | 831, 911, 1190 |
| RsaNI | GTAC | 3 cut(s) | 830, 910, 1189 |
| SacI | GAGCTC | 2 cut(s) | 480, 1562 |
| SaqAI | TTAA | 6 cut(s) | 161, 173, 1104, 1143, 1500, 1717 |
| SatI | GCNGC | 5 cut(s) | 90, 363, 1173, 1323, 1394 |
| Sau3AI | GATC | 5 cut(s) | 571, 1341, 1363, 1372, 1632 |
| Sau96I | GGNCC | 2 cut(s) | 429, 1457 |
| SchI | GAGTC | 2 cut(s) | 1268, 1574 |
| ScrFI | CCNGG | 2 cut(s) | 809, 1224 |
| SduI | GDGCHC | 3 cut(s) | 480, 1335, 1562 |
| SfaNI | GCATC | 5 cut(s) | 460, 534, 613, 826, 1694 |
| SfcI | CTRYAG | 1 cut(s) | 206 |
| SinI | GGWCC | 2 cut(s) | 429, 1457 |
| SmlI | CTYRAG | 2 cut(s) | 437, 1256 |
| SmoI | CTYRAG | 2 cut(s) | 437, 1256 |
| Sse9I | AATT | 9 cut(s) | 233, 255, 421, 976, 1033, 1045, 1083, 1349, 1673 |
| SseBI | AGGCCT | 1 cut(s) | 1601 |
| SsiI | CCGC | 2 cut(s) | 263, 413 |
| SspI | AATATT | 1 cut(s) | 1273 |
| SspMI | CTAG | 1 cut(s) | 1695 |
| SstI | GAGCTC | 2 cut(s) | 480, 1562 |
| StuI | AGGCCT | 1 cut(s) | 1601 |
| StyD4I | CCNGG | 2 cut(s) | 807, 1222 |
| StyI | CCWWGG | 4 cut(s) | 600, 1462, 1612, 1662 |
| TaaI | ACNGT | 2 cut(s) | 454, 540 |
| TaiI | ACGT | 5 cut(s) | 749, 817, 1359, 1524, 1683 |
| TaqI | TCGA | 2 cut(s) | 253, 486 |
| TasI | AATT | 9 cut(s) | 233, 255, 421, 976, 1033, 1045, 1083, 1349, 1673 |
| TfiI | GAWTC | 7 cut(s) | 218, 416, 609, 902, 1426, 1434, 1655 |
| Tru1I | TTAA | 6 cut(s) | 161, 173, 1104, 1143, 1500, 1717 |
| Tru9I | TTAA | 6 cut(s) | 161, 173, 1104, 1143, 1500, 1717 |
| TseFI | GTSAC | 2 cut(s) | 299, 1517 |
| TseI | GCWGC | 5 cut(s) | 89, 362, 1172, 1322, 1393 |
| Tsp45I | GTSAC | 2 cut(s) | 299, 1517 |
| TspDTI | ATGAA | 4 cut(s) | 17, 797, 1182, 1506 |
| VpaK11BI | GGWCC | 2 cut(s) | 429, 1457 |
| XapI | RAATTY | 5 cut(s) | 233, 255, 976, 1033, 1045 |
| XceI | RCATGY | 1 cut(s) | 277 |
| XspI | CTAG | 1 cut(s) | 1695 |