Rw6G004990

ubiquitin-dependent protein catabolic process

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
8185124 .. 8189306
4183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G004990.1

Sequence Viewer

Length: 1719 bp
ATGAATGGGATACAATACAATCTGCTTCTGGTGTTATGCACTACTATTTTTGCAGGGTTTGAAGTTGAAGCCTTACCCTATGATTACGCAGCAAGTATAGAGTGTTTAGCAAATCCTCAGAAACCCAAGTATGGTGGAGGTATCATTATAAACCCCGAGTTAAATGATGGGTTAAAAGGATGGACTTCTTTTGGCAAAGCAAAACTACAGCACGCAGAATCACAGGGTAACAAATTCCTCGTGGCTCATAGTCGAATTCAACCGCATGATAGCATGTCTCAAAAGGTTTACTTACGAAGTGACAAGCTCTACACATTTTCTGCTTGGATACAAGCAAGTAGTGGCAGTAGCGTTCCAATAGCAGCTATTTTCAAGACAGCTTCTGGATTTATAAGTGCTGGTGAGATTATTGCGGAATCAAATTGTTGGTCCATGCTCAAGGGTGGTCTAACTGTCAAGGCTTCAGGCGATGCCGAGCTCTATTTCGAGAGCAAGAACACTTCTGTTGAGATTTGGGTTGACAGCATCTCATTGCAACCGTTCACCAAAAAGCAATGGAAGTCTCATCAAGATCAAAGCATTGCCAATAATCGTAAAACCAAGGTGCGAATCCAAGCAGTTGATGCACAAGGCAATCCTCTACCAAATGCTACAATCTCCATCCAACAAAAGGCTCCAAGTTTCCCTTTTGGTTGTTGTATGACTAATCTCATCCTCAACAACCCTGCCCACCAAAAGTGGTTTACGTCAAGGTTCAGAGTAACAACATTTGCTAACGAAATGAAATGGTATAGCACAGAGAATGTCCAGGGACGTGAGGACTACTCAGTACCTGATGCCATGCTTCAGTTTGCACAACAAAACAACATTGCAGTTAGAGGCCATAATGTGTTCTGGGATGATTCCCAGTACCAACTCGGTTGGGTCAAATCGCTCAATGAGCAACAACTTGAAAGTGCAACTAACAAGAGGCTAAATTCTGTTATGCAGAGATACAAGGGCAAGGTCATTGCTTGGGATGTTGTCAACGAAAATTTACATTGGAATTTCTTTGAAAGTAGGATGGGTGCAAATGCTTCAGCAATTTTTTATAACTGGGCTATTAAAGCTGATGGAGCAACCCCCTTGTTCTTGAATGACTTTAATACCATTGAGGATAGCAGAGATGAAGCAGCCTCTCCAGCTAAGTACCTTCAAAAGCTCAGAGATATACAAAGCTTTCCGGGTAATGAGGGTGGACGATATGGGATTGGGCTTGAGTCTCATTTCAATATTACTCCTAACATTCCTTACATACGAGCTTCTCTTGATACTCTTGGTGCTGCAAATGTGCCCATTTGGATCACAGAATTGGACGTAGCAGATCATCTTGATCAGCCAAGTATATTGGAGCAGCTTCTTAGAGAGTTGCATTCTCACCCTCAGATTCAAGGAATCATTATGTGGGCTGGACGGGGACCCCAAGGATGTTACAGAATGTGTTTGACAGATGAAAACTTTAACAACTTGCCAACCGGTGACGTTGTGGACAAGTTACTGAAGGAATGGGGTTATTGGAGCTCAGCTTCTTTCACAGCAGACTCCAATGGTTATTTTGAGGCCTCCCTTCCCCATGGAGATTATGACTTGAAGATCAGCCATTCTTCAGCCATAGATTCCTCCTTGGTTCACAAATTGAACGTGGCATCAACAACTAGGTCTCTGCAACTTTCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

572

Amino Acids

63.96

Weight (kDa)

6.18

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBM_4_9 PF02018 48 - 166 1.1e-06 Carbohydrate binding domain
Glyco_hydro_10 PF00331 227 - 483 5.5e-41 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 149, 392, 1092
AciI CCGC 2 cut(s) 263, 413
AclWI GGATC 1 cut(s) 1349
AcsI RAATTY 5 cut(s) 233, 255, 976, 1033, 1045
AcuI CTGAAG 5 cut(s) 447, 830, 1062, 1559, 1629
AfaI GTAC 3 cut(s) 831, 911, 1190
AfiI CCNNNNNNNGG 2 cut(s) 131, 670
AgeI ACCGGT 1 cut(s) 1514
AjiI CACGTC 1 cut(s) 815
AjnI CCWGG 1 cut(s) 807
Alw21I GWGCWC 2 cut(s) 480, 1562
Alw26I GTCTC 4 cut(s) 282, 567, 1266, 1704
AlwI GGATC 1 cut(s) 1349
AlwNI CAGNNNCTG 2 cut(s) 383, 833
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 2 cut(s) 880, 1599
ApeKI GCWGC 5 cut(s) 89, 362, 1172, 1322, 1393
ApoI RAATTY 5 cut(s) 233, 255, 976, 1033, 1045
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
AsiGI ACCGGT 1 cut(s) 1514
AspS9I GGNCC 2 cut(s) 429, 1457
AsuC2I CCSGG 1 cut(s) 1224
AsuHPI GGTGA 4 cut(s) 413, 535, 1409, 1529
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 2 cut(s) 429, 1457
BaeGI GKGCMC 1 cut(s) 1335
BanII GRGCYC 2 cut(s) 480, 1562
BauI CACGAG 1 cut(s) 239
Bbv12I GWGCWC 2 cut(s) 480, 1562
BbvI GCAGC 5 cut(s) 101, 374, 1184, 1309, 1405
BccI CCATC 5 cut(s) 161, 174, 668, 1057, 1106
BciT130I CCWGG 1 cut(s) 809
BciVI GTATCC 2 cut(s) 3, 321
BclI TGATCA 1 cut(s) 1372
BcnI CCSGG 1 cut(s) 1224
BcoDI GTCTC 4 cut(s) 282, 567, 1266, 1704
BfaI CTAG 1 cut(s) 1695
BfmI CTRYAG 1 cut(s) 206
BfuI GTATCC 2 cut(s) 3, 321
BisI GCNGC 5 cut(s) 90, 363, 1173, 1323, 1394
BlpI GCTNAGC 1 cut(s) 1561
BlsI GCNGC 5 cut(s) 91, 364, 1174, 1324, 1395
Bme1390I CCNGG 2 cut(s) 809, 1224
Bme18I GGWCC 2 cut(s) 429, 1457
BmeT110I CYCGRG 1 cut(s) 155
BmgBI CACGTC 1 cut(s) 815
BmgT120I GGNCC 2 cut(s) 429, 1457
BmiI GGNNCC 3 cut(s) 675, 1458, 1459
BmrFI CCNGG 2 cut(s) 809, 1224
BmrI ACTGGG 2 cut(s) 901, 1105
BmsI GCATC 5 cut(s) 460, 534, 613, 826, 1694
BmuI ACTGGG 2 cut(s) 901, 1105
BplI GAGNNNNNCTC 2 cut(s) 809, 841
BpmI CTGGAG 1 cut(s) 1164
Bpu1102I GCTNAGC 1 cut(s) 1561
BpuEI CTTGAG 2 cut(s) 422, 1277
BpuMI CCSGG 1 cut(s) 1224
BsaI GGTCTC 1 cut(s) 1704
BsaJI CCNNGG 5 cut(s) 600, 808, 1462, 1612, 1662
BsaWI WCCGGW 1 cut(s) 1514
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 670
Bse118I RCCGGY 1 cut(s) 1514
Bse1I ACTGG 2 cut(s) 907, 1100
Bse3DI GCAATG 5 cut(s) 530, 560, 579, 867, 1008
BseBI CCWGG 1 cut(s) 809
BseDI CCNNGG 5 cut(s) 600, 808, 1462, 1612, 1662
BseGI GGATG 7 cut(s) 185, 660, 711, 904, 1024, 1068, 1472
BseLI CCNNNNNNNGG 2 cut(s) 131, 670
BseMI GCAATG 5 cut(s) 530, 560, 579, 867, 1008
BseMII CTCAG 5 cut(s) 131, 840, 1216, 1436, 1575
BseNI ACTGG 2 cut(s) 907, 1100
BseSI GKGCMC 1 cut(s) 1335
BseXI GCAGC 5 cut(s) 101, 374, 1184, 1309, 1405
BshFI GGCC 2 cut(s) 882, 1601
BshTI ACCGGT 1 cut(s) 1514
BsiHKAI GWGCWC 2 cut(s) 480, 1562
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 2 cut(s) 1223, 1515
BslFI GGGAC 2 cut(s) 825, 1470
BslI CCNNNNNNNGG 2 cut(s) 131, 670
BsmAI GTCTC 4 cut(s) 282, 567, 1266, 1704
BsmFI GGGAC 2 cut(s) 825, 1470
BsmI GAATGC 1 cut(s) 1411
BsnI GGCC 2 cut(s) 882, 1601
Bso31I GGTCTC 1 cut(s) 1704
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 3 cut(s) 480, 1335, 1562
Bsp143I GATC 5 cut(s) 571, 1341, 1363, 1372, 1632
Bsp1720I GCTNAGC 1 cut(s) 1561
Bsp19I CCATGG 1 cut(s) 1612
BspACI CCGC 2 cut(s) 263, 413
BspANI GGCC 2 cut(s) 882, 1601
BspCNI CTCAG 5 cut(s) 130, 839, 1215, 1435, 1574
BspLI GGNNCC 3 cut(s) 675, 1458, 1459
BspPI GGATC 1 cut(s) 1349
BspTNI GGTCTC 1 cut(s) 1704
BsrDI GCAATG 5 cut(s) 530, 560, 579, 867, 1008
BsrFI RCCGGY 1 cut(s) 1514
BsrI ACTGG 2 cut(s) 907, 1100
BssAI RCCGGY 1 cut(s) 1514
BssECI CCNNGG 5 cut(s) 600, 808, 1462, 1612, 1662
BssMI GATC 5 cut(s) 571, 1341, 1363, 1372, 1632
BssSI CACGAG 1 cut(s) 239
BssT1I CCWWGG 4 cut(s) 600, 1462, 1612, 1662
Bst2BI CACGAG 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 809
Bst4CI ACNGT 2 cut(s) 454, 540
BstAPI GCANNNNNTGC 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 7 cut(s) 117, 826, 1185, 1202, 1400, 1422, 1561
BstDSI CCRYGG 1 cut(s) 1612
BstF5I GGATG 7 cut(s) 185, 660, 711, 904, 1024, 1068, 1472
BstKTI GATC 5 cut(s) 574, 1344, 1366, 1375, 1635
BstMAI GTCTC 4 cut(s) 282, 567, 1266, 1704
BstMBI GATC 5 cut(s) 571, 1341, 1363, 1372, 1632
BstMWI GCNNNNNNNGC 5 cut(s) 623, 940, 1106, 1115, 1181
BstNI CCWGG 1 cut(s) 809
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 2 cut(s) 807, 1222
BstSFI CTRYAG 1 cut(s) 206
BstSLI GKGCMC 1 cut(s) 1335
BstV1I GCAGC 5 cut(s) 101, 374, 1184, 1309, 1405
BsuI GTATCC 2 cut(s) 3, 321
BsuRI GGCC 2 cut(s) 882, 1601
BtgI CCRYGG 1 cut(s) 1612
BtgZI GCGATG 1 cut(s) 483
BtrI CACGTC 1 cut(s) 815
BtsCI GGATG 7 cut(s) 185, 660, 711, 904, 1024, 1068, 1472
Cac8I GCNNGC 1 cut(s) 213
CaiI CAGNNNCTG 2 cut(s) 383, 833
Cfr10I RCCGGY 1 cut(s) 1514
Cfr13I GGNCC 2 cut(s) 429, 1457
Csp6I GTAC 3 cut(s) 830, 910, 1189
CspAI ACCGGT 1 cut(s) 1514
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviAII CATG 5 cut(s) 266, 274, 433, 841, 1613
CviQI GTAC 3 cut(s) 830, 910, 1189
DdeI CTNAG 7 cut(s) 117, 826, 1185, 1202, 1400, 1422, 1561
DpnI GATC 5 cut(s) 573, 1343, 1365, 1374, 1634
DpnII GATC 5 cut(s) 571, 1341, 1363, 1372, 1632
Ecl136II GAGCTC 2 cut(s) 478, 1560
Eco130I CCWWGG 4 cut(s) 600, 1462, 1612, 1662
Eco147I AGGCCT 1 cut(s) 1601
Eco24I GRGCYC 2 cut(s) 480, 1562
Eco31I GGTCTC 1 cut(s) 1704
Eco47I GGWCC 2 cut(s) 429, 1457
Eco53kI GAGCTC 2 cut(s) 478, 1560
Eco57I CTGAAG 5 cut(s) 447, 830, 1062, 1559, 1629
Eco88I CYCGRG 1 cut(s) 155
EcoICRI GAGCTC 2 cut(s) 478, 1560
EcoO109I RGGNCCY 1 cut(s) 1457
EcoRI GAATTC 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 807
EcoT14I CCWWGG 4 cut(s) 600, 1462, 1612, 1662
EcoT38I GRGCYC 2 cut(s) 480, 1562
ErhI CCWWGG 4 cut(s) 600, 1462, 1612, 1662
FaeI CATG 5 cut(s) 269, 277, 436, 844, 1616
FalI AAGNNNNNCTT 4 cut(s) 275, 307, 670, 702
FaqI GGGAC 2 cut(s) 825, 1470
FatI CATG 5 cut(s) 265, 273, 432, 840, 1612
FbaI TGATCA 1 cut(s) 1372
Fnu4HI GCNGC 5 cut(s) 90, 363, 1173, 1323, 1394
FokI GGATG 7 cut(s) 192, 647, 698, 911, 1031, 1075, 1479
FriOI GRGCYC 2 cut(s) 480, 1562
Fsp4HI GCNGC 5 cut(s) 90, 363, 1173, 1323, 1394
FspBI CTAG 1 cut(s) 1695
GluI GCNGC 5 cut(s) 90, 363, 1173, 1323, 1394
GsuI CTGGAG 1 cut(s) 1164
HaeIII GGCC 2 cut(s) 882, 1601
HapII CCGG 2 cut(s) 1223, 1515
Hin1II CATG 5 cut(s) 269, 277, 436, 844, 1616
HincII GTYRAC 2 cut(s) 520, 1027
HindII GTYRAC 2 cut(s) 520, 1027
HindIII AAGCTT 1 cut(s) 1216
HinfI GANTC 9 cut(s) 218, 416, 609, 902, 1259, 1426, 1434, 1580, 1655
HpaII CCGG 2 cut(s) 1223, 1515
HphI GGTGA 4 cut(s) 413, 535, 1409, 1529
Hpy166II GTNNAC 8 cut(s) 289, 520, 543, 744, 1027, 1238, 1528, 1669
Hpy188I TCNGA 4 cut(s) 120, 758, 1205, 1425
Hpy188III TCNNGA 7 cut(s) 373, 384, 487, 569, 1132, 1307, 1370
Hpy8I GTNNAC 8 cut(s) 289, 520, 543, 744, 1027, 1238, 1528, 1669
HpyAV CCTTC 3 cut(s) 1202, 1534, 1616
HpyCH4III ACNGT 2 cut(s) 454, 540
HpyCH4IV ACGT 5 cut(s) 746, 814, 1356, 1521, 1680
HpyF10VI GCNNNNNNNGC 5 cut(s) 623, 940, 1106, 1115, 1181
HpyF3I CTNAG 7 cut(s) 117, 826, 1185, 1202, 1400, 1422, 1561
HpySE526I ACGT 5 cut(s) 746, 814, 1356, 1521, 1680
Hsp92II CATG 5 cut(s) 269, 277, 436, 844, 1616
KflI GGGWCCC 1 cut(s) 1457
Ksp22I TGATCA 1 cut(s) 1372
Kzo9I GATC 5 cut(s) 571, 1341, 1363, 1372, 1632
LmnI GCTCC 4 cut(s) 679, 1115, 1390, 1557
Lsp1109I GCAGC 5 cut(s) 101, 374, 1184, 1309, 1405
LweI GCATC 5 cut(s) 460, 534, 613, 826, 1694
MaeI CTAG 1 cut(s) 1695
MaeII ACGT 5 cut(s) 746, 814, 1356, 1521, 1680
MaeIII GTNAC 6 cut(s) 227, 299, 760, 1469, 1517, 1533
MalI GATC 5 cut(s) 573, 1343, 1365, 1374, 1634
MboI GATC 5 cut(s) 571, 1341, 1363, 1372, 1632
MboII GAAGA 2 cut(s) 1635, 1642
MhlI GDGCHC 3 cut(s) 480, 1335, 1562
MluCI AATT 9 cut(s) 233, 255, 421, 976, 1033, 1045, 1083, 1349, 1673
MlyI GAGTC 2 cut(s) 1268, 1574
MmeI TCCRAC 1 cut(s) 688
MseI TTAA 6 cut(s) 161, 173, 1104, 1143, 1500, 1717
MspI CCGG 2 cut(s) 1223, 1515
MspR9I CCNGG 2 cut(s) 809, 1224
Mva1269I GAATGC 1 cut(s) 1411
MvaI CCWGG 1 cut(s) 809
MwoI GCNNNNNNNGC 5 cut(s) 623, 940, 1106, 1115, 1181
NciI CCSGG 1 cut(s) 1224
NcoI CCATGG 1 cut(s) 1612
NdeII GATC 5 cut(s) 571, 1341, 1363, 1372, 1632
NlaIII CATG 5 cut(s) 269, 277, 436, 844, 1616
NlaIV GGNNCC 3 cut(s) 675, 1458, 1459
NmeAIII GCCGAG 1 cut(s) 499
NmuCI GTSAC 2 cut(s) 299, 1517
NspI RCATGY 1 cut(s) 277
PceI AGGCCT 1 cut(s) 1601
PctI GAATGC 1 cut(s) 1411
PfeI GAWTC 7 cut(s) 218, 416, 609, 902, 1426, 1434, 1655
PinAI ACCGGT 1 cut(s) 1514
PkrI GCNGC 5 cut(s) 91, 364, 1174, 1324, 1395
PleI GAGTC 2 cut(s) 1267, 1574
PpsI GAGTC 2 cut(s) 1267, 1574
PpuMI RGGWCCY 1 cut(s) 1457
PsiI TTATAA 3 cut(s) 149, 392, 1092
Psp124BI GAGCTC 2 cut(s) 480, 1562
Psp5II RGGWCCY 1 cut(s) 1457
Psp6I CCWGG 1 cut(s) 807
PspGI CCWGG 1 cut(s) 807
PspN4I GGNNCC 3 cut(s) 675, 1458, 1459
PspPI GGNCC 2 cut(s) 429, 1457
PspPPI RGGWCCY 1 cut(s) 1457
PstNI CAGNNNCTG 2 cut(s) 383, 833
RsaI GTAC 3 cut(s) 831, 911, 1190
RsaNI GTAC 3 cut(s) 830, 910, 1189
SacI GAGCTC 2 cut(s) 480, 1562
SaqAI TTAA 6 cut(s) 161, 173, 1104, 1143, 1500, 1717
SatI GCNGC 5 cut(s) 90, 363, 1173, 1323, 1394
Sau3AI GATC 5 cut(s) 571, 1341, 1363, 1372, 1632
Sau96I GGNCC 2 cut(s) 429, 1457
SchI GAGTC 2 cut(s) 1268, 1574
ScrFI CCNGG 2 cut(s) 809, 1224
SduI GDGCHC 3 cut(s) 480, 1335, 1562
SfaNI GCATC 5 cut(s) 460, 534, 613, 826, 1694
SfcI CTRYAG 1 cut(s) 206
SinI GGWCC 2 cut(s) 429, 1457
SmlI CTYRAG 2 cut(s) 437, 1256
SmoI CTYRAG 2 cut(s) 437, 1256
Sse9I AATT 9 cut(s) 233, 255, 421, 976, 1033, 1045, 1083, 1349, 1673
SseBI AGGCCT 1 cut(s) 1601
SsiI CCGC 2 cut(s) 263, 413
SspI AATATT 1 cut(s) 1273
SspMI CTAG 1 cut(s) 1695
SstI GAGCTC 2 cut(s) 480, 1562
StuI AGGCCT 1 cut(s) 1601
StyD4I CCNGG 2 cut(s) 807, 1222
StyI CCWWGG 4 cut(s) 600, 1462, 1612, 1662
TaaI ACNGT 2 cut(s) 454, 540
TaiI ACGT 5 cut(s) 749, 817, 1359, 1524, 1683
TaqI TCGA 2 cut(s) 253, 486
TasI AATT 9 cut(s) 233, 255, 421, 976, 1033, 1045, 1083, 1349, 1673
TfiI GAWTC 7 cut(s) 218, 416, 609, 902, 1426, 1434, 1655
Tru1I TTAA 6 cut(s) 161, 173, 1104, 1143, 1500, 1717
Tru9I TTAA 6 cut(s) 161, 173, 1104, 1143, 1500, 1717
TseFI GTSAC 2 cut(s) 299, 1517
TseI GCWGC 5 cut(s) 89, 362, 1172, 1322, 1393
Tsp45I GTSAC 2 cut(s) 299, 1517
TspDTI ATGAA 4 cut(s) 17, 797, 1182, 1506
VpaK11BI GGWCC 2 cut(s) 429, 1457
XapI RAATTY 5 cut(s) 233, 255, 976, 1033, 1045
XceI RCATGY 1 cut(s) 277
XspI CTAG 1 cut(s) 1695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.