RLG00000015061

Endo-1,4-beta-xylanase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
61113322 .. 61116348
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015061

Sequence Viewer

Length: 1725 bp
ATGAAGCTTGAGGGAAAATATAGTCTGCTTATGCTGTTATGTGCATTTGTTTTTGCAGTGTTTGAAGTATCAGCATTACCGTATGATTACTCGGCAAGTATTGAGTGTTTGGTCAATCCTCAGAAACCCCAATATGGTGGAGGGATCATCATAAACCCGGAATTAGATGATGGGTTGAAAGGATGGTCTATTTTTGGCAATGCAAAACTACAACACATAGAATCACAAGGCAACAAATTCCTTGTGGCTCATAGTAGAACGCAACCTCATGACAGTATGTCTCAAAAGGTTTACTTGCAAAGTGACAAGCTCTACACATTTTCTGCTTGGATAAAAGTGAGTACTGGTAGTGACGTTCCAGTAGCAGCTACTTTCAAGACAGCTTCTGGATTCAAACGTGCTGGTGAGATCATTGCAGAATCAAATTGTTGGTCCATGCTCAAGGGTGGTCTAACAGTTGAAGCTTCATTCTCTGCGGAGCTCTATTTTGAGAGCAAGAACACCTCCGTTGAGATCTGGGTTGACAGCATCTCATTGCAAGCATTCACCGAAAAGGAATGGAAGTCTCATCAAGATCGAAGCATTGCCAAGAATCGTAAGAGCAAAGTGCACATCCAAGCAGTTGATGCAGAAGGAATTCCTCTGCCAAATGCAACTATCTCCATCCAACAAAAAGTTCCAAGTTTCCCTTTTGGTTGTTCCATTACCAAGCTCATCCTCAACAACCCTGCCCACCAAAATTGGTTCACGTCAAGGTTCACAGTAACAACATTTGGGGATGAAATGAAATGGTACAGTACAGAGAGTATCCAGGGACGTGAGGACTACTCAGTAGCTGATGCCATGCTTCAGTTTGCAGAAGAAAACAACATTGCAGTCAGAGGCCACAATGTGTTCTGGGATGATCCGCAATACCAACTCAGTTGGGTCAAATCACTCGATACACATCAACTTATTAATGCAACTTACAAGAGGCTAAATTCTATCATGCAGAGATATAAAAGCAAGCTCATTGCCTGGGATGTTGTTAACGAAAATTTACAATGGAATTTCTTTGAAAGCAGGATGGGTGCAAATGCTTCAACAATTTTTTATAACTGGGCTATTAAAGCTGATGGAGAAACCCCCTTGTTCCTGAATGATTTTAATACCATTGAAGAGAGCAGAGATGGAGCATCCATGCCGGCTATGTACCTTCGAAAGCTCAGAGAGATTCAGAGCTTCCCAGGCAACAGTGGAGGACGGTTTGGGATTGGGCTTGAATCTCACTTCAATAGTAGTACTCCAAACCTTCCTTACATAAGAGCTTCTCTCGATACCCTTGGTGTTGCAAATGTGCCCATTTGGATCACTGAATTGGACGTGGCAAGCCATCTCGATCAGCCATTTTACTTGGAGCAGGTTCTAAGAGAGTTGCATTCTCACCCTCATATTCAAGGAATCATTATGTGGGCTGGACGGGGACCGAAAGGATGTTACAGAATGTGTTTGACAGATGAAAACTTCAACAACTTGCCAACTGGTGACGTTGTGGACAAGTTACTGCAGGAATGGGATTATAGGAGGTCGGCTTCTTTCACAGCAGATGCCAATGGTTTCTTCGAGGCGTCTCTTCCCCATGGAGATTTTGACATGAAGATCAGCCATTCTTCAGCGACGCATTCCTCCATGGTTCACAAATTGAATGTGGCATCAATTACTATGTCTCATCAACTTTCTGTTTGA

Protein Analysis

575

Amino Acids

64.65

Weight (kDa)

5.99

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBM_4_9 PF02018 49 - 168 5.8e-09 Carbohydrate binding domain
Glyco_hydro_10 PF00331 229 - 485 7.5e-37 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1095
Acc36I ACCTGC 1 cut(s) 1390
AciI CCGC 2 cut(s) 476, 908
AclWI GGATC 3 cut(s) 152, 899, 1355
AcsI RAATTY 5 cut(s) 236, 636, 979, 1036, 1048
AcuI CTGAAG 2 cut(s) 833, 1635
AcyI GRCGYC 1 cut(s) 1607
AdeI CACNNNGTG 1 cut(s) 892
AfaI GTAC 5 cut(s) 343, 794, 799, 1193, 1282
AfiI CCNNNNNNNGG 1 cut(s) 134
AhdI GACNNNNNGTC 1 cut(s) 277
AjiI CACGTC 3 cut(s) 750, 818, 1363
AjnI CCWGG 3 cut(s) 810, 1016, 1225
AjuI GAANNNNNNNTTGG 4 cut(s) 660, 692, 1583, 1615
Alw21I GWGCWC 2 cut(s) 483, 612
Alw26I GTCTC 4 cut(s) 285, 570, 1614, 1710
Alw44I GTGCAC 1 cut(s) 608
AlwI GGATC 3 cut(s) 152, 899, 1355
AlwNI CAGNNNCTG 2 cut(s) 386, 836
AoxI GGCC 1 cut(s) 883
ApaLI GTGCAC 1 cut(s) 608
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 5 cut(s) 236, 636, 979, 1036, 1048
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
AseI ATTAAT 1 cut(s) 957
Asp700I GAANNNNTTC 1 cut(s) 636
AspS9I GGNCC 2 cut(s) 432, 1463
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 4 cut(s) 416, 538, 1415, 1535
AsuII TTCGAA 1 cut(s) 1198
AvaII GGWCC 2 cut(s) 432, 1463
BaeGI GKGCMC 2 cut(s) 612, 1341
BanII GRGCYC 1 cut(s) 483
Bbv12I GWGCWC 2 cut(s) 483, 612
BbvI GCAGC 1 cut(s) 377
BccI CCATC 7 cut(s) 164, 177, 671, 1060, 1109, 1163, 1380
BciT130I CCWGG 3 cut(s) 812, 1018, 1227
BciVI GTATCC 1 cut(s) 818
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 4 cut(s) 285, 570, 1614, 1710
BfmI CTRYAG 1 cut(s) 1544
BfuAI ACCTGC 1 cut(s) 1390
BfuI GTATCC 1 cut(s) 818
BglII AGATCT 1 cut(s) 513
BisI GCNGC 1 cut(s) 366
BlsI GCNGC 1 cut(s) 367
BmcAI AGTACT 2 cut(s) 343, 1282
Bme1390I CCNGG 4 cut(s) 158, 812, 1018, 1227
Bme18I GGWCC 2 cut(s) 432, 1463
BmeRI GACNNNNNGTC 1 cut(s) 277
BmgBI CACGTC 3 cut(s) 750, 818, 1363
BmgT120I GGNCC 2 cut(s) 432, 1463
BmiI GGNNCC 1 cut(s) 1464
BmrFI CCNGG 4 cut(s) 158, 812, 1018, 1227
BmrI ACTGGG 1 cut(s) 1108
BmsI GCATC 6 cut(s) 537, 616, 829, 1184, 1576, 1700
BmuI ACTGGG 1 cut(s) 1108
BplI GAGNNNNNCTC 4 cut(s) 812, 844, 1296, 1328
Bpu14I TTCGAA 1 cut(s) 1198
BpuEI CTTGAG 2 cut(s) 29, 425
BpuMI CCSGG 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 945
BsaHI GRCGYC 1 cut(s) 1607
BsaJI CCNNGG 6 cut(s) 811, 1017, 1225, 1321, 1618, 1668
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse118I RCCGGY 1 cut(s) 1183
Bse1I ACTGG 4 cut(s) 349, 359, 1103, 1525
Bse3DI GCAATG 6 cut(s) 205, 411, 533, 582, 870, 1011
Bse8I GATNNNNATC 1 cut(s) 945
BseBI CCWGG 3 cut(s) 812, 1018, 1227
BseDI CCNNGG 6 cut(s) 811, 1017, 1225, 1321, 1618, 1668
BseJI GATNNNNATC 1 cut(s) 945
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMI GCAATG 6 cut(s) 205, 411, 533, 582, 870, 1011
BseMII CTCAG 4 cut(s) 134, 843, 934, 1219
BseNI ACTGG 4 cut(s) 349, 359, 1103, 1525
BseSI GKGCMC 2 cut(s) 612, 1341
BseXI GCAGC 1 cut(s) 377
BshFI GGCC 1 cut(s) 885
BsiHKAI GWGCWC 2 cut(s) 483, 612
BsiSI CCGG 2 cut(s) 158, 1184
BslFI GGGAC 2 cut(s) 828, 1476
BslI CCNNNNNNNGG 1 cut(s) 134
BsmAI GTCTC 4 cut(s) 285, 570, 1614, 1710
BsmBI CGTCTC 1 cut(s) 1614
BsmFI GGGAC 2 cut(s) 828, 1476
BsmI GAATGC 3 cut(s) 542, 1417, 1660
BsnI GGCC 1 cut(s) 885
Bsp119I TTCGAA 1 cut(s) 1198
Bsp1286I GDGCHC 3 cut(s) 483, 612, 1341
Bsp143I GATC 8 cut(s) 144, 408, 513, 574, 904, 1347, 1378, 1638
Bsp19I CCATGG 2 cut(s) 1618, 1668
BspACI CCGC 2 cut(s) 476, 908
BspANI GGCC 1 cut(s) 885
BspCNI CTCAG 4 cut(s) 133, 842, 933, 1218
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 1464
BspMAI CTGCAG 1 cut(s) 1548
BspMI ACCTGC 1 cut(s) 1390
BspPI GGATC 3 cut(s) 152, 899, 1355
BspT104I TTCGAA 1 cut(s) 1198
BsrDI GCAATG 6 cut(s) 205, 411, 533, 582, 870, 1011
BsrFI RCCGGY 1 cut(s) 1183
BsrI ACTGG 4 cut(s) 349, 359, 1103, 1525
BssAI RCCGGY 1 cut(s) 1183
BssECI CCNNGG 6 cut(s) 811, 1017, 1225, 1321, 1618, 1668
BssMI GATC 8 cut(s) 144, 408, 513, 574, 904, 1347, 1378, 1638
BssNI GRCGYC 1 cut(s) 1607
BssT1I CCWWGG 3 cut(s) 1321, 1618, 1668
Bst2UI CCWGG 3 cut(s) 812, 1018, 1227
Bst4CI ACNGT 7 cut(s) 81, 275, 457, 763, 797, 1235, 1245
Bst6I CTCTTC 2 cut(s) 1152, 1617
BstACI GRCGYC 1 cut(s) 1607
BstAPI GCANNNNNTGC 1 cut(s) 626
BstBI TTCGAA 1 cut(s) 1198
BstC8I GCNNGC 4 cut(s) 540, 1007, 1185, 1369
BstDEI CTNAG 5 cut(s) 120, 829, 920, 1205, 1406
BstDSI CCRYGG 2 cut(s) 1618, 1668
BstKTI GATC 8 cut(s) 147, 411, 516, 577, 907, 1350, 1381, 1641
BstMAI GTCTC 4 cut(s) 285, 570, 1614, 1710
BstMBI GATC 8 cut(s) 144, 408, 513, 574, 904, 1347, 1378, 1638
BstMWI GCNNNNNNNGC 3 cut(s) 626, 1109, 1227
BstNI CCWGG 3 cut(s) 812, 1018, 1227
BstSCI CCNGG 4 cut(s) 156, 810, 1016, 1225
BstSFI CTRYAG 1 cut(s) 1544
BstSLI GKGCMC 2 cut(s) 612, 1341
BstV1I GCAGC 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 513
BstXI CCANNNNNNTGG 1 cut(s) 137
BstYI RGATCY 1 cut(s) 513
BsuI GTATCC 1 cut(s) 818
BsuRI GGCC 1 cut(s) 885
BtgI CCRYGG 2 cut(s) 1618, 1668
BtrI CACGTC 3 cut(s) 750, 818, 1363
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 3 cut(s) 63, 1240, 1350
BveI ACCTGC 1 cut(s) 1390
Cac8I GCNNGC 4 cut(s) 540, 1007, 1185, 1369
CaiI CAGNNNCTG 2 cut(s) 386, 836
CciI TCATGA 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 1183
Cfr13I GGNCC 2 cut(s) 432, 1463
CseI GACGC 2 cut(s) 1596, 1666
Csp6I GTAC 5 cut(s) 342, 793, 798, 1192, 1281
CspCI CAANNNNNGTGG 2 cut(s) 722, 757
CviAII CATG 8 cut(s) 269, 436, 844, 988, 1180, 1619, 1633, 1669
CviQI GTAC 5 cut(s) 342, 793, 798, 1192, 1281
DdeI CTNAG 5 cut(s) 120, 829, 920, 1205, 1406
DpnI GATC 8 cut(s) 146, 410, 515, 576, 906, 1349, 1380, 1640
DpnII GATC 8 cut(s) 144, 408, 513, 574, 904, 1347, 1378, 1638
DraIII CACNNNGTG 1 cut(s) 892
DriI GACNNNNNGTC 1 cut(s) 277
Eam1104I CTCTTC 2 cut(s) 1152, 1617
Eam1105I GACNNNNNGTC 1 cut(s) 277
EarI CTCTTC 2 cut(s) 1152, 1617
Ecl136II GAGCTC 1 cut(s) 481
Eco130I CCWWGG 3 cut(s) 1321, 1618, 1668
Eco24I GRGCYC 1 cut(s) 483
Eco47I GGWCC 2 cut(s) 432, 1463
Eco53kI GAGCTC 1 cut(s) 481
Eco57I CTGAAG 2 cut(s) 833, 1635
EcoICRI GAGCTC 1 cut(s) 481
EcoRI GAATTC 1 cut(s) 636
EcoRII CCWGG 3 cut(s) 810, 1016, 1225
EcoT14I CCWWGG 3 cut(s) 1321, 1618, 1668
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 3 cut(s) 1321, 1618, 1668
Esp3I CGTCTC 1 cut(s) 1614
FaeI CATG 8 cut(s) 272, 439, 847, 991, 1183, 1622, 1636, 1672
FalI AAGNNNNNCTT 4 cut(s) 278, 310, 673, 705
FaqI GGGAC 2 cut(s) 828, 1476
FatI CATG 8 cut(s) 268, 435, 843, 987, 1179, 1618, 1632, 1668
Fnu4HI GCNGC 1 cut(s) 366
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 1 cut(s) 366
GluI GCNGC 1 cut(s) 366
HaeIII GGCC 1 cut(s) 885
HapII CCGG 2 cut(s) 158, 1184
HgaI GACGC 2 cut(s) 1596, 1666
Hin1I GRCGYC 1 cut(s) 1607
Hin1II CATG 8 cut(s) 272, 439, 847, 991, 1183, 1622, 1636, 1672
HincII GTYRAC 2 cut(s) 523, 1030
HindII GTYRAC 2 cut(s) 523, 1030
HindIII AAGCTT 2 cut(s) 5, 462
HinfI GANTC 7 cut(s) 221, 390, 419, 592, 1213, 1262, 1440
HpaI GTTAAC 1 cut(s) 1030
HpaII CCGG 2 cut(s) 158, 1184
HphI GGTGA 4 cut(s) 416, 538, 1415, 1535
Hpy166II GTNNAC 8 cut(s) 292, 523, 610, 747, 759, 1030, 1534, 1675
Hpy188I TCNGA 4 cut(s) 123, 881, 1208, 1218
Hpy188III TCNNGA 7 cut(s) 269, 376, 387, 572, 1135, 1313, 1376
Hpy8I GTNNAC 8 cut(s) 292, 523, 610, 747, 759, 1030, 1534, 1675
Hpy99I CGWCG 1 cut(s) 1660
HpyAV CCTTC 3 cut(s) 626, 1205, 1301
HpyCH4III ACNGT 7 cut(s) 81, 275, 457, 763, 797, 1235, 1245
HpyCH4IV ACGT 6 cut(s) 354, 397, 749, 817, 1362, 1527
HpyF10VI GCNNNNNNNGC 3 cut(s) 626, 1109, 1227
HpyF3I CTNAG 5 cut(s) 120, 829, 920, 1205, 1406
HpySE526I ACGT 6 cut(s) 354, 397, 749, 817, 1362, 1527
Hsp92I GRCGYC 1 cut(s) 1607
Hsp92II CATG 8 cut(s) 272, 439, 847, 991, 1183, 1622, 1636, 1672
KroI GCCGGC 1 cut(s) 1183
KroNI GCCGGC 1 cut(s) 1185
KspAI GTTAAC 1 cut(s) 1030
Kzo9I GATC 8 cut(s) 144, 408, 513, 574, 904, 1347, 1378, 1638
LmnI GCTCC 3 cut(s) 478, 1172, 1396
Lsp1109I GCAGC 1 cut(s) 377
LweI GCATC 6 cut(s) 537, 616, 829, 1184, 1576, 1700
MaeII ACGT 6 cut(s) 354, 397, 749, 817, 1362, 1527
MaeIII GTNAC 6 cut(s) 302, 350, 763, 1475, 1523, 1539
MalI GATC 8 cut(s) 146, 410, 515, 576, 906, 1349, 1380, 1640
MboI GATC 8 cut(s) 144, 408, 513, 574, 904, 1347, 1378, 1638
MboII GAAGA 6 cut(s) 872, 1169, 1591, 1604, 1641, 1648
MflI RGATCY 1 cut(s) 513
MhlI GDGCHC 3 cut(s) 483, 612, 1341
MmeI TCCRAC 1 cut(s) 691
MroNI GCCGGC 1 cut(s) 1183
MroXI GAANNNNTTC 1 cut(s) 636
MseI TTAA 4 cut(s) 957, 1029, 1107, 1146
MspI CCGG 2 cut(s) 158, 1184
MspR9I CCNGG 4 cut(s) 158, 812, 1018, 1227
Mva1269I GAATGC 3 cut(s) 542, 1417, 1660
MvaI CCWGG 3 cut(s) 812, 1018, 1227
MwoI GCNNNNNNNGC 3 cut(s) 626, 1109, 1227
NaeI GCCGGC 1 cut(s) 1185
NciI CCSGG 1 cut(s) 158
NcoI CCATGG 2 cut(s) 1618, 1668
NdeII GATC 8 cut(s) 144, 408, 513, 574, 904, 1347, 1378, 1638
NgoMIV GCCGGC 1 cut(s) 1183
NlaIII CATG 8 cut(s) 272, 439, 847, 991, 1183, 1622, 1636, 1672
NlaIV GGNNCC 1 cut(s) 1464
NmeAIII GCCGAG 1 cut(s) 71
NmuCI GTSAC 3 cut(s) 302, 350, 1523
NspV TTCGAA 1 cut(s) 1198
PagI TCATGA 1 cut(s) 268
PctI GAATGC 3 cut(s) 542, 1417, 1660
PdiI GCCGGC 1 cut(s) 1185
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 7 cut(s) 221, 390, 419, 592, 1213, 1262, 1440
PkrI GCNGC 1 cut(s) 367
PshBI ATTAAT 1 cut(s) 957
PsiI TTATAA 1 cut(s) 1095
Psp124BI GAGCTC 1 cut(s) 483
Psp6I CCWGG 3 cut(s) 810, 1016, 1225
PspGI CCWGG 3 cut(s) 810, 1016, 1225
PspN4I GGNNCC 1 cut(s) 1464
PspPI GGNCC 2 cut(s) 432, 1463
PstI CTGCAG 1 cut(s) 1548
PstNI CAGNNNCTG 2 cut(s) 386, 836
PsuI RGATCY 1 cut(s) 513
RsaI GTAC 5 cut(s) 343, 794, 799, 1193, 1282
RsaNI GTAC 5 cut(s) 342, 793, 798, 1192, 1281
SacI GAGCTC 1 cut(s) 483
SaqAI TTAA 4 cut(s) 957, 1029, 1107, 1146
SatI GCNGC 1 cut(s) 366
Sau3AI GATC 8 cut(s) 144, 408, 513, 574, 904, 1347, 1378, 1638
Sau96I GGNCC 2 cut(s) 432, 1463
ScaI AGTACT 2 cut(s) 343, 1282
ScrFI CCNGG 4 cut(s) 158, 812, 1018, 1227
SduI GDGCHC 3 cut(s) 483, 612, 1341
SfaNI GCATC 6 cut(s) 537, 616, 829, 1184, 1576, 1700
SfcI CTRYAG 1 cut(s) 1544
SfuI TTCGAA 1 cut(s) 1198
SinI GGWCC 2 cut(s) 432, 1463
SmlI CTYRAG 2 cut(s) 8, 440
SmoI CTYRAG 2 cut(s) 8, 440
SsiI CCGC 2 cut(s) 476, 908
SstI GAGCTC 1 cut(s) 483
StyD4I CCNGG 4 cut(s) 156, 810, 1016, 1225
StyI CCWWGG 3 cut(s) 1321, 1618, 1668
TaaI ACNGT 7 cut(s) 81, 275, 457, 763, 797, 1235, 1245
TaiI ACGT 6 cut(s) 357, 400, 752, 820, 1365, 1530
TaqI TCGA 6 cut(s) 577, 939, 1198, 1314, 1377, 1602
TaqII GACCGA 1 cut(s) 1480
TatI WGTACW 3 cut(s) 341, 797, 1280
TfiI GAWTC 7 cut(s) 221, 390, 419, 592, 1213, 1262, 1440
Tru1I TTAA 4 cut(s) 957, 1029, 1107, 1146
Tru9I TTAA 4 cut(s) 957, 1029, 1107, 1146
TscAI CASTG 3 cut(s) 63, 1240, 1357
TseFI GTSAC 3 cut(s) 302, 350, 1523
TseI GCWGC 1 cut(s) 365
Tsp45I GTSAC 3 cut(s) 302, 350, 1523
TspDTI ATGAA 6 cut(s) 17, 456, 795, 800, 1512, 1649
TspGWI ACGGA 1 cut(s) 496
TspRI CASTG 3 cut(s) 63, 1240, 1357
VneI GTGCAC 1 cut(s) 608
VpaK11BI GGWCC 2 cut(s) 432, 1463
VspI ATTAAT 1 cut(s) 957
XapI RAATTY 5 cut(s) 236, 636, 979, 1036, 1048
XmnI GAANNNNTTC 1 cut(s) 636
ZrmI AGTACT 2 cut(s) 343, 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.