Rw6G004970

Endo-1,4-beta-xylanase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
8150456 .. 8161560
11105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G004970.1

Sequence Viewer

Length: 1488 bp
ATGAAGTCCTTAAAAATCCTAATTGAATACCTCAAAATTTTCATAGATTGGACGTTGGAAGTAAATGGTTTATCCTATGATTACACAGCCAGTATTAAGGGGTCATTAATTGTAAACCCGGAATTAAATGAAGGCTTGAAAGGGTGGTCTACTTTCGGCAATGCAACAATAGAACTTCGAAATTCCGAAAACAATAGTTTCATAGTGGCTCATAGCAGAAATCAACCACATGACAGTTTTTTTCAGAAGGTTCACTCGGAAATTCATAACAATGATAGCGACGTTCCGGTAACAGCTGTTTTTAACGCATCTACTGGATTCATTCATGCTGGCGCAACTATTGCGGAATCAAATTGTTGGACCTTGCTCAAGGGTGGCCTAACCATGAATGCCTCAGGCCCTGCCGAGCTCTATTTTGAGAGCGAAAACACAACGGTCGAAATTTGGGTTGATAGCATCTCTTTACAACCTTTCACCCAGGAGCAGTGGAAGTCTCATCAAGATCAAACCATTGAAAAGATTCGTAAGAGCAAGGTGAAATTCCAAGCAGTTGATACGCAGGGAACCCCTTTACCAAATGCTACAATCTCTATCAAACAAAAGGCAGGAGGTTTCCCATTTGGGTGTGCTATGAACAATCACATTCTCTCCAACACTGCGTACCAAAATTGGTTCACATCAAGATTCAGAGTGACAACATTCGAAAACGAAATGAAATGGTATAGCACAGAAACTTCTGAGGGACATCAGAACTACTCCGTCCCTGCTGCCATGCTTTGCTTTCAGCACAACATTGCAGTAAGAGGTCACAATATTTTCTGGGATCCACAGTATCAACAAGGCTGGGTCAAATCACTCCATACGATACAAATCACCATGGACAGACACAAGGGCAAACTCATTGCCCGGGATGTTGTTAGCGAAAATTTGCATTTTGATTTCTTTGAAACTGATGGAGCAACCCCTTTATTCTTGAATGATTTCAATACCATTGAGGATAGCAGAGACTGGAAAGCCTCGCCAAAAGCGTACATTAACAGGCTTCTGAGGATTAAAAGGGTAAAGGATAATTTCAGAGGCCGATTCGGGATTGGACCAGGCCTTCTATTGAGTATTGATTATCTTGCCACCGCGAAAGTGCCCATTTGGATTACAGAATTGTGTGCATGGTACTTGGAGCAGATTCTAAGGGAGGTACATTCTCACCCACAAATTCAAGGAATTGTGATTTGGTCTGCATGGCAACCTCAAGGATGTTACAGAATGTGCTTAACCGATTACAATTTCAATAACTTGGCCACTGGTAATGTTGTGGACAAGTTACTACATGAATGGGGTTTGTGGGCTTTCGATTCGACTTCTGCCACAACAGACGCTAATGGTTTCTTTGAGGCCTCACTCTTCCACGGGGATTATGAAGTTAACATTACTCACCCCTGTCACAAATTCCTCCTTGGTTCACAGATTCAATGTGGCACCAAAATCTGA

Protein Analysis

495

Amino Acids

56.34

Weight (kDa)

6.17

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_10 PF00331 203 - 311 3e-13 Glycosyl hydrolase family 10
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1475
AccI GTMKAC 1 cut(s) 149
AccII CGCG 1 cut(s) 1133
AciI CCGC 2 cut(s) 344, 1131
AclWI GGATC 2 cut(s) 818, 831
AcoI YGGCCR 1 cut(s) 1296
AcsI RAATTY 8 cut(s) 36, 181, 261, 441, 539, 925, 1212, 1445
AfaI GTAC 4 cut(s) 662, 1031, 1172, 1197
AgsI TTSAA 9 cut(s) 26, 139, 515, 947, 976, 985, 1217, 1288, 1469
AjnI CCWGG 2 cut(s) 477, 1096
AjuI GAANNNNNNNTTGG 2 cut(s) 1213, 1245
AluBI AGCT 2 cut(s) 296, 409
AluI AGCT 2 cut(s) 296, 409
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 2 cut(s) 498, 999
AlwI GGATC 2 cut(s) 818, 831
AlwNI CAGNNNCTG 2 cut(s) 401, 1008
Ama87I CYCGRG 1 cut(s) 906
AoxI GGCC 6 cut(s) 376, 397, 1078, 1099, 1296, 1392
ApeKI GCWGC 1 cut(s) 767
ApoI RAATTY 8 cut(s) 36, 181, 261, 441, 539, 925, 1212, 1445
AseI ATTAAT 1 cut(s) 107
Asp700I GAANNNNTTC 2 cut(s) 519, 980
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 3 cut(s) 360, 398, 1094
AsuC2I CCSGG 3 cut(s) 119, 907, 908
AsuHPI GGTGA 5 cut(s) 466, 547, 865, 1196, 1424
AsuII TTCGAA 2 cut(s) 178, 702
AvaI CYCGRG 1 cut(s) 906
AvaII GGWCC 2 cut(s) 360, 1094
AxyI CCTNAGG 1 cut(s) 394
BaeGI GKGCMC 1 cut(s) 1143
BalI TGGCCA 1 cut(s) 1298
BamHI GGATCC 1 cut(s) 823
BanI GGYRCC 1 cut(s) 1475
BanII GRGCYC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 754
BccI CCATC 1 cut(s) 947
BciT130I CCWGG 2 cut(s) 479, 1098
BcnI CCSGG 3 cut(s) 119, 907, 908
BcoDI GTCTC 2 cut(s) 498, 999
BisI GCNGC 1 cut(s) 768
BlsI GCNGC 1 cut(s) 769
Bme1390I CCNGG 5 cut(s) 119, 479, 907, 908, 1098
Bme18I GGWCC 2 cut(s) 360, 1094
BmeT110I CYCGRG 1 cut(s) 906
BmgT120I GGNCC 3 cut(s) 360, 398, 1094
BmiI GGNNCC 3 cut(s) 565, 825, 1477
BmrFI CCNGG 5 cut(s) 119, 479, 907, 908, 1098
BmsI GCATC 2 cut(s) 317, 465
Bpu14I TTCGAA 2 cut(s) 178, 702
BpuEI CTTGAG 2 cut(s) 353, 1233
BpuMI CCSGG 3 cut(s) 119, 907, 908
BsaBI GATNNNNATC 1 cut(s) 869
BsaJI CCNNGG 5 cut(s) 477, 876, 906, 1405, 1453
BsaWI WCCGGW 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bse1I ACTGG 4 cut(s) 90, 319, 1013, 1306
Bse21I CCTNAGG 1 cut(s) 394
Bse3DI GCAATG 3 cut(s) 166, 792, 900
Bse8I GATNNNNATC 1 cut(s) 869
BseBI CCWGG 2 cut(s) 479, 1098
BseDI CCNNGG 5 cut(s) 477, 876, 906, 1405, 1453
BseGI GGATG 2 cut(s) 916, 1259
BseJI GATNNNNATC 1 cut(s) 869
BseMI GCAATG 3 cut(s) 166, 792, 900
BseMII CTCAG 3 cut(s) 408, 729, 1037
BseNI ACTGG 4 cut(s) 90, 319, 1013, 1306
BseSI GKGCMC 1 cut(s) 1143
BseXI GCAGC 1 cut(s) 754
BseYI CCCAGC 1 cut(s) 843
Bsh1236I CGCG 1 cut(s) 1133
Bsh1285I CGRYCG 1 cut(s) 438
BshFI GGCC 6 cut(s) 378, 399, 1080, 1101, 1298, 1394
BshNI GGYRCC 1 cut(s) 1475
BsiEI CGRYCG 1 cut(s) 438
BsiHKAI GWGCWC 1 cut(s) 411
BsiHKCI CYCGRG 1 cut(s) 906
BsiSI CCGG 3 cut(s) 119, 287, 907
BslFI GGGAC 2 cut(s) 746, 756
BsmAI GTCTC 2 cut(s) 498, 999
BsmFI GGGAC 2 cut(s) 746, 756
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 6 cut(s) 378, 399, 1080, 1101, 1298, 1394
BsoBI CYCGRG 1 cut(s) 906
Bsp119I TTCGAA 2 cut(s) 178, 702
Bsp1286I GDGCHC 2 cut(s) 411, 1143
Bsp143I GATC 2 cut(s) 502, 823
Bsp19I CCATGG 1 cut(s) 876
BspACI CCGC 2 cut(s) 344, 1131
BspANI GGCC 6 cut(s) 378, 399, 1080, 1101, 1298, 1394
BspCNI CTCAG 3 cut(s) 407, 730, 1038
BspFNI CGCG 1 cut(s) 1133
BspLI GGNNCC 3 cut(s) 565, 825, 1477
BspPI GGATC 2 cut(s) 818, 831
BspT104I TTCGAA 2 cut(s) 178, 702
BspT107I GGYRCC 1 cut(s) 1475
BsrDI GCAATG 3 cut(s) 166, 792, 900
BsrI ACTGG 4 cut(s) 90, 319, 1013, 1306
BssECI CCNNGG 5 cut(s) 477, 876, 906, 1405, 1453
BssMI GATC 2 cut(s) 502, 823
BssT1I CCWWGG 2 cut(s) 876, 1453
Bst2UI CCWGG 2 cut(s) 479, 1098
Bst4CI ACNGT 3 cut(s) 236, 436, 831
Bst6I CTCTTC 1 cut(s) 1406
BstAPI GCANNNNNTGC 1 cut(s) 341
BstBI TTCGAA 2 cut(s) 178, 702
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 4 cut(s) 394, 738, 1046, 1187
BstDSI CCRYGG 2 cut(s) 876, 1405
BstF5I GGATG 2 cut(s) 916, 1259
BstFNI CGCG 1 cut(s) 1133
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 2 cut(s) 505, 826
BstMAI GTCTC 2 cut(s) 498, 999
BstMBI GATC 2 cut(s) 502, 823
BstMCI CGRYCG 1 cut(s) 438
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 2 cut(s) 479, 1098
BstSCI CCNGG 5 cut(s) 117, 477, 905, 906, 1096
BstSLI GKGCMC 1 cut(s) 1143
BstUI CGCG 1 cut(s) 1133
BstV1I GCAGC 1 cut(s) 754
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
Bsu36I CCTNAGG 1 cut(s) 394
BsuRI GGCC 6 cut(s) 378, 399, 1080, 1101, 1298, 1394
BtgI CCRYGG 2 cut(s) 876, 1405
BtsCI GGATG 2 cut(s) 916, 1259
BtsI GCAGTG 2 cut(s) 491, 654
BtsIMutI CAGTG 3 cut(s) 491, 654, 1299
Cac8I GCNNGC 1 cut(s) 331
CaiI CAGNNNCTG 2 cut(s) 401, 1008
CfoI GCGC 1 cut(s) 335
Cfr13I GGNCC 3 cut(s) 360, 398, 1094
Cfr9I CCCGGG 1 cut(s) 906
CseI GACGC 1 cut(s) 1382
Csp6I GTAC 4 cut(s) 661, 1030, 1171, 1196
CviAII CATG 8 cut(s) 230, 326, 385, 772, 877, 1167, 1239, 1328
CviQI GTAC 4 cut(s) 661, 1030, 1171, 1196
DdeI CTNAG 4 cut(s) 394, 738, 1046, 1187
DpnI GATC 2 cut(s) 504, 825
DpnII GATC 2 cut(s) 502, 823
EaeI YGGCCR 1 cut(s) 1296
Eam1104I CTCTTC 1 cut(s) 1406
EarI CTCTTC 1 cut(s) 1406
Ecl136II GAGCTC 1 cut(s) 409
Eco130I CCWWGG 2 cut(s) 876, 1453
Eco147I AGGCCT 2 cut(s) 1101, 1394
Eco24I GRGCYC 1 cut(s) 411
Eco47I GGWCC 2 cut(s) 360, 1094
Eco53kI GAGCTC 1 cut(s) 409
Eco81I CCTNAGG 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 906
EcoICRI GAGCTC 1 cut(s) 409
EcoO109I RGGNCCY 1 cut(s) 398
EcoRII CCWGG 2 cut(s) 477, 1096
EcoT14I CCWWGG 2 cut(s) 876, 1453
EcoT38I GRGCYC 1 cut(s) 411
ErhI CCWWGG 2 cut(s) 876, 1453
FaeI CATG 8 cut(s) 233, 329, 388, 775, 880, 1170, 1242, 1331
FaqI GGGAC 2 cut(s) 746, 756
FatI CATG 8 cut(s) 229, 325, 384, 771, 876, 1166, 1238, 1327
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 1 cut(s) 768
FokI GGATG 2 cut(s) 923, 1266
FriOI GRGCYC 1 cut(s) 411
Fsp4HI GCNGC 1 cut(s) 768
GlaI GCGC 1 cut(s) 334
GluI GCNGC 1 cut(s) 768
GsaI CCCAGC 1 cut(s) 847
HaeIII GGCC 6 cut(s) 378, 399, 1080, 1101, 1298, 1394
HapII CCGG 3 cut(s) 119, 287, 907
HgaI GACGC 1 cut(s) 1382
HhaI GCGC 1 cut(s) 335
Hin1II CATG 8 cut(s) 233, 329, 388, 775, 880, 1170, 1242, 1331
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HincII GTYRAC 1 cut(s) 1423
HindII GTYRAC 1 cut(s) 1423
HinfI GANTC 8 cut(s) 318, 347, 520, 684, 1083, 1183, 1352, 1465
HpaI GTTAAC 1 cut(s) 1423
HpaII CCGG 3 cut(s) 119, 287, 907
HphI GGTGA 5 cut(s) 466, 547, 865, 1196, 1424
Hpy166II GTNNAC 7 cut(s) 115, 150, 253, 675, 1315, 1423, 1460
Hpy188I TCNGA 9 cut(s) 187, 246, 259, 689, 739, 750, 1047, 1076, 1487
Hpy188III TCNNGA 4 cut(s) 500, 681, 973, 1087
Hpy8I GTNNAC 7 cut(s) 115, 150, 253, 675, 1315, 1423, 1460
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 3 cut(s) 125, 241, 1112
HpyCH4III ACNGT 3 cut(s) 236, 436, 831
HpyCH4IV ACGT 2 cut(s) 53, 282
HpyCH4V TGCA 5 cut(s) 164, 797, 931, 1166, 1238
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 4 cut(s) 394, 738, 1046, 1187
HpySE526I ACGT 2 cut(s) 53, 282
Hsp92II CATG 8 cut(s) 233, 329, 388, 775, 880, 1170, 1242, 1331
HspAI GCGC 1 cut(s) 333
KspAI GTTAAC 1 cut(s) 1423
Kzo9I GATC 2 cut(s) 502, 823
LmnI GCTCC 3 cut(s) 481, 956, 1177
Lsp1109I GCAGC 1 cut(s) 754
LweI GCATC 2 cut(s) 317, 465
MaeII ACGT 2 cut(s) 53, 282
MaeIII GTNAC 6 cut(s) 289, 691, 806, 1256, 1320, 1439
MalI GATC 2 cut(s) 504, 825
MboI GATC 2 cut(s) 502, 823
MboII GAAGA 1 cut(s) 1393
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 2 cut(s) 411, 1143
MlsI TGGCCA 1 cut(s) 1298
MluNI TGGCCA 1 cut(s) 1298
MmeI TCCRAC 3 cut(s) 36, 338, 675
Mox20I TGGCCA 1 cut(s) 1298
MroXI GAANNNNTTC 2 cut(s) 519, 980
MscI TGGCCA 1 cut(s) 1298
MseI TTAA 9 cut(s) 11, 96, 107, 125, 303, 1035, 1053, 1271, 1422
MslI CAYNNNNRTG 2 cut(s) 270, 622
Msp20I TGGCCA 1 cut(s) 1298
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 3 cut(s) 119, 287, 907
MspR9I CCNGG 5 cut(s) 119, 479, 907, 908, 1098
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 2 cut(s) 479, 1098
MvnI CGCG 1 cut(s) 1133
MwoI GCNNNNNNNGC 1 cut(s) 341
NciI CCSGG 3 cut(s) 119, 907, 908
NcoI CCATGG 1 cut(s) 876
NdeII GATC 2 cut(s) 502, 823
NlaIII CATG 8 cut(s) 233, 329, 388, 775, 880, 1170, 1242, 1331
NlaIV GGNNCC 3 cut(s) 565, 825, 1477
NmeAIII GCCGAG 1 cut(s) 430
NmuCI GTSAC 3 cut(s) 691, 806, 1439
NspV TTCGAA 2 cut(s) 178, 702
PceI AGGCCT 2 cut(s) 1101, 1394
PcsI WCGNNNNNNNCGW 1 cut(s) 1025
PctI GAATGC 1 cut(s) 394
PdmI GAANNNNTTC 2 cut(s) 519, 980
PfeI GAWTC 8 cut(s) 318, 347, 520, 684, 1083, 1183, 1352, 1465
PkrI GCNGC 1 cut(s) 769
PshBI ATTAAT 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 411
Psp6I CCWGG 2 cut(s) 477, 1096
PspFI CCCAGC 1 cut(s) 843
PspGI CCWGG 2 cut(s) 477, 1096
PspN4I GGNNCC 3 cut(s) 565, 825, 1477
PspPI GGNCC 3 cut(s) 360, 398, 1094
PstNI CAGNNNCTG 2 cut(s) 401, 1008
PsuI RGATCY 1 cut(s) 823
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 4 cut(s) 662, 1031, 1172, 1197
RsaNI GTAC 4 cut(s) 661, 1030, 1171, 1196
RseI CAYNNNNRTG 2 cut(s) 270, 622
SacI GAGCTC 1 cut(s) 411
SaqAI TTAA 9 cut(s) 11, 96, 107, 125, 303, 1035, 1053, 1271, 1422
SatI GCNGC 1 cut(s) 768
Sau3AI GATC 2 cut(s) 502, 823
Sau96I GGNCC 3 cut(s) 360, 398, 1094
ScrFI CCNGG 5 cut(s) 119, 479, 907, 908, 1098
SduI GDGCHC 2 cut(s) 411, 1143
SfaNI GCATC 2 cut(s) 317, 465
SfuI TTCGAA 2 cut(s) 178, 702
SinI GGWCC 2 cut(s) 360, 1094
SmaI CCCGGG 1 cut(s) 908
SmiMI CAYNNNNRTG 2 cut(s) 270, 622
SmlI CTYRAG 2 cut(s) 368, 1248
SmoI CTYRAG 2 cut(s) 368, 1248
SseBI AGGCCT 2 cut(s) 1101, 1394
SsiI CCGC 2 cut(s) 344, 1131
SspI AATATT 1 cut(s) 814
SstI GAGCTC 1 cut(s) 411
StuI AGGCCT 2 cut(s) 1101, 1394
StyD4I CCNGG 5 cut(s) 117, 477, 905, 906, 1096
StyI CCWWGG 2 cut(s) 876, 1453
TaaI ACNGT 3 cut(s) 236, 436, 831
TaiI ACGT 2 cut(s) 56, 285
TaqI TCGA 5 cut(s) 178, 438, 702, 1350, 1355
TfiI GAWTC 8 cut(s) 318, 347, 520, 684, 1083, 1183, 1352, 1465
Tru1I TTAA 9 cut(s) 11, 96, 107, 125, 303, 1035, 1053, 1271, 1422
Tru9I TTAA 9 cut(s) 11, 96, 107, 125, 303, 1035, 1053, 1271, 1422
TscAI CASTG 3 cut(s) 491, 661, 1306
TseFI GTSAC 3 cut(s) 691, 806, 1439
TseI GCWGC 1 cut(s) 767
Tsp45I GTSAC 3 cut(s) 691, 806, 1439
TspGWI ACGGA 1 cut(s) 748
TspMI CCCGGG 1 cut(s) 906
TspRI CASTG 3 cut(s) 491, 661, 1306
VpaK11BI GGWCC 2 cut(s) 360, 1094
VspI ATTAAT 1 cut(s) 107
XapI RAATTY 8 cut(s) 36, 181, 261, 441, 539, 925, 1212, 1445
XmaI CCCGGG 1 cut(s) 906
XmiI GTMKAC 1 cut(s) 149
XmnI GAANNNNTTC 2 cut(s) 519, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.