Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002751

Physical Location & Seq

Genomic Coordinates Reverse (-)

72748072 .. 72748395

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0539100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCTTGTAGTTTATAATTTACGGAGGATCCGCCACTGGCCTTATGGTGTCTGCAACGCCAACGATGATTTGCTGGTGTGCAAGTACATGAAGAGCATTCGACCTAAGAACCCTTCTGCATGGAGCTTGAGAGATGGCACCGAAGGATGTGAACGTGAGACAGAGCTGGAGTGTGGGAGTAAGGACAAGTTTATGAAGGTGGAGAATTTGAAGCTGCCGGAGAGCGGGGGAGCGGTGGTGGATATGGAGATGAGTTTGGAGGAGTGTGAGGTGAAGTGTTTGGGGAATTGCTTGTGTAGTGGGTTTTCAGAGTGCGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

107

Amino Acids

12.13

Weight (kDa)

4.95

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAN_2	PF08276	58 - 104	1.5e-11	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33830 AT4G33840 AT4G33860
fragaria_vesca	FvH4_2g03792 FvH4_2g03793 FvH4_2g03793 FvH4_2g03840 FvH4_3g40060
malus_domestica	MD05G1100700.v1.1 MD10G1105900.v1.1 MD10G1106500.v1.1
prunus_persica	Prupe.8G145100_v2.0.a1 Prupe.8G145200_v2.0.a1 Prupe.8G145300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072231 RchiOBHm_Chr6g0252841 RchiOBHm_Chr6g0252851
rosa_laevigata	RLG00000015059 RLG00000015061
rosa_multiflora	Rmu_co8129022.1_g000001 Rmu_sc0000714.1_g000002 Rmu_sc0000829.1_g000017 Rmu_sc0000829.1_g000029 Rmu_sc0028322.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212390
rosa_rugosa	Rorug05G0417000 Rorug05G0539100
rosa_samantha	Rh5DG505200 Rh6AG055100 Rh6BG049200 Rh6CG047900 Rh6CG048000 Rh6CG048100 Rh6DG043400 Rh6DG043600 Rh6DG043700
rosa_wichuraiana	Rw5G043950 Rw6G004970 Rw6G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	137
AccBSI	CCGCTC	2 cut(s)	225, 233
AciI	CCGC	3 cut(s)	31, 225, 233
AclWI	GGATC	2 cut(s)	22, 35
AcsI	RAATTY	1 cut(s)	205
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	3 cut(s)	126, 166, 214
AluI	AGCT	3 cut(s)	126, 166, 214
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	22, 35
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	283
BamHI	GGATCC	1 cut(s)	27
BanI	GGYRCC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	152
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
BmiI	GGNNCC	2 cut(s)	29, 139
BpmI	CTGGAG	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	201
BshFI	GGCC	1 cut(s)	40
BshNI	GGYRCC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	3 cut(s)	31, 225, 233
BspANI	GGCC	1 cut(s)	40
BspLI	GGNNCC	2 cut(s)	29, 139
BspPI	GGATC	2 cut(s)	22, 35
BspQI	GCTCTTC	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	137
BsrBI	CCGCTC	2 cut(s)	225, 233
BsrI	ACTGG	1 cut(s)	41
BssMI	GATC	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	152
BstKTI	GATC	1 cut(s)	30
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	2 cut(s)	88, 120
CviJI	RGCY	4 cut(s)	40, 126, 166, 214
CviKI_1	RGCY	4 cut(s)	40, 126, 166, 214
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EciI	GGCGGA	1 cut(s)	20
FaeI	CATG	2 cut(s)	91, 123
FaiI	YATR	6 cut(s)	15, 45, 89, 121, 194, 245
FatI	CATG	2 cut(s)	87, 119
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	1 cut(s)	215
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	215
GluI	GCNGC	1 cut(s)	215
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	1 cut(s)	218
Hin1II	CATG	2 cut(s)	91, 123
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	1 cut(s)	310
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	123, 137, 190
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	3 cut(s)	54, 81, 119
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	2 cut(s)	91, 123
Kzo9I	GATC	1 cut(s)	27
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	2 cut(s)	123, 230
LpnPI	CCDG	4 cut(s)	22, 59, 152, 231
Lsp1109I	GCAGC	1 cut(s)	201
MaeII	ACGT	1 cut(s)	154
MalI	GATC	1 cut(s)	29
MbiI	CCGCTC	2 cut(s)	225, 233
MboI	GATC	1 cut(s)	27
MboII	GAAGA	1 cut(s)	103
MflI	RGATCY	1 cut(s)	27
MluCI	AATT	3 cut(s)	16, 205, 286
MnlI	CCTC	4 cut(s)	18, 253, 262, 310
MspI	CCGG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	96
NdeII	GATC	1 cut(s)	27
NlaIII	CATG	2 cut(s)	91, 123
NlaIV	GGNNCC	2 cut(s)	29, 139
PciSI	GCTCTTC	1 cut(s)	86
PctI	GAATGC	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	216
PsiI	TTATAA	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	29, 139
PsuI	RGATCY	1 cut(s)	27
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	86
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	1 cut(s)	27
SetI	ASST	7 cut(s)	106, 128, 157, 168, 201, 216, 273
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	3 cut(s)	16, 205, 286
SsiI	CCGC	3 cut(s)	31, 225, 233
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	100
TasI	AATT	3 cut(s)	16, 205, 286
TatI	WGTACW	1 cut(s)	84
TscAI	CASTG	1 cut(s)	41
TseI	GCWGC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	104, 209
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.