Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000714.1

Orthogroup ID

OG0002751

Physical Location & Seq

Genomic Coordinates Forward (+)

6260 .. 6779

Gene Structure 520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000714.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgaaatggtacagcacagaaccttcacagggacaagaggactactcagtggctgatgccctgcttcagtttgctaaacaacagaacattgcagtcagaggccacaatgtgttctgggatgatcctcagtaccatctagctgatggagcaaccaccttgttcatgaatgaccacaataccattgaggagagcaaagatggagactccaccccggctaagtaccttcaaaagctcagagatatacaaggctttcccggtaacaacaacttaaggatgtcaataggacttgagtctcatttcaagactcctaagggcaactccaaccataggcaccatttgggggtgctattctcattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010383 GO:0010410 GO:0016052 GO:0016787 GO:0016798 GO:0031176 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044260 GO:0045491 GO:0045493 GO:0071554 GO:0071704 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_4_9 Glyco_hydro_10

Protein Analysis

119

Amino Acids

13.55

Weight (kDa)

6.12

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33830 AT4G33840 AT4G33860
fragaria_vesca	FvH4_2g03792 FvH4_2g03793 FvH4_2g03793 FvH4_2g03840 FvH4_3g40060
malus_domestica	MD05G1100700.v1.1 MD10G1105900.v1.1 MD10G1106500.v1.1
prunus_persica	Prupe.8G145100_v2.0.a1 Prupe.8G145200_v2.0.a1 Prupe.8G145300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0072231 RchiOBHm_Chr6g0252841 RchiOBHm_Chr6g0252851
rosa_laevigata	RLG00000015059 RLG00000015061
rosa_multiflora	Rmu_co8129022.1_g000001 Rmu_sc0000714.1_g000002 Rmu_sc0000829.1_g000017 Rmu_sc0000829.1_g000029 Rmu_sc0028322.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212390
rosa_rugosa	Rorug05G0417000 Rorug05G0539100
rosa_samantha	Rh5DG505200 Rh6AG055100 Rh6BG049200 Rh6CG047900 Rh6CG048000 Rh6CG048100 Rh6DG043400 Rh6DG043600 Rh6DG043700
rosa_wichuraiana	Rw5G043950 Rw6G004970 Rw6G004990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	330
AclWI	GGATC	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	50
AdeI	CACNNNGTG	1 cut(s)	109
AfaI	GTAC	3 cut(s)	11, 131, 221
AfiI	CCNNNNNNNGG	3 cut(s)	29, 327, 340
AflII	CTTAAG	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	227, 301
AluBI	AGCT	2 cut(s)	140, 232
AluI	AGCT	2 cut(s)	140, 232
Alw26I	GTCTC	2 cut(s)	195, 297
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	100
AsuC2I	CCSGG	2 cut(s)	212, 255
AxyI	CCTNAGG	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	330
BccI	CCATC	3 cut(s)	137, 141, 191
BcnI	CCSGG	2 cut(s)	212, 255
BcoDI	GTCTC	2 cut(s)	195, 297
BfaI	CTAG	1 cut(s)	137
BfrI	CTTAAG	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	212, 255
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	2 cut(s)	212, 255
BmsI	GCATC	1 cut(s)	46
BoxI	GACNNNNGTC	1 cut(s)	289
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	2 cut(s)	212, 255
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 327, 340
Bse21I	CCTNAGG	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	124, 279
BseLI	CCNNNNNNNGG	3 cut(s)	29, 327, 340
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	3 cut(s)	60, 140, 247
BseRI	GAGGAG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	212, 255
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	29, 327, 340
BsmAI	GTCTC	2 cut(s)	195, 297
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	3 cut(s)	59, 139, 246
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	330
BspTI	CTTAAG	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	121
BstAFI	CTTAAG	1 cut(s)	268
BstDEI	CTNAG	5 cut(s)	46, 126, 216, 233, 309
BstF5I	GGATG	2 cut(s)	124, 279
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	2 cut(s)	195, 297
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstPAI	GACNNNNGTC	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	210, 253
Bsu36I	CCTNAGG	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	2 cut(s)	124, 279
BtsIMutI	CAGTG	1 cut(s)	54
CaiI	CAGNNNCTG	1 cut(s)	53
CciI	TCATGA	1 cut(s)	162
Csp6I	GTAC	3 cut(s)	10, 130, 220
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	6 cut(s)	53, 102, 140, 215, 232, 249
CviKI_1	RGCY	6 cut(s)	53, 102, 140, 215, 232, 249
CviQI	GTAC	3 cut(s)	10, 130, 220
DdeI	CTNAG	5 cut(s)	46, 126, 216, 233, 309
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
DraIII	CACNNNGTG	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	309
FaeI	CATG	1 cut(s)	166
FaiI	YATR	3 cut(s)	164, 242, 327
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	1 cut(s)	162
FokI	GGATG	2 cut(s)	131, 286
FspBI	CTAG	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	212, 255
Hin1II	CATG	1 cut(s)	166
HinfI	GANTC	3 cut(s)	203, 290, 304
HpaII	CCGG	2 cut(s)	212, 255
Hpy188I	TCNGA	2 cut(s)	98, 236
Hpy188III	TCNNGA	2 cut(s)	163, 301
HpyAV	CCTTC	2 cut(s)	33, 233
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	5 cut(s)	46, 126, 216, 233, 309
Hsp92II	CATG	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	5 cut(s)	14, 74, 100, 225, 268
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MlyI	GAGTC	3 cut(s)	197, 298, 299
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	4 cut(s)	31, 92, 135, 178
MseI	TTAA	1 cut(s)	269
MspCI	CTTAAG	1 cut(s)	268
MspI	CCGG	2 cut(s)	212, 255
MspR9I	CCNGG	2 cut(s)	212, 255
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	2 cut(s)	212, 255
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	332
PagI	TCATGA	1 cut(s)	162
PleI	GAGTC	3 cut(s)	197, 298, 298
PpsI	GAGTC	3 cut(s)	197, 298, 298
PshAI	GACNNNNGTC	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	332
PstNI	CAGNNNCTG	1 cut(s)	53
RsaI	GTAC	3 cut(s)	11, 131, 221
RsaNI	GTAC	3 cut(s)	10, 130, 220
SaqAI	TTAA	1 cut(s)	269
Sau3AI	GATC	1 cut(s)	121
SchI	GAGTC	3 cut(s)	197, 298, 299
ScrFI	CCNGG	2 cut(s)	212, 255
SetI	ASST	5 cut(s)	25, 142, 158, 225, 234
SfaNI	GCATC	1 cut(s)	46
SmlI	CTYRAG	2 cut(s)	268, 287
SmoI	CTYRAG	2 cut(s)	268, 287
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	2 cut(s)	210, 253
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TscAI	CASTG	1 cut(s)	54
TspDTI	ATGAA	3 cut(s)	17, 151, 179
TspRI	CASTG	1 cut(s)	54
Vha464I	CTTAAG	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.